Wall clock time and date at job start Tue Mar 31 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.36005 * 116.99661 * 179.97438 * 3 2 1 5 5 C 1.39687 * 125.66767 * 179.97438 * 4 3 2 6 6 C 1.37985 * 107.63610 * 179.97438 * 5 4 3 7 7 C 1.47176 * 126.43242 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99932 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99757 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99803 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46979 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46993 * 304.99829 * 11 10 9 13 13 C 1.53005 * 109.47397 * 64.99620 * 11 10 9 14 14 C 1.52991 * 109.47310 * 184.99755 * 11 10 9 15 15 N 1.46498 * 109.47463 * 174.99432 * 14 11 10 16 16 C 1.36937 * 120.00331 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99812 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00469 * 180.02562 * 16 15 14 19 19 N 1.31611 * 120.00312 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99500 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46899 * 89.99961 * 20 18 16 22 22 H 1.48504 * 109.46788 * 209.99891 * 20 18 16 23 23 H 1.48503 * 109.47172 * 329.99969 * 20 18 16 24 24 N 1.36666 * 107.12844 * 0.02562 * 6 5 4 25 25 H 0.96998 * 126.09700 * 179.97438 * 24 6 5 26 26 N 1.31220 * 125.67034 * 359.69525 * 4 3 2 27 27 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 28 28 H 1.09008 * 109.47419 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 30 30 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 31 31 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 32 32 H 1.08002 * 126.18108 * 359.94837 * 5 4 3 33 33 H 0.97008 * 119.99728 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47125 * 299.99398 * 10 9 7 35 35 H 1.08995 * 109.47556 * 60.00444 * 10 9 7 36 36 H 1.08996 * 109.46852 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.46659 * 300.00479 * 13 11 10 38 38 H 1.08998 * 109.46549 * 60.00170 * 13 11 10 39 39 H 1.09002 * 109.47404 * 294.99806 * 14 11 10 40 40 H 1.09002 * 109.47263 * 54.99948 * 14 11 10 41 41 H 0.97003 * 119.99832 * 0.02562 * 15 14 11 42 42 H 0.97006 * 120.00181 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.0135 2.7572 0.0001 6 6 5.3702 2.5056 0.0015 7 6 6.4455 3.5105 0.0011 8 8 6.1706 4.6953 -0.0010 9 7 7.7348 3.1178 0.0021 10 6 8.8051 4.1180 0.0011 11 6 10.1626 3.4123 0.0032 12 1 10.2126 2.7231 0.8463 13 6 10.3349 2.6338 -1.3027 14 6 11.2779 4.4522 0.1279 15 7 12.5692 3.7712 0.2501 16 6 13.7201 4.5028 0.3742 17 1 13.6758 5.5818 0.3824 18 6 14.9438 3.8575 0.4894 19 7 16.0498 4.5607 0.6092 20 14 15.0204 1.9911 0.4745 21 1 15.1809 1.5135 -0.9224 22 1 16.1761 1.5367 1.2889 23 1 13.7653 1.4395 1.0452 24 7 5.5278 1.1481 0.0022 25 1 6.3723 0.6708 0.0028 26 7 4.2528 0.5688 0.0067 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5455 3.7305 -0.0015 33 1 7.9539 2.1728 0.0035 34 1 8.7201 4.7403 -0.8898 35 1 8.7195 4.7427 0.8902 36 1 11.3021 2.1315 -1.3013 37 1 9.5403 1.8930 -1.3915 38 1 10.2849 3.3230 -2.1457 39 1 11.2840 5.0864 -0.7586 40 1 11.1056 5.0655 1.0123 41 1 12.6090 2.8020 0.2423 42 1 16.9049 4.1098 0.6901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753620766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:24 Heat of formation + Delta-G solvation = -19.178945 kcal Electronic energy + Delta-G solvation = -22801.778829 eV Core-core repulsion = 19204.201996 eV Total energy + Delta-G solvation = -3597.576834 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.57720 -40.70493 -39.29300 -38.34945 -36.16496 -34.32995 -33.09692 -32.49265 -31.53253 -31.17001 -27.94711 -27.42247 -25.20777 -24.21856 -23.30201 -22.30189 -21.74526 -21.28487 -20.21494 -19.37034 -18.11482 -17.46155 -17.39090 -16.90135 -16.71540 -16.46486 -15.97057 -15.71331 -15.31136 -15.16410 -14.96390 -14.75361 -14.68207 -14.22216 -13.86736 -13.64607 -13.54111 -13.42888 -13.20829 -12.87159 -12.66575 -12.27621 -12.13974 -12.02423 -11.97370 -11.84874 -11.76330 -11.69613 -11.36082 -10.97607 -10.46676 -10.17314 -9.81288 -9.29000 -8.02054 -5.36036 -0.13272 1.30944 1.34748 1.37159 1.42603 1.49847 1.64485 2.02032 2.29182 2.49172 3.29378 3.44853 3.52666 3.54085 3.93497 3.98665 4.05408 4.09906 4.11745 4.22852 4.38043 4.40205 4.51410 4.69113 4.76097 4.80243 4.92888 4.94481 5.00656 5.01329 5.09244 5.15085 5.23452 5.31870 5.45570 5.75756 5.77090 6.17922 6.21389 6.26974 6.40483 6.87984 7.08972 7.84104 8.04214 9.19505 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.036704 B = 0.002253 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.678095 B =12427.586396 C =13027.767658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.300 6.300 4 C 0.253 3.747 5 C -0.207 4.207 6 C 0.067 3.933 7 C 0.589 3.411 8 O -0.549 6.549 9 N -0.701 5.701 10 C 0.135 3.865 11 C -0.099 4.099 12 H 0.090 0.910 13 C -0.145 4.145 14 C 0.157 3.843 15 N -0.754 5.754 16 C -0.238 4.238 17 H 0.053 0.947 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.245 1.245 24 N -0.430 5.430 25 H 0.460 0.540 26 N -0.322 5.322 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.167 0.833 33 H 0.413 0.587 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.027 0.973 40 H 0.025 0.975 41 H 0.368 0.632 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.438 -13.610 -2.345 33.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.205 6.205 4 C 0.050 3.950 5 C -0.239 4.239 6 C -0.065 4.065 7 C 0.373 3.627 8 O -0.425 6.425 9 N -0.353 5.353 10 C 0.011 3.989 11 C -0.118 4.118 12 H 0.108 0.892 13 C -0.202 4.202 14 C 0.031 3.969 15 N -0.400 5.400 16 C -0.369 4.369 17 H 0.071 0.929 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.170 1.170 24 N -0.150 5.150 25 H 0.309 0.691 26 N -0.165 5.165 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.202 0.798 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -30.643 -13.566 -2.330 33.593 hybrid contribution 1.261 -0.568 0.081 1.385 sum -29.382 -14.134 -2.249 32.683 Atomic orbital electron populations 1.21828 0.90827 1.04375 1.03511 1.22979 0.96938 0.79877 1.02425 1.86328 1.13301 1.31549 1.89277 1.20342 0.84968 0.91918 0.97776 1.21239 0.90266 0.98657 1.13716 1.21008 0.94780 0.84741 1.05974 1.17041 0.81967 0.86760 0.76936 1.90880 1.83342 1.17671 1.50593 1.45708 1.04429 1.11464 1.73701 1.21302 0.84129 0.90413 1.03075 1.21415 0.92345 0.97728 1.00338 0.89167 1.21846 1.02070 1.00263 0.96066 1.20723 0.83676 0.94128 0.98410 1.42618 1.02576 1.04739 1.90074 1.19044 0.85482 0.91431 1.40911 0.92850 1.25575 0.94737 1.03031 1.02463 1.69899 0.98143 1.36546 1.58987 0.85372 0.77879 0.80339 0.77958 1.20253 1.22534 1.16971 1.46070 1.07252 1.02827 1.58889 0.69059 1.77314 0.88602 1.20263 1.30357 0.91497 0.88084 0.91518 0.91518 0.91559 0.81497 0.74957 0.90752 0.91028 0.93323 0.90115 0.92606 0.95512 0.95647 0.79783 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 71.98 0.74 -0.46 16 2 C 0.05 0.68 6.33 71.98 0.46 1.14 16 3 O -0.30 -5.70 10.22 -93.60 -0.96 -6.65 16 4 C 0.25 5.14 7.85 85.13 0.67 5.81 16 5 C -0.21 -4.26 10.63 22.56 0.24 -4.02 16 6 C 0.07 1.21 7.12 40.68 0.29 1.50 16 7 C 0.59 12.10 7.80 86.59 0.68 12.78 16 8 O -0.55 -15.75 16.90 -4.11 -0.07 -15.82 16 9 N -0.70 -10.98 5.28 -466.62 -2.46 -13.45 16 10 C 0.13 2.73 5.06 86.38 0.44 3.17 16 11 C -0.10 -2.26 2.46 -10.79 -0.03 -2.28 16 12 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 13 C -0.15 -2.99 8.94 71.98 0.64 -2.34 16 14 C 0.16 5.41 5.65 86.38 0.49 5.89 16 15 N -0.75 -33.11 5.13 -343.46 -1.76 -34.87 16 16 C -0.24 -13.34 10.47 84.03 0.88 -12.46 16 17 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 18 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 19 N -0.99 -62.79 13.97 21.65 0.30 -62.48 16 20 Si 0.96 43.77 27.74 68.60 1.90 45.67 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.25 -9.77 6.52 99.48 0.65 -9.12 16 24 N -0.43 -6.03 7.33 -48.20 -0.35 -6.38 16 25 H 0.46 3.05 8.23 -213.36 -1.76 1.30 16 26 N -0.32 -5.99 12.05 -170.76 -2.06 -8.05 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 33 H 0.41 3.74 6.83 -92.70 -0.63 3.11 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.19 7.18 -2.39 -0.02 1.17 16 37 H 0.08 1.06 7.18 -2.39 -0.02 1.04 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.37 15.00 4.71 -92.71 -0.44 14.57 16 42 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -75.56 355.57 -1.33 -76.89 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -1.83 Total: 19.83 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.96 Total: 5.31 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -6.34 Total: -125.23 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -1.03 Total: -22.47 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.90 Total: 45.67 kcal Total: -75.56 -1.33 -76.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.712 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds