Wall clock time and date at job start Tue Mar 31 2020 03:12:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.47056 * 125.40646 * 2 1
4 4 C 1.54107 * 103.85959 * 180.02562 * 3 2 1
5 5 H 1.09005 * 110.54960 * 118.73671 * 4 3 2
6 6 C 1.50696 * 110.54713 * 241.40688 * 4 3 2
7 7 O 1.21279 * 120.00492 * 100.00121 * 6 4 3
8 8 N 1.34779 * 119.99917 * 279.99592 * 6 4 3
9 9 C 1.47426 * 125.64491 * 4.96283 * 8 6 4
10 10 C 1.54908 * 104.83098 * 204.16856 * 9 8 6
11 11 C 1.55157 * 101.58506 * 322.99402 * 10 9 8
12 12 C 1.47017 * 125.64949 * 185.01354 * 8 6 4
13 13 H 1.08999 * 109.88749 * 59.48153 * 12 8 6
14 14 C 1.53002 * 109.88533 * 298.31188 * 12 8 6
15 15 N 1.46499 * 109.47495 * 176.86322 * 14 12 8
16 16 C 1.36937 * 119.99838 * 184.97721 * 15 14 12
17 17 H 1.07995 * 119.99965 * 354.86406 * 16 15 14
18 18 C 1.38815 * 119.99621 * 174.86469 * 16 15 14
19 19 N 1.31619 * 119.99695 * 184.78127 * 18 16 15
20 20 Si 1.86791 * 120.00042 * 4.78359 * 18 16 15
21 21 H 1.48503 * 109.47152 * 94.66291 * 20 18 16
22 22 H 1.48504 * 109.47192 * 214.66053 * 20 18 16
23 23 H 1.48496 * 109.47590 * 334.66290 * 20 18 16
24 24 N 1.47054 * 103.86442 * 359.97438 * 4 3 2
25 25 C 1.33947 * 125.40977 * 180.02562 * 2 1 3
26 26 O 1.21583 * 123.04586 * 359.97438 * 25 2 1
27 27 H 1.09001 * 109.47024 * 90.00087 * 1 2 3
28 28 H 1.09000 * 109.47013 * 209.99933 * 1 2 3
29 29 H 1.08994 * 109.47418 * 330.00239 * 1 2 3
30 30 H 1.08994 * 110.55081 * 61.40915 * 3 2 1
31 31 H 1.09002 * 110.54704 * 298.59228 * 3 2 1
32 32 H 1.09008 * 110.36550 * 85.33830 * 9 8 6
33 33 H 1.08997 * 110.46313 * 323.05836 * 9 8 6
34 34 H 1.09004 * 111.00799 * 204.91930 * 10 9 8
35 35 H 1.08997 * 111.00514 * 81.06566 * 10 9 8
36 36 H 1.09003 * 110.72073 * 277.13547 * 11 10 9
37 37 H 1.09000 * 110.87782 * 153.93562 * 11 10 9
38 38 H 1.09004 * 109.47294 * 296.87168 * 14 12 8
39 39 H 1.09000 * 109.46662 * 56.86255 * 14 12 8
40 40 H 0.96995 * 119.99708 * 4.97192 * 15 14 12
41 41 H 0.96998 * 119.99950 * 180.02562 * 19 18 16
42 42 H 0.96998 * 125.41106 * 179.97438 * 24 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.3170 1.1986 0.0000
4 6 3.7504 0.6326 -0.0007
5 1 4.2862 0.9488 -0.8958
6 6 4.4908 1.0662 1.2382
7 8 4.6030 0.3047 2.1754
8 7 5.0285 2.3003 1.3046
9 6 4.8805 3.3578 0.2881
10 6 6.1127 4.2751 0.4880
11 6 6.2682 4.2561 2.0316
12 6 5.8604 2.8145 2.4023
13 1 6.7501 2.1950 2.5148
14 6 5.0581 2.8196 3.7051
15 7 5.9172 3.2623 4.8061
16 6 5.4443 3.2496 6.0911
17 1 4.4134 2.9928 6.2846
18 6 6.2903 3.5667 7.1451
19 7 5.8631 3.4636 8.3857
20 14 8.0347 4.1400 6.8025
21 1 8.0728 5.6244 6.7810
22 1 8.9392 3.6370 7.8675
23 1 8.4792 3.6144 5.4867
24 7 3.5538 -0.8247 -0.0003
25 6 2.2411 -1.0917 -0.0005
26 8 1.7946 -2.2226 -0.0005
27 1 -0.3633 0.0000 -1.0277
28 1 -0.3633 -0.8900 0.5138
29 1 -0.3634 0.8899 0.5138
30 1 2.1406 1.7934 0.8961
31 1 2.1405 1.7934 -0.8962
32 1 3.9600 3.9176 0.4543
33 1 4.8864 2.9273 -0.7132
34 1 5.9112 5.2841 0.1280
35 1 6.9940 3.8571 0.0014
36 1 5.5967 4.9783 2.4958
37 1 7.3010 4.4510 2.3204
38 1 4.2120 3.4999 3.6081
39 1 4.6933 1.8133 3.9109
40 1 6.8209 3.5643 4.6247
41 1 6.4541 3.6856 9.1222
42 1 4.2621 -1.4874 -0.0010
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699757235.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:12:37
Heat of formation + Delta-G solvation = -14.861762 kcal
Electronic energy + Delta-G solvation = -24689.344882 eV
Core-core repulsion = 21091.955255 eV
Total energy + Delta-G solvation = -3597.389626 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.59367 -39.93377 -37.65747 -36.33546 -34.74955 -34.29839 -32.06144 -31.51662
-29.80870 -28.97624 -27.40723 -25.45342 -24.40423 -22.75809 -22.00261 -20.97772
-20.67447 -19.34248 -18.02805 -17.81923 -17.35418 -16.74188 -16.31492 -15.78571
-15.12541 -14.74337 -14.49570 -14.33794 -14.14839 -14.03265 -13.73732 -13.54912
-13.34146 -13.13545 -12.82910 -12.69309 -12.61559 -12.41783 -12.28421 -11.78345
-11.42244 -11.24483 -10.95605 -10.76085 -10.58530 -10.44242 -10.26240 -10.06593
-9.61842 -9.41192 -8.87673 -8.83587 -8.68253 -7.21633 -5.75418 -3.11079
2.20040 2.45990 2.63275 3.05061 3.35680 3.37006 3.44700 3.60249
3.95044 4.08863 4.35065 4.43517 4.59077 4.64585 4.69314 4.81691
4.94513 5.09111 5.15150 5.18277 5.27766 5.33679 5.45434 5.50884
5.55331 5.62869 5.69504 5.71647 5.83981 5.89932 6.16835 6.27658
6.38627 6.65585 6.85858 6.86389 7.20589 7.39779 7.99111 8.05690
8.38793 8.43125 9.22333 9.93974 10.14050 11.43026
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.019274 B = 0.003936 C = 0.003548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1452.397727 B = 7112.340610 C = 7889.544808
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.122 3.878
2 N -0.637 5.637
3 C 0.106 3.894
4 C 0.109 3.891
5 H 0.115 0.885
6 C 0.512 3.488
7 O -0.505 6.505
8 N -0.609 5.609
9 C 0.095 3.905
10 C -0.133 4.133
11 C -0.127 4.127
12 C 0.127 3.873
13 H 0.077 0.923
14 C 0.149 3.851
15 N -0.752 5.752
16 C -0.242 4.242
17 H 0.089 0.911
18 C 0.004 3.996
19 N -0.933 5.933
20 Si 0.887 3.113
21 H -0.285 1.285
22 H -0.290 1.290
23 H -0.278 1.278
24 N -0.715 5.715
25 C 0.705 3.295
26 O -0.582 6.582
27 H 0.056 0.944
28 H 0.078 0.922
29 H 0.074 0.926
30 H 0.088 0.912
31 H 0.094 0.906
32 H 0.074 0.926
33 H 0.076 0.924
34 H 0.084 0.916
35 H 0.075 0.925
36 H 0.086 0.914
37 H 0.081 0.919
38 H 0.022 0.978
39 H 0.047 0.953
40 H 0.361 0.639
41 H 0.259 0.741
42 H 0.434 0.566
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.536 2.107 -25.702 26.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.020 4.020
2 N -0.377 5.377
3 C -0.018 4.018
4 C -0.001 4.001
5 H 0.132 0.868
6 C 0.297 3.703
7 O -0.378 6.378
8 N -0.345 5.345
9 C -0.028 4.028
10 C -0.171 4.171
11 C -0.165 4.165
12 C 0.024 3.976
13 H 0.095 0.905
14 C 0.021 3.979
15 N -0.399 5.399
16 C -0.372 4.372
17 H 0.107 0.893
18 C -0.191 4.191
19 N -0.581 5.581
20 Si 0.717 3.283
21 H -0.211 1.211
22 H -0.217 1.217
23 H -0.204 1.204
24 N -0.377 5.377
25 C 0.406 3.594
26 O -0.459 6.459
27 H 0.074 0.926
28 H 0.097 0.903
29 H 0.093 0.907
30 H 0.106 0.894
31 H 0.112 0.888
32 H 0.092 0.908
33 H 0.094 0.906
34 H 0.103 0.897
35 H 0.093 0.907
36 H 0.104 0.896
37 H 0.100 0.900
38 H 0.040 0.960
39 H 0.065 0.935
40 H 0.194 0.806
41 H 0.069 0.931
42 H 0.277 0.723
Dipole moment (debyes) X Y Z Total
from point charges -5.102 0.960 -24.988 25.521
hybrid contribution 1.720 0.410 -0.005 1.769
sum -3.381 1.370 -24.993 25.257
Atomic orbital electron populations
1.21408 0.75232 1.03567 1.01790 1.47000 1.06496 1.05505 1.78676
1.22282 0.86243 0.89182 1.04078 1.21800 0.97145 0.83389 0.97812
0.86785 1.20342 0.79957 0.81018 0.89014 1.90832 1.57448 1.52110
1.37382 1.48516 1.51717 1.12054 1.22171 1.22428 0.99440 0.89240
0.91660 1.22781 0.97513 0.99864 0.96941 1.22733 1.03113 0.95900
0.94736 1.21902 0.93766 0.94493 0.87417 0.90512 1.20945 0.92727
0.98859 0.85345 1.42607 1.13751 1.79849 1.03695 1.19029 0.97137
1.39704 0.81304 0.89344 1.24675 0.97538 1.01965 0.94961 1.69720
1.36171 1.54638 0.97551 0.86507 0.86125 0.78596 0.77070 1.21134
1.21679 1.20394 1.44839 1.07029 1.06113 1.79670 1.15788 0.81633
0.84647 0.77348 1.90963 1.75804 1.20891 1.58278 0.92560 0.90284
0.90718 0.89352 0.88811 0.90788 0.90612 0.89702 0.90667 0.89556
0.90036 0.95992 0.93482 0.80624 0.93072 0.72334
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 0.98 11.03 59.85 0.66 1.64 16
2 N -0.64 -6.83 3.36 -186.73 -0.63 -7.45 16
3 C 0.11 0.83 7.24 -3.16 -0.02 0.81 16
4 C 0.11 0.99 3.46 -68.20 -0.24 0.75 16
5 H 0.11 0.61 7.18 -51.93 -0.37 0.24 16
6 C 0.51 6.75 6.79 -10.99 -0.07 6.67 16
7 O -0.50 -9.47 15.37 5.56 0.09 -9.38 16
8 N -0.61 -7.11 3.06 -163.02 -0.50 -7.61 16
9 C 0.10 0.66 6.66 -2.53 -0.02 0.64 16
10 C -0.13 -0.97 7.08 -24.58 -0.17 -1.14 16
11 C -0.13 -1.47 6.00 -24.89 -0.15 -1.62 16
12 C 0.13 1.90 3.00 -66.95 -0.20 1.70 16
13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
14 C 0.15 3.01 5.63 -4.04 -0.02 2.99 16
15 N -0.75 -18.16 5.24 -59.91 -0.31 -18.47 16
16 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16
17 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16
18 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16
19 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16
20 Si 0.89 22.12 27.93 -169.99 -4.75 17.37 16
21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
23 H -0.28 -6.42 6.25 56.52 0.35 -6.07 16
24 N -0.72 -8.37 5.60 -59.33 -0.33 -8.70 16
25 C 0.71 9.91 8.60 -88.39 -0.76 9.15 16
26 O -0.58 -10.45 17.53 5.29 0.09 -10.36 16
27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
28 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16
29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.09 0.74 7.72 -51.93 -0.40 0.34 16
31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16
33 H 0.08 0.30 7.00 -51.93 -0.36 -0.07 16
34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
36 H 0.09 1.08 7.80 -51.93 -0.40 0.68 16
37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
38 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16
39 H 0.05 1.11 6.60 -51.93 -0.34 0.76 16
40 H 0.36 8.28 5.13 -40.82 -0.21 8.07 16
41 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16
42 H 0.43 4.75 8.96 -40.82 -0.37 4.39 16
LS Contribution 341.89 15.07 5.15 5.15
Total: -1.00 -39.62 341.89 -7.95 -47.57
By element:
Atomic # 1 Polarization: 12.78 SS G_CDS: -6.28 Total: 6.50 kcal
Atomic # 6 Polarization: 15.68 SS G_CDS: -1.25 Total: 14.43 kcal
Atomic # 7 Polarization: -70.28 SS G_CDS: -1.00 Total: -71.28 kcal
Atomic # 8 Polarization: -19.91 SS G_CDS: 0.18 Total: -19.74 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -4.75 Total: 17.37 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -39.62 -7.95 -47.57 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699757235.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.704 kcal
(2) G-P(sol) polarization free energy of solvation -39.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.917 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.566 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.862 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds