Wall clock time and date at job start Tue Mar 31 2020 03:12:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.47056 * 125.40646 * 2 1
4 4 C 1.54107 * 103.85959 * 180.02562 * 3 2 1
5 5 H 1.09005 * 110.54960 * 118.73671 * 4 3 2
6 6 C 1.50696 * 110.54713 * 241.40688 * 4 3 2
7 7 O 1.21279 * 120.00492 * 100.00121 * 6 4 3
8 8 N 1.34779 * 119.99917 * 279.99592 * 6 4 3
9 9 C 1.47426 * 125.64491 * 4.96283 * 8 6 4
10 10 C 1.54908 * 104.83098 * 204.16856 * 9 8 6
11 11 C 1.55157 * 101.58506 * 322.99402 * 10 9 8
12 12 C 1.47017 * 125.64949 * 185.01354 * 8 6 4
13 13 H 1.08999 * 109.88749 * 59.48153 * 12 8 6
14 14 C 1.53002 * 109.88533 * 298.31188 * 12 8 6
15 15 N 1.46499 * 109.47495 * 176.86322 * 14 12 8
16 16 C 1.36937 * 119.99838 * 184.97721 * 15 14 12
17 17 H 1.07995 * 119.99965 * 354.86406 * 16 15 14
18 18 C 1.38815 * 119.99621 * 174.86469 * 16 15 14
19 19 N 1.31619 * 119.99695 * 184.78127 * 18 16 15
20 20 Si 1.86791 * 120.00042 * 4.78359 * 18 16 15
21 21 H 1.48503 * 109.47152 * 94.66291 * 20 18 16
22 22 H 1.48504 * 109.47192 * 214.66053 * 20 18 16
23 23 H 1.48496 * 109.47590 * 334.66290 * 20 18 16
24 24 N 1.47054 * 103.86442 * 359.97438 * 4 3 2
25 25 C 1.33947 * 125.40977 * 180.02562 * 2 1 3
26 26 O 1.21583 * 123.04586 * 359.97438 * 25 2 1
27 27 H 1.09001 * 109.47024 * 90.00087 * 1 2 3
28 28 H 1.09000 * 109.47013 * 209.99933 * 1 2 3
29 29 H 1.08994 * 109.47418 * 330.00239 * 1 2 3
30 30 H 1.08994 * 110.55081 * 61.40915 * 3 2 1
31 31 H 1.09002 * 110.54704 * 298.59228 * 3 2 1
32 32 H 1.09008 * 110.36550 * 85.33830 * 9 8 6
33 33 H 1.08997 * 110.46313 * 323.05836 * 9 8 6
34 34 H 1.09004 * 111.00799 * 204.91930 * 10 9 8
35 35 H 1.08997 * 111.00514 * 81.06566 * 10 9 8
36 36 H 1.09003 * 110.72073 * 277.13547 * 11 10 9
37 37 H 1.09000 * 110.87782 * 153.93562 * 11 10 9
38 38 H 1.09004 * 109.47294 * 296.87168 * 14 12 8
39 39 H 1.09000 * 109.46662 * 56.86255 * 14 12 8
40 40 H 0.96995 * 119.99708 * 4.97192 * 15 14 12
41 41 H 0.96998 * 119.99950 * 180.02562 * 19 18 16
42 42 H 0.96998 * 125.41106 * 179.97438 * 24 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.3170 1.1986 0.0000
4 6 3.7504 0.6326 -0.0007
5 1 4.2862 0.9488 -0.8958
6 6 4.4908 1.0662 1.2382
7 8 4.6030 0.3047 2.1754
8 7 5.0285 2.3003 1.3046
9 6 4.8805 3.3578 0.2881
10 6 6.1127 4.2751 0.4880
11 6 6.2682 4.2561 2.0316
12 6 5.8604 2.8145 2.4023
13 1 6.7501 2.1950 2.5148
14 6 5.0581 2.8196 3.7051
15 7 5.9172 3.2623 4.8061
16 6 5.4443 3.2496 6.0911
17 1 4.4134 2.9928 6.2846
18 6 6.2903 3.5667 7.1451
19 7 5.8631 3.4636 8.3857
20 14 8.0347 4.1400 6.8025
21 1 8.0728 5.6244 6.7810
22 1 8.9392 3.6370 7.8675
23 1 8.4792 3.6144 5.4867
24 7 3.5538 -0.8247 -0.0003
25 6 2.2411 -1.0917 -0.0005
26 8 1.7946 -2.2226 -0.0005
27 1 -0.3633 0.0000 -1.0277
28 1 -0.3633 -0.8900 0.5138
29 1 -0.3634 0.8899 0.5138
30 1 2.1406 1.7934 0.8961
31 1 2.1405 1.7934 -0.8962
32 1 3.9600 3.9176 0.4543
33 1 4.8864 2.9273 -0.7132
34 1 5.9112 5.2841 0.1280
35 1 6.9940 3.8571 0.0014
36 1 5.5967 4.9783 2.4958
37 1 7.3010 4.4510 2.3204
38 1 4.2120 3.4999 3.6081
39 1 4.6933 1.8133 3.9109
40 1 6.8209 3.5643 4.6247
41 1 6.4541 3.6856 9.1222
42 1 4.2621 -1.4874 -0.0010
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699757235.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:12:37
Heat of formation + Delta-G solvation = -48.266218 kcal
Electronic energy + Delta-G solvation = -24690.793408 eV
Core-core repulsion = 21091.955255 eV
Total energy + Delta-G solvation = -3598.838152 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 296.164 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.48967 -40.93523 -38.74767 -37.39760 -36.58035 -35.12766 -33.77645 -32.77816
-30.97922 -30.02869 -28.16135 -26.82930 -25.44473 -24.09322 -23.30285 -21.95350
-21.57986 -20.58271 -19.58559 -18.83476 -18.49288 -17.69406 -17.25823 -16.82858
-16.47013 -16.13559 -15.73233 -15.43301 -15.27653 -15.12447 -14.99730 -14.76471
-14.49940 -14.15274 -14.04080 -13.74629 -13.55323 -13.30231 -13.19237 -12.97686
-12.94290 -12.79559 -12.21061 -12.03689 -11.89258 -11.73367 -11.59421 -11.51226
-11.32398 -10.99859 -10.42977 -9.71494 -9.60929 -9.36463 -8.07817 -5.43407
1.31581 1.33401 1.40256 1.47200 1.52621 1.74555 2.06703 2.45057
2.85412 3.21206 3.23501 3.28537 3.62523 3.74762 3.78461 3.90410
3.98557 4.05326 4.32107 4.34726 4.44759 4.51218 4.58038 4.70367
4.77556 4.83633 4.87426 4.93759 4.97011 5.06101 5.13861 5.22844
5.37085 5.45527 5.59086 5.68617 5.97574 6.14963 6.31268 6.49948
7.00732 7.06325 7.40054 7.74598 7.98662 9.14007
Molecular weight = 296.16amu
Principal moments of inertia in cm(-1)
A = 0.019274 B = 0.003936 C = 0.003548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1452.397727 B = 7112.340610 C = 7889.544808
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.115 3.885
2 N -0.638 5.638
3 C 0.105 3.895
4 C 0.118 3.882
5 H 0.170 0.830
6 C 0.505 3.495
7 O -0.577 6.577
8 N -0.602 5.602
9 C 0.086 3.914
10 C -0.119 4.119
11 C -0.127 4.127
12 C 0.133 3.867
13 H 0.057 0.943
14 C 0.153 3.847
15 N -0.750 5.750
16 C -0.244 4.244
17 H 0.043 0.957
18 C -0.064 4.064
19 N -0.984 5.984
20 Si 0.965 3.035
21 H -0.268 1.268
22 H -0.295 1.295
23 H -0.249 1.249
24 N -0.717 5.717
25 C 0.691 3.309
26 O -0.636 6.636
27 H 0.079 0.921
28 H 0.054 0.946
29 H 0.099 0.901
30 H 0.081 0.919
31 H 0.151 0.849
32 H 0.092 0.908
33 H 0.123 0.877
34 H 0.114 0.886
35 H 0.087 0.913
36 H 0.076 0.924
37 H 0.082 0.918
38 H 0.023 0.977
39 H 0.004 0.996
40 H 0.370 0.630
41 H 0.260 0.740
42 H 0.433 0.567
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.200 5.015 -30.009 30.593
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.025 4.025
2 N -0.377 5.377
3 C -0.017 4.017
4 C 0.009 3.991
5 H 0.187 0.813
6 C 0.292 3.708
7 O -0.455 6.455
8 N -0.336 5.336
9 C -0.035 4.035
10 C -0.156 4.156
11 C -0.165 4.165
12 C 0.028 3.972
13 H 0.075 0.925
14 C 0.025 3.975
15 N -0.397 5.397
16 C -0.375 4.375
17 H 0.061 0.939
18 C -0.255 4.255
19 N -0.634 5.634
20 Si 0.791 3.209
21 H -0.193 1.193
22 H -0.222 1.222
23 H -0.173 1.173
24 N -0.377 5.377
25 C 0.391 3.609
26 O -0.517 6.517
27 H 0.097 0.903
28 H 0.073 0.927
29 H 0.118 0.882
30 H 0.099 0.901
31 H 0.169 0.831
32 H 0.110 0.890
33 H 0.141 0.859
34 H 0.132 0.868
35 H 0.105 0.895
36 H 0.094 0.906
37 H 0.100 0.900
38 H 0.041 0.959
39 H 0.022 0.978
40 H 0.204 0.796
41 H 0.069 0.931
42 H 0.275 0.725
Dipole moment (debyes) X Y Z Total
from point charges -3.775 3.957 -29.387 29.891
hybrid contribution 1.188 -0.496 1.413 1.911
sum -2.587 3.461 -27.974 28.306
Atomic orbital electron populations
1.21610 0.74041 1.03593 1.03299 1.47223 1.07414 1.05572 1.77442
1.22645 0.84441 0.88185 1.06470 1.22133 0.98155 0.81631 0.97176
0.81289 1.21246 0.79317 0.80699 0.89530 1.90813 1.60230 1.54277
1.40202 1.48609 1.50316 1.12619 1.22079 1.22915 1.00181 0.88090
0.92274 1.22812 0.98169 1.01754 0.92881 1.22711 1.02684 0.92530
0.98607 1.21646 0.92500 0.97003 0.86055 0.92505 1.20964 0.93238
0.96012 0.87237 1.42495 1.14535 1.79850 1.02830 1.18948 0.95517
1.39191 0.83879 0.93864 1.25646 1.03179 1.02310 0.94379 1.69926
1.38372 1.56163 0.98917 0.85261 0.78914 0.78740 0.77986 1.19308
1.22167 1.17298 1.44920 1.06327 1.07680 1.78774 1.16183 0.82558
0.84773 0.77429 1.90907 1.76874 1.23197 1.60765 0.90277 0.92745
0.88233 0.90083 0.83113 0.88964 0.85922 0.86797 0.89466 0.90550
0.89973 0.95876 0.97774 0.79561 0.93112 0.72469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 1.70 11.03 127.77 1.41 3.11 16
2 N -0.64 -12.56 3.36 -863.43 -2.90 -15.46 16
3 C 0.11 1.22 7.24 86.65 0.63 1.85 16
4 C 0.12 1.76 3.46 44.51 0.15 1.91 16
5 H 0.17 0.71 7.18 -2.38 -0.02 0.69 16
6 C 0.50 12.71 6.79 87.66 0.60 13.31 16
7 O -0.58 -22.68 15.37 -3.03 -0.05 -22.73 16
8 N -0.60 -12.55 3.06 -788.05 -2.41 -14.96 16
9 C 0.09 0.69 6.66 86.85 0.58 1.27 16
10 C -0.12 -1.06 7.08 31.99 0.23 -0.84 16
11 C -0.13 -2.57 6.00 31.78 0.19 -2.38 16
12 C 0.13 3.83 3.00 45.34 0.14 3.97 16
13 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
14 C 0.15 6.38 5.63 86.38 0.49 6.87 16
15 N -0.75 -36.89 5.24 -343.45 -1.80 -38.69 16
16 C -0.24 -14.85 10.47 84.03 0.88 -13.97 16
17 H 0.04 2.94 8.06 -2.91 -0.02 2.92 16
18 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16
19 N -0.98 -65.18 13.97 21.65 0.30 -64.88 16
20 Si 0.97 45.72 27.93 68.60 1.92 47.64 16
21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
22 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16
23 H -0.25 -10.44 6.25 99.48 0.62 -9.82 16
24 N -0.72 -16.23 5.60 -460.33 -2.58 -18.80 16
25 C 0.69 19.37 8.60 179.57 1.54 20.91 16
26 O -0.64 -23.84 17.53 -3.98 -0.07 -23.91 16
27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
28 H 0.05 1.07 7.92 -2.39 -0.02 1.05 16
29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16
30 H 0.08 1.11 7.72 -2.39 -0.02 1.09 16
31 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16
32 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16
33 H 0.12 -0.05 7.00 -2.39 -0.02 -0.07 16
34 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16
35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16
36 H 0.08 1.72 7.80 -2.39 -0.02 1.70 16
37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
38 H 0.02 0.96 8.07 -2.38 -0.02 0.94 16
39 H 0.00 0.21 6.60 -2.39 -0.02 0.19 16
40 H 0.37 16.67 5.13 -92.71 -0.48 16.20 16
41 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16
42 H 0.43 9.59 8.96 -92.71 -0.83 8.76 16
Total: -1.00 -97.25 341.89 -0.64 -97.89
By element:
Atomic # 1 Polarization: 21.65 SS G_CDS: -0.34 Total: 21.30 kcal
Atomic # 6 Polarization: 25.30 SS G_CDS: 7.30 Total: 32.60 kcal
Atomic # 7 Polarization: -143.40 SS G_CDS: -9.39 Total: -152.79 kcal
Atomic # 8 Polarization: -46.52 SS G_CDS: -0.12 Total: -46.63 kcal
Atomic # 14 Polarization: 45.72 SS G_CDS: 1.92 Total: 47.64 kcal
Total: -97.25 -0.64 -97.89 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699757235.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.623 kcal
(2) G-P(sol) polarization free energy of solvation -97.251 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.628 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.889 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.266 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds