Wall clock time and date at job start Tue Mar 31 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35766 * 116.99852 * 2 1 4 4 C 1.35593 * 126.07865 * 182.49683 * 3 2 1 5 5 C 1.41059 * 107.79597 * 179.90324 * 4 3 2 6 6 C 1.47723 * 125.98183 * 180.18036 * 5 4 3 7 7 O 1.21566 * 119.99934 * 0.23657 * 6 5 4 8 8 N 1.34773 * 120.00120 * 180.23967 * 6 5 4 9 9 C 1.46505 * 120.00207 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46969 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46745 * 179.97438 * 10 9 8 12 12 N 1.46502 * 109.47180 * 180.02562 * 11 10 9 13 13 C 1.46504 * 119.99854 * 89.99907 * 12 11 10 14 14 C 1.36933 * 120.00079 * 270.00427 * 12 11 10 15 15 H 1.08005 * 120.00346 * 22.70136 * 14 12 11 16 16 C 1.38815 * 120.00043 * 202.69845 * 14 12 11 17 17 N 1.31620 * 119.99737 * 16.15997 * 16 14 12 18 18 Si 1.86793 * 120.00124 * 196.16287 * 16 14 12 19 19 H 1.48504 * 109.47401 * 90.00154 * 18 16 14 20 20 H 1.48497 * 109.47491 * 209.99987 * 18 16 14 21 21 H 1.48502 * 109.47451 * 330.00425 * 18 16 14 22 22 N 1.31865 * 108.04021 * 0.36039 * 5 4 3 23 23 N 1.35839 * 126.09056 * 2.79991 * 3 2 1 24 24 C 1.46504 * 125.94497 * 359.97261 * 23 3 2 25 25 H 1.09000 * 109.47462 * 189.74548 * 1 2 3 26 26 H 1.08999 * 109.47051 * 309.74451 * 1 2 3 27 27 H 1.08999 * 109.46721 * 69.74609 * 1 2 3 28 28 H 1.08000 * 126.10234 * 0.03530 * 4 3 2 29 29 H 0.97003 * 119.99783 * 359.97438 * 8 6 5 30 30 H 1.09001 * 109.46974 * 299.99640 * 9 8 6 31 31 H 1.09002 * 109.47063 * 59.99972 * 9 8 6 32 32 H 1.08992 * 109.47395 * 300.00058 * 10 9 8 33 33 H 1.09002 * 109.46951 * 60.00270 * 10 9 8 34 34 H 1.09001 * 109.47373 * 300.00114 * 11 10 9 35 35 H 1.09002 * 109.46888 * 60.00583 * 11 10 9 36 36 H 1.09000 * 109.46352 * 93.26652 * 13 12 11 37 37 H 1.08993 * 109.47342 * 213.26555 * 13 12 11 38 38 H 1.08995 * 109.46875 * 333.27315 * 13 12 11 39 39 H 0.97004 * 119.99624 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.47371 * 82.76503 * 24 23 3 41 41 H 1.09000 * 109.47028 * 202.76421 * 24 23 3 42 42 H 1.09003 * 109.47049 * 322.76592 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3834 1.4242 -0.0477 5 6 3.5974 2.8183 -0.0307 6 6 4.9096 3.4955 -0.0729 7 8 5.9309 2.8388 -0.1320 8 7 4.9745 4.8414 -0.0456 9 6 6.2759 5.5130 -0.0868 10 6 6.0693 7.0285 -0.0448 11 6 7.4284 7.7298 -0.0872 12 7 7.2307 9.1808 -0.0462 13 6 7.1859 9.8780 1.2415 14 6 7.0875 9.8855 -1.2116 15 1 6.7562 9.3838 -2.1089 16 6 7.3683 11.2446 -1.2398 17 7 8.0628 11.7935 -0.2658 18 14 6.7604 12.2946 -2.6601 19 1 5.4142 12.8323 -2.3376 20 1 7.7028 13.4206 -2.8822 21 1 6.6808 11.4659 -3.8898 22 7 2.4214 3.4113 0.0333 23 7 1.4317 2.4204 0.0536 24 6 -0.0137 2.6497 0.1211 25 1 -0.3634 -1.0128 0.1739 26 1 -0.3633 0.6570 0.7902 27 1 -0.3633 0.3558 -0.9641 28 1 4.1486 0.6634 -0.0931 29 1 4.1596 5.3654 0.0012 30 1 6.8720 5.2033 0.7716 31 1 6.7952 5.2429 -1.0063 32 1 5.4734 7.3379 -0.9033 33 1 5.5498 7.2989 0.8746 34 1 8.0240 7.4203 0.7717 35 1 7.9482 7.4594 -1.0063 36 1 8.1825 10.2413 1.4927 37 1 6.4981 10.7208 1.1747 38 1 6.8442 9.1904 2.0151 39 1 8.2593 12.7432 -0.2857 40 1 -0.3486 2.5559 1.1542 41 1 -0.2402 3.6512 -0.2448 42 1 -0.5277 1.9126 -0.4958 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752014398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:24 Heat of formation + Delta-G solvation = 19.510775 kcal Electronic energy + Delta-G solvation = -23028.042626 eV Core-core repulsion = 19432.143505 eV Total energy + Delta-G solvation = -3595.899121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.73603 -40.63747 -39.20305 -37.93967 -36.22457 -34.55093 -33.76327 -31.92617 -30.96971 -29.04178 -27.95757 -27.56376 -26.69356 -24.51992 -23.15802 -22.50384 -22.12803 -20.93215 -19.24969 -18.69965 -17.73960 -17.48846 -17.29812 -16.74124 -16.68329 -16.30239 -16.18361 -15.78113 -15.43368 -15.28738 -14.84147 -14.67317 -14.61744 -14.48730 -13.99836 -13.91177 -13.37111 -13.03243 -12.80078 -12.64834 -12.48853 -12.41130 -12.31495 -12.26812 -12.07477 -11.83460 -11.82606 -11.46305 -11.38661 -10.60697 -10.35059 -10.07091 -9.55705 -8.76500 -7.81899 -5.29264 0.17316 1.02967 1.07105 1.47886 1.48856 1.57921 1.76962 2.24277 2.26450 2.53461 3.07993 3.31297 3.67024 3.80857 3.98562 4.13391 4.14910 4.25241 4.27444 4.30810 4.37433 4.49694 4.53140 4.65136 4.68950 4.72163 4.81388 4.88628 4.94830 4.98449 5.20443 5.24344 5.31422 5.36818 5.52913 5.65279 5.71157 6.08332 6.26295 6.35067 6.50095 7.03745 7.16924 7.89723 8.33634 9.22078 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.002405 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.250437 B =11639.913100 C =12214.662622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.299 6.299 3 C 0.281 3.719 4 C -0.263 4.263 5 C 0.042 3.958 6 C 0.597 3.403 7 O -0.561 6.561 8 N -0.702 5.702 9 C 0.130 3.870 10 C -0.128 4.128 11 C 0.150 3.850 12 N -0.620 5.620 13 C 0.174 3.826 14 C -0.260 4.260 15 H 0.071 0.929 16 C -0.057 4.057 17 N -0.939 5.939 18 Si 0.968 3.032 19 H -0.286 1.286 20 H -0.296 1.296 21 H -0.268 1.268 22 N -0.261 5.261 23 N -0.383 5.383 24 C 0.061 3.939 25 H 0.131 0.869 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.161 0.839 29 H 0.414 0.586 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.001 0.999 37 H 0.016 0.984 38 H 0.034 0.966 39 H 0.248 0.752 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.377 -23.572 2.066 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.205 6.205 3 C 0.113 3.887 4 C -0.293 4.293 5 C -0.124 4.124 6 C 0.381 3.619 7 O -0.438 6.438 8 N -0.353 5.353 9 C 0.006 3.994 10 C -0.169 4.169 11 C 0.024 3.976 12 N -0.344 5.344 13 C 0.029 3.971 14 C -0.391 4.391 15 H 0.089 0.911 16 C -0.252 4.252 17 N -0.586 5.586 18 Si 0.796 3.204 19 H -0.213 1.213 20 H -0.223 1.223 21 H -0.193 1.193 22 N -0.093 5.093 23 N -0.182 5.182 24 C -0.077 4.077 25 H 0.149 0.851 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.179 0.821 29 H 0.251 0.749 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.020 0.980 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.240 -23.062 2.103 31.423 hybrid contribution -0.184 0.526 -0.584 0.807 sum -21.423 -22.536 1.519 31.131 Atomic orbital electron populations 1.24124 0.75237 1.07512 1.03219 1.86336 1.24466 1.20220 1.89460 1.19460 0.90724 0.79899 0.98655 1.20433 0.93330 0.95304 1.20225 1.21645 0.92517 0.93536 1.04681 1.17096 0.86196 0.82229 0.76377 1.90781 1.35550 1.65932 1.51512 1.45894 1.11069 1.05505 1.72813 1.21340 0.83963 0.91696 1.02400 1.22171 1.00432 0.92023 1.02266 1.20779 0.94221 0.82677 0.99959 1.44170 1.84631 1.02816 1.02752 1.20537 0.97764 0.93646 0.85156 1.19518 1.37413 0.91811 0.90313 0.91083 1.25797 0.99390 0.99445 1.00594 1.70251 1.41516 1.11163 1.35682 0.85249 0.77289 0.78316 0.79506 1.21272 1.22306 1.19279 1.77647 0.95258 1.12080 1.24312 1.49416 1.08261 1.02188 1.58296 1.23055 0.71823 1.07143 1.05651 0.85083 0.89902 0.90244 0.82128 0.74911 0.90980 0.91506 0.92251 0.91670 0.92983 0.93585 0.98027 0.96544 0.94741 0.94309 0.88090 0.87670 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.42 113.37 1.07 1.04 16 2 O -0.30 -4.38 10.57 -90.93 -0.96 -5.34 16 3 C 0.28 5.50 7.78 83.46 0.65 6.14 16 4 C -0.26 -6.59 10.59 22.35 0.24 -6.35 16 5 C 0.04 1.15 7.09 42.34 0.30 1.45 16 6 C 0.60 18.27 7.83 86.75 0.68 18.95 16 7 O -0.56 -20.48 16.90 -3.92 -0.07 -20.55 16 8 N -0.70 -19.34 5.55 -466.08 -2.59 -21.93 16 9 C 0.13 3.76 5.67 86.38 0.49 4.25 16 10 C -0.13 -4.18 5.65 30.60 0.17 -4.00 16 11 C 0.15 5.99 5.65 86.38 0.49 6.48 16 12 N -0.62 -31.33 2.92 -726.93 -2.12 -33.45 16 13 C 0.17 8.68 8.99 127.77 1.15 9.83 16 14 C -0.26 -14.39 9.64 84.03 0.81 -13.58 16 15 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 16 C -0.06 -3.26 5.02 84.86 0.43 -2.83 16 17 N -0.94 -56.59 10.89 21.65 0.24 -56.36 16 18 Si 0.97 45.53 29.58 68.60 2.03 47.56 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 N -0.26 -6.23 12.26 -48.42 -0.59 -6.82 16 23 N -0.38 -6.66 4.03 -480.56 -1.94 -8.60 16 24 C 0.06 0.36 9.56 127.77 1.22 1.59 16 25 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.08 0.03 5.60 -2.39 -0.01 0.02 16 27 H 0.08 0.04 6.74 -2.39 -0.02 0.02 16 28 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 29 H 0.41 10.20 8.17 -92.71 -0.76 9.45 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 35 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 36 H 0.00 0.08 7.45 -2.39 -0.02 0.06 16 37 H 0.02 0.86 7.28 -2.39 -0.02 0.84 16 38 H 0.03 1.44 8.05 -2.39 -0.02 1.42 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.10 0.23 7.60 -2.39 -0.02 0.21 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.12 0.01 4.72 -2.39 -0.01 -0.01 16 Total: -1.00 -75.81 351.74 1.96 -73.85 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.28 Total: 8.68 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 7.69 Total: 22.96 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -7.01 Total: -127.16 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.03 Total: -25.89 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.81 1.96 -73.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752014398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.359 kcal (2) G-P(sol) polarization free energy of solvation -75.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds