Wall clock time and date at job start Tue Mar 31 2020 03:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47035 * 150.00068 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 C 1.53001 * 109.47357 * 181.33347 * 14 12 11 16 16 N 1.46494 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.34782 * 119.99883 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99923 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99776 * 180.02562 * 17 16 15 20 20 H 1.08993 * 109.48335 * 54.99314 * 19 17 16 21 21 C 1.53098 * 109.47684 * 294.96710 * 19 17 16 22 22 C 1.53177 * 109.16298 * 182.41094 * 21 19 17 23 23 C 1.53180 * 109.03501 * 56.98626 * 22 21 19 24 24 C 1.53101 * 109.16201 * 303.01692 * 23 22 21 25 25 O 1.42898 * 109.42141 * 57.60558 * 24 23 22 26 26 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 27 27 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 29 29 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 30 30 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 31 31 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 32 32 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 33 33 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 34 34 H 1.09003 * 109.46648 * 299.99860 * 15 14 12 35 35 H 1.09000 * 109.47215 * 59.98952 * 15 14 12 36 36 H 0.97001 * 120.00138 * 359.97438 * 16 15 14 37 37 H 1.08988 * 109.52443 * 302.32137 * 21 19 17 38 38 H 1.09005 * 109.51990 * 62.51178 * 21 19 17 39 39 H 1.08992 * 109.54524 * 176.85423 * 22 21 19 40 40 H 1.09004 * 109.54080 * 297.11965 * 22 21 19 41 41 H 1.08994 * 109.52433 * 62.92133 * 23 22 21 42 42 H 1.09003 * 109.51946 * 183.05493 * 23 22 21 43 43 H 1.08995 * 109.47741 * 177.59472 * 24 23 22 44 44 H 1.09003 * 109.48034 * 297.63062 * 24 23 22 45 45 H 1.09002 * 110.36696 * 85.26297 * 26 9 7 46 46 H 1.08995 * 110.36608 * 323.05133 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 6 2.3499 -6.6563 -0.7156 16 7 2.5305 -8.0395 -0.2681 17 6 3.6207 -8.7342 -0.6493 18 8 4.4519 -8.2144 -1.3633 19 6 3.8061 -10.1573 -0.1895 20 1 2.9297 -10.7448 -0.4628 21 6 3.9845 -10.1833 1.3309 22 6 4.2324 -11.6255 1.7835 23 6 5.4557 -12.1775 1.0452 24 6 5.2206 -12.0745 -0.4642 25 8 4.9657 -10.7125 -0.8135 26 6 1.9335 -3.7312 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5607 -2.0564 -0.8839 29 1 -0.5599 -2.0893 0.9002 30 1 -1.2974 -4.2573 -0.6785 31 1 -0.6320 -4.4259 0.9776 32 1 1.0793 -6.1306 0.9428 33 1 0.2074 -6.7095 -0.4969 34 1 2.3127 -6.6282 -1.8046 35 1 3.1846 -6.0493 -0.3649 36 1 1.8654 -8.4553 0.3027 37 1 4.8365 -9.5629 1.6083 38 1 3.0830 -9.8011 1.8100 39 1 4.4157 -11.6442 2.8577 40 1 3.3598 -12.2359 1.5505 41 1 6.3375 -11.5974 1.3168 42 1 5.6071 -13.2213 1.3207 43 1 6.1053 -12.4264 -0.9947 44 1 4.3627 -12.6873 -0.7411 45 1 2.1668 -4.0420 1.0178 46 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691880052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:20 Heat of formation + Delta-G solvation = -99.694165 kcal Electronic energy + Delta-G solvation = -23923.635117 eV Core-core repulsion = 20426.107225 eV Total energy + Delta-G solvation = -3497.527892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30620 -39.70075 -39.19364 -36.47859 -34.89616 -34.50160 -32.97637 -31.98321 -30.64554 -28.30851 -26.96310 -25.99460 -24.84843 -23.59593 -21.97232 -21.75512 -21.22964 -20.78206 -18.87028 -18.48445 -17.67697 -17.00216 -16.72830 -16.58182 -16.40940 -15.97448 -15.63711 -15.47693 -15.32158 -15.00945 -14.59551 -14.08548 -13.89018 -13.71065 -13.63178 -13.59374 -13.31461 -13.06952 -12.81986 -12.66244 -12.50816 -12.24027 -12.17027 -12.01612 -11.93995 -11.79114 -11.55383 -11.40154 -11.35886 -11.31353 -10.73886 -10.71419 -10.47050 -10.12087 -8.89025 -7.86269 -5.21155 1.43423 1.45741 1.53654 1.54404 1.84047 2.48560 3.05017 3.31560 3.58956 3.67739 3.77817 3.80221 3.91008 3.99517 4.03179 4.06238 4.16282 4.20554 4.35167 4.38006 4.49615 4.62274 4.65588 4.71011 4.76947 4.80850 4.86336 4.91299 5.00548 5.03475 5.10189 5.13813 5.17432 5.18261 5.27060 5.37353 5.41422 5.44010 5.53511 5.71221 5.79528 6.12836 6.20490 6.56713 7.10461 7.22820 7.78382 8.43033 9.24300 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002448 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.750199 B =11433.918628 C =11809.445103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.632 5.632 10 C 0.179 3.821 11 C -0.121 4.121 12 C -0.086 4.086 13 H 0.071 0.929 14 C -0.097 4.097 15 C 0.123 3.877 16 N -0.707 5.707 17 C 0.509 3.491 18 O -0.580 6.580 19 C 0.078 3.922 20 H 0.115 0.885 21 C -0.144 4.144 22 C -0.118 4.118 23 C -0.159 4.159 24 C 0.052 3.948 25 O -0.395 6.395 26 C 0.133 3.867 27 H 0.247 0.753 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.420 0.580 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.025 0.975 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -29.749 4.254 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.106 4.106 13 H 0.089 0.911 14 C -0.135 4.135 15 C -0.001 4.001 16 N -0.361 5.361 17 C 0.296 3.704 18 O -0.459 6.459 19 C 0.017 3.983 20 H 0.132 0.868 21 C -0.182 4.182 22 C -0.155 4.155 23 C -0.196 4.196 24 C -0.024 4.024 25 O -0.315 6.315 26 C 0.008 3.992 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.023 0.977 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.258 0.742 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.096 -29.060 3.633 29.449 hybrid contribution 0.207 1.386 0.173 1.412 sum 3.302 -27.675 3.806 28.130 Atomic orbital electron populations 1.70191 1.06218 1.25238 1.58396 1.25662 0.96698 1.01024 1.02736 0.85079 0.77637 0.79129 0.77514 1.21283 1.21750 1.19520 1.19457 0.90884 0.84079 1.42896 0.90474 1.44910 1.02749 1.01216 1.86983 1.20999 0.83456 0.92688 0.97399 1.22753 0.97307 0.94345 1.01489 1.22161 0.94903 0.93884 0.99672 0.91099 1.21583 0.96302 0.93745 1.01854 1.21298 0.98401 0.81251 0.99171 1.45740 1.23672 1.13978 1.52703 1.20908 0.81176 0.88661 0.79689 1.90721 1.44539 1.71834 1.38768 1.22005 0.91183 0.90706 0.94368 0.86795 1.22178 1.03973 0.99615 0.92430 1.21616 0.98714 0.94105 1.01064 1.22231 0.98952 1.03100 0.95351 1.22895 1.02387 0.81215 0.95890 1.88032 1.45535 1.28701 1.69194 1.21829 0.95370 0.84841 0.97188 0.94394 0.97521 0.97713 0.89862 0.90302 0.89750 0.88118 0.92505 0.93378 0.74221 0.92675 0.87755 0.89875 0.89434 0.92490 0.88482 0.88177 0.91042 0.95711 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.93 10.33 21.65 0.22 -58.70 16 2 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 3 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.24 -14.35 10.28 84.03 0.86 -13.48 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -33.79 3.40 -691.30 -2.35 -36.15 16 10 C 0.18 9.01 5.38 86.68 0.47 9.47 16 11 C -0.12 -4.13 6.42 31.78 0.20 -3.92 16 12 C -0.09 -2.72 3.07 -9.40 -0.03 -2.74 16 13 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 14 C -0.10 -2.00 4.85 30.59 0.15 -1.85 16 15 C 0.12 2.93 5.52 86.38 0.48 3.41 16 16 N -0.71 -13.12 5.52 -463.06 -2.56 -15.68 16 17 C 0.51 12.65 7.18 87.66 0.63 13.28 16 18 O -0.58 -21.51 16.51 15.94 0.26 -21.25 16 19 C 0.08 1.33 3.06 29.88 0.09 1.43 16 20 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 21 C -0.14 -1.74 5.37 30.69 0.16 -1.58 16 22 C -0.12 -0.92 6.03 30.71 0.19 -0.73 16 23 C -0.16 -1.55 6.14 30.69 0.19 -1.36 16 24 C 0.05 0.67 6.84 72.02 0.49 1.17 16 25 O -0.40 -8.95 9.94 -130.00 -1.29 -10.24 16 26 C 0.13 5.50 5.89 86.86 0.51 6.01 16 27 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.01 0.37 7.39 -2.38 -0.02 0.35 16 29 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 32 H 0.08 1.57 8.10 -2.38 -0.02 1.55 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.41 7.45 -2.39 -0.02 1.40 16 36 H 0.42 4.14 8.32 -92.71 -0.77 3.37 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.74 7.99 -2.38 -0.02 0.72 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.03 1.00 8.00 -2.39 -0.02 0.98 16 46 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 Total: -1.00 -82.11 362.81 1.35 -80.77 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.17 Total: 6.29 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.86 Total: 5.51 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.68 Total: -110.52 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.03 Total: -31.49 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -82.11 1.35 -80.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691880052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.929 kcal (2) G-P(sol) polarization free energy of solvation -82.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds