Wall clock time and date at job start Tue Mar 31 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99760 * 2 1 4 4 H 1.48503 * 109.47245 * 240.00441 * 3 2 1 5 5 H 1.48496 * 109.46823 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46587 * 120.00622 * 3 2 1 7 7 C 1.38811 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00418 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49073 * 0.02562 * 9 7 2 11 11 C 1.53946 * 86.11679 * 155.35781 * 10 9 7 12 12 C 1.47577 * 134.49287 * 180.02562 * 9 7 2 13 13 H 1.08994 * 113.87045 * 90.32266 * 12 9 7 14 14 C 1.53006 * 113.77037 * 318.93930 * 12 9 7 15 15 N 1.46500 * 109.46998 * 78.50619 * 14 12 9 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 12 17 17 O 1.21282 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00461 * 180.02562 * 16 15 14 19 19 O 1.42895 * 109.47327 * 179.97438 * 18 16 15 20 20 C 1.42899 * 113.99780 * 179.97438 * 19 18 16 21 21 C 1.53008 * 109.47300 * 180.02562 * 20 19 18 22 22 C 1.54265 * 110.02953 * 292.17375 * 21 20 19 23 23 C 1.54892 * 104.19280 * 217.10136 * 22 21 20 24 24 C 1.54890 * 102.74947 * 37.94141 * 23 22 21 25 25 C 1.53863 * 110.03327 * 175.00254 * 21 20 19 26 26 H 0.96996 * 120.00296 * 359.97438 * 1 2 3 27 27 H 1.09001 * 113.76830 * 41.06121 * 10 9 7 28 28 H 1.08990 * 113.76792 * 269.66003 * 10 9 7 29 29 H 1.08997 * 113.74408 * 269.26485 * 11 10 9 30 30 H 1.08997 * 113.84213 * 137.95729 * 11 10 9 31 31 H 1.08993 * 109.46955 * 198.50844 * 14 12 9 32 32 H 1.09000 * 109.47050 * 318.50673 * 14 12 9 33 33 H 0.97010 * 119.99909 * 359.97438 * 15 14 12 34 34 H 1.08996 * 109.47077 * 300.00146 * 18 16 15 35 35 H 1.09004 * 109.46818 * 59.99313 * 18 16 15 36 36 H 1.08997 * 109.47516 * 300.00455 * 20 19 18 37 37 H 1.08997 * 109.47093 * 60.00648 * 20 19 18 38 38 H 1.09004 * 110.01070 * 53.60865 * 21 20 19 39 39 H 1.08995 * 110.48886 * 335.77892 * 22 21 20 40 40 H 1.09002 * 110.48822 * 98.42311 * 22 21 20 41 41 H 1.09004 * 110.75516 * 279.62485 * 23 22 21 42 42 H 1.08997 * 110.91587 * 156.33474 * 23 22 21 43 43 H 1.08995 * 110.49002 * 203.38061 * 24 23 22 44 44 H 1.09001 * 110.59875 * 80.78791 * 24 23 22 45 45 H 1.09006 * 110.03104 * 238.57019 * 25 21 20 46 46 H 1.08999 * 110.03974 * 359.95437 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7464 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1032 -2.7574 -0.0005 11 6 0.3471 -4.0829 -0.6409 12 6 1.7202 -3.8101 -0.0005 13 1 1.8328 -4.2366 0.9962 14 6 2.9025 -4.1221 -0.9203 15 7 4.1498 -3.7188 -0.2661 16 6 5.3287 -3.8988 -0.8938 17 8 5.3571 -4.3950 -2.0001 18 6 6.6118 -3.4845 -0.2207 19 8 7.7160 -3.7757 -1.0797 20 6 8.9873 -3.4189 -0.5334 21 6 10.0898 -3.7731 -1.5334 22 6 10.2001 -5.3051 -1.6776 23 6 11.7195 -5.5637 -1.8315 24 6 12.3421 -4.5317 -0.8586 25 6 11.4516 -3.2815 -1.0126 26 1 -0.4850 0.8400 0.0004 27 1 -0.7168 -2.1391 -0.6558 28 1 -0.5271 -2.8731 0.9969 29 1 0.3592 -4.0621 -1.7306 30 1 -0.1582 -4.9608 -0.2383 31 1 2.9298 -5.1919 -1.1267 32 1 2.7894 -3.5744 -1.8559 33 1 4.1270 -3.3215 0.6186 34 1 6.5845 -2.4148 -0.0135 35 1 6.7249 -4.0329 0.7146 36 1 9.0091 -2.3477 -0.3333 37 1 9.1498 -3.9654 0.3956 38 1 9.8747 -3.3207 -2.5015 39 1 9.8172 -5.8008 -0.7857 40 1 9.6637 -5.6444 -2.5638 41 1 12.0420 -5.3731 -2.8552 42 1 11.9736 -6.5801 -1.5311 43 1 13.3689 -4.3067 -1.1470 44 1 12.3069 -4.9012 0.1663 45 1 11.8979 -2.5911 -1.7284 46 1 11.3271 -2.7897 -0.0479 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754485980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:57 Heat of formation + Delta-G solvation = -46.108595 kcal Electronic energy + Delta-G solvation = -23810.463601 eV Core-core repulsion = 20315.259354 eV Total energy + Delta-G solvation = -3495.204247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.58452 -38.81340 -37.93176 -36.81943 -34.02614 -32.20506 -30.84556 -29.04641 -28.78040 -27.90439 -26.47767 -24.36904 -23.38205 -22.11096 -20.92456 -20.40057 -19.83537 -19.09621 -17.29724 -16.98962 -16.42766 -16.33718 -15.79048 -15.37820 -15.12099 -15.03683 -14.46327 -14.25493 -13.75974 -13.58435 -13.47053 -13.29811 -12.83845 -12.46515 -12.00922 -11.75152 -11.51228 -11.43120 -11.37459 -11.24612 -11.11807 -11.02890 -10.95753 -10.83334 -10.74835 -10.63836 -10.57513 -10.02339 -9.78291 -9.73713 -9.61856 -9.29220 -8.81426 -8.59098 -6.91438 -5.78172 -3.10841 2.91451 3.01947 3.36223 3.41343 3.42462 4.00605 4.36664 4.37972 4.41478 4.58667 4.91032 4.98778 5.08828 5.14811 5.16108 5.20070 5.22010 5.27571 5.37341 5.38625 5.41682 5.49244 5.55934 5.61028 5.64156 5.70705 5.77869 5.84893 5.90916 6.04141 6.08130 6.08856 6.20292 6.31090 6.39696 6.61187 6.70489 6.85020 7.03236 7.23030 7.39912 7.57548 7.87508 7.96744 8.56081 9.02297 9.69250 10.57725 11.38544 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.002959 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.164760 B = 9458.969212 C =10683.318958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.125 3.875 15 N -0.714 5.714 16 C 0.511 3.489 17 O -0.531 6.531 18 C 0.044 3.956 19 O -0.361 6.361 20 C 0.066 3.934 21 C -0.091 4.091 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.118 4.118 26 H 0.254 0.746 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.475 -9.735 1.711 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.366 5.366 16 C 0.295 3.705 17 O -0.407 6.407 18 C -0.036 4.036 19 O -0.279 6.279 20 C -0.011 4.011 21 C -0.110 4.110 22 C -0.151 4.151 23 C -0.165 4.165 24 C -0.162 4.162 25 C -0.156 4.156 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.236 0.764 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.482 -9.806 0.713 20.934 hybrid contribution 0.438 1.436 0.948 1.776 sum 18.920 -8.370 1.661 20.755 Atomic orbital electron populations 1.69801 1.04978 1.25406 1.56499 1.24762 0.95622 0.97420 1.02546 0.86277 0.78581 0.83498 0.77870 1.21098 1.21542 1.21264 1.18886 0.90093 0.81943 1.43880 0.90461 1.46075 1.02331 0.98571 1.85983 1.22201 0.87919 0.89629 0.96902 1.23776 0.96118 0.98964 1.00627 1.22508 0.92358 0.87646 0.95640 0.93290 1.21764 0.82022 0.98744 0.97365 1.45854 1.05816 1.63468 1.21434 1.20130 0.84743 0.79276 0.86326 1.90694 1.87173 1.43388 1.19456 1.22212 0.86555 1.01215 0.93624 1.88009 1.13130 1.84387 1.42335 1.22733 0.83295 0.98807 0.96216 1.21755 0.92911 0.96950 0.99372 1.22362 0.95602 0.94717 1.02451 1.22535 0.95715 0.98801 0.99472 1.22359 0.98672 0.95476 0.99711 1.22138 0.94286 0.97882 1.01296 0.93608 0.90805 0.95554 0.90475 0.92771 0.92130 0.90930 0.76360 0.90269 0.90634 0.93230 0.93216 0.89986 0.91548 0.91166 0.91557 0.91680 0.91776 0.91686 0.91399 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 11.38 55.49 0.63 -26.26 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -5.88 10.51 -15.06 -0.16 -6.03 16 8 H 0.08 1.96 7.80 -52.49 -0.41 1.55 16 9 N -0.60 -14.61 3.57 -170.74 -0.61 -15.22 16 10 C 0.16 3.62 7.51 -2.97 -0.02 3.60 16 11 C -0.16 -2.84 7.86 -25.80 -0.20 -3.04 16 12 C 0.13 2.40 4.33 -66.86 -0.29 2.11 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 14 C 0.13 2.28 5.54 -4.04 -0.02 2.26 16 15 N -0.71 -11.93 5.53 -60.29 -0.33 -12.27 16 16 C 0.51 8.84 7.91 -10.99 -0.09 8.76 16 17 O -0.53 -11.37 16.50 -14.35 -0.24 -11.61 16 18 C 0.04 0.59 6.42 36.01 0.23 0.82 16 19 O -0.36 -5.26 9.73 -55.14 -0.54 -5.80 16 20 C 0.07 0.71 4.98 37.16 0.19 0.89 16 21 C -0.09 -0.90 3.19 -89.50 -0.29 -1.18 16 22 C -0.11 -1.11 6.22 -25.07 -0.16 -1.26 16 23 C -0.13 -0.99 6.91 -24.74 -0.17 -1.16 16 24 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 25 C -0.12 -0.91 6.46 -25.62 -0.17 -1.07 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.40 6.13 8.47 -40.82 -0.35 5.78 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -32.87 373.16 -10.14 -43.01 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.24 Total: 2.36 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -1.41 Total: 3.33 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.31 Total: -53.75 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.77 Total: -17.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.87 -10.14 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754485980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.098 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds