Wall clock time and date at job start Tue Mar 31 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99760 * 2 1 4 4 H 1.48503 * 109.47245 * 240.00441 * 3 2 1 5 5 H 1.48496 * 109.46823 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46587 * 120.00622 * 3 2 1 7 7 C 1.38811 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00418 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49073 * 0.02562 * 9 7 2 11 11 C 1.53946 * 86.11679 * 155.35781 * 10 9 7 12 12 C 1.47577 * 134.49287 * 180.02562 * 9 7 2 13 13 H 1.08994 * 113.87045 * 90.32266 * 12 9 7 14 14 C 1.53006 * 113.77037 * 318.93930 * 12 9 7 15 15 N 1.46500 * 109.46998 * 78.50619 * 14 12 9 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 12 17 17 O 1.21282 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00461 * 180.02562 * 16 15 14 19 19 O 1.42895 * 109.47327 * 179.97438 * 18 16 15 20 20 C 1.42899 * 113.99780 * 179.97438 * 19 18 16 21 21 C 1.53008 * 109.47300 * 180.02562 * 20 19 18 22 22 C 1.54265 * 110.02953 * 292.17375 * 21 20 19 23 23 C 1.54892 * 104.19280 * 217.10136 * 22 21 20 24 24 C 1.54890 * 102.74947 * 37.94141 * 23 22 21 25 25 C 1.53863 * 110.03327 * 175.00254 * 21 20 19 26 26 H 0.96996 * 120.00296 * 359.97438 * 1 2 3 27 27 H 1.09001 * 113.76830 * 41.06121 * 10 9 7 28 28 H 1.08990 * 113.76792 * 269.66003 * 10 9 7 29 29 H 1.08997 * 113.74408 * 269.26485 * 11 10 9 30 30 H 1.08997 * 113.84213 * 137.95729 * 11 10 9 31 31 H 1.08993 * 109.46955 * 198.50844 * 14 12 9 32 32 H 1.09000 * 109.47050 * 318.50673 * 14 12 9 33 33 H 0.97010 * 119.99909 * 359.97438 * 15 14 12 34 34 H 1.08996 * 109.47077 * 300.00146 * 18 16 15 35 35 H 1.09004 * 109.46818 * 59.99313 * 18 16 15 36 36 H 1.08997 * 109.47516 * 300.00455 * 20 19 18 37 37 H 1.08997 * 109.47093 * 60.00648 * 20 19 18 38 38 H 1.09004 * 110.01070 * 53.60865 * 21 20 19 39 39 H 1.08995 * 110.48886 * 335.77892 * 22 21 20 40 40 H 1.09002 * 110.48822 * 98.42311 * 22 21 20 41 41 H 1.09004 * 110.75516 * 279.62485 * 23 22 21 42 42 H 1.08997 * 110.91587 * 156.33474 * 23 22 21 43 43 H 1.08995 * 110.49002 * 203.38061 * 24 23 22 44 44 H 1.09001 * 110.59875 * 80.78791 * 24 23 22 45 45 H 1.09006 * 110.03104 * 238.57019 * 25 21 20 46 46 H 1.08999 * 110.03974 * 359.95437 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7464 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1032 -2.7574 -0.0005 11 6 0.3471 -4.0829 -0.6409 12 6 1.7202 -3.8101 -0.0005 13 1 1.8328 -4.2366 0.9962 14 6 2.9025 -4.1221 -0.9203 15 7 4.1498 -3.7188 -0.2661 16 6 5.3287 -3.8988 -0.8938 17 8 5.3571 -4.3950 -2.0001 18 6 6.6118 -3.4845 -0.2207 19 8 7.7160 -3.7757 -1.0797 20 6 8.9873 -3.4189 -0.5334 21 6 10.0898 -3.7731 -1.5334 22 6 10.2001 -5.3051 -1.6776 23 6 11.7195 -5.5637 -1.8315 24 6 12.3421 -4.5317 -0.8586 25 6 11.4516 -3.2815 -1.0126 26 1 -0.4850 0.8400 0.0004 27 1 -0.7168 -2.1391 -0.6558 28 1 -0.5271 -2.8731 0.9969 29 1 0.3592 -4.0621 -1.7306 30 1 -0.1582 -4.9608 -0.2383 31 1 2.9298 -5.1919 -1.1267 32 1 2.7894 -3.5744 -1.8559 33 1 4.1270 -3.3215 0.6186 34 1 6.5845 -2.4148 -0.0135 35 1 6.7249 -4.0329 0.7146 36 1 9.0091 -2.3477 -0.3333 37 1 9.1498 -3.9654 0.3956 38 1 9.8747 -3.3207 -2.5015 39 1 9.8172 -5.8008 -0.7857 40 1 9.6637 -5.6444 -2.5638 41 1 12.0420 -5.3731 -2.8552 42 1 11.9736 -6.5801 -1.5311 43 1 13.3689 -4.3067 -1.1470 44 1 12.3069 -4.9012 0.1663 45 1 11.8979 -2.5911 -1.7284 46 1 11.3271 -2.7897 -0.0479 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754485980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:57 Heat of formation + Delta-G solvation = -66.664577 kcal Electronic energy + Delta-G solvation = -23811.354975 eV Core-core repulsion = 20315.259354 eV Total energy + Delta-G solvation = -3496.095622 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90141 -39.82485 -39.39559 -37.78770 -35.52045 -34.19767 -31.67413 -30.24292 -29.78828 -29.53446 -27.74622 -25.28531 -25.17152 -23.67978 -21.74350 -21.54077 -20.87285 -20.54213 -18.82340 -18.11699 -17.87208 -17.42232 -16.99821 -16.81126 -16.21449 -16.15934 -15.82706 -15.60053 -15.39810 -14.81645 -14.74052 -14.21284 -14.13690 -13.66684 -13.39854 -13.22693 -12.91152 -12.79988 -12.68507 -12.58999 -12.31887 -12.16447 -11.97936 -11.90249 -11.84590 -11.70035 -11.53038 -11.48806 -11.36082 -11.33581 -10.82952 -10.75696 -10.65622 -10.04392 -8.87793 -7.85715 -5.17567 1.44181 1.47450 1.52539 1.58388 1.86665 2.47959 2.96542 3.34679 3.39893 3.69290 3.71007 3.76889 3.90733 4.00518 4.14009 4.18338 4.23690 4.34588 4.37208 4.41145 4.49402 4.56906 4.63488 4.68775 4.71971 4.75504 4.84321 4.88069 4.91446 5.06160 5.06784 5.09896 5.10740 5.25070 5.34542 5.35168 5.42853 5.46181 5.48521 5.62068 5.76007 5.99264 6.09706 6.57320 6.96275 7.23290 7.66717 8.61413 9.31159 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.002959 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.164760 B = 9458.969212 C =10683.318958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.214 4.214 8 H 0.087 0.913 9 N -0.631 5.631 10 C 0.149 3.851 11 C -0.132 4.132 12 C 0.134 3.866 13 H 0.076 0.924 14 C 0.133 3.867 15 N -0.708 5.708 16 C 0.506 3.494 17 O -0.579 6.579 18 C 0.049 3.951 19 O -0.394 6.394 20 C 0.062 3.938 21 C -0.095 4.095 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.114 4.114 26 H 0.245 0.755 27 H 0.037 0.963 28 H 0.024 0.976 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.412 0.588 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.677 -10.620 3.252 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.197 1.197 7 C -0.343 4.343 8 H 0.105 0.895 9 N -0.358 5.358 10 C 0.024 3.976 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.360 5.360 16 C 0.293 3.707 17 O -0.459 6.459 18 C -0.030 4.030 19 O -0.313 6.313 20 C -0.014 4.014 21 C -0.113 4.113 22 C -0.154 4.154 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.152 4.152 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.247 0.753 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.715 -10.716 2.288 23.435 hybrid contribution -0.244 1.622 0.445 1.700 sum 20.471 -9.094 2.734 22.566 Atomic orbital electron populations 1.69993 1.06348 1.25270 1.58947 1.25538 0.96421 1.00604 1.03924 0.85312 0.77245 0.79645 0.78149 1.21131 1.22575 1.19689 1.19293 0.90772 0.83044 1.41192 0.89532 1.46433 1.03299 1.00034 1.85995 1.22170 0.87142 0.91766 0.96506 1.23578 0.95250 0.97889 1.00387 1.22673 0.93057 0.84559 0.96864 0.90703 1.21540 0.82554 0.99320 0.95735 1.45809 1.05403 1.63145 1.21667 1.20898 0.85987 0.78085 0.85749 1.90672 1.87906 1.45649 1.21661 1.22252 0.84271 1.02562 0.93954 1.87979 1.14577 1.84919 1.43790 1.22946 0.81744 0.99751 0.96913 1.21800 0.94104 0.96842 0.98596 1.22354 0.96905 0.94820 1.01332 1.22530 0.94192 0.99689 0.99896 1.22363 0.99029 0.94667 0.99816 1.22128 0.92913 0.98319 1.01837 0.94605 0.94428 0.95805 0.90598 0.88663 0.90245 0.94313 0.75258 0.88591 0.87044 0.92149 0.91349 0.91887 0.91703 0.93330 0.91603 0.90870 0.90573 0.90974 0.91010 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.37 11.38 21.65 0.25 -57.12 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.21 -11.35 10.51 84.03 0.88 -10.47 16 8 H 0.09 4.29 7.80 -2.91 -0.02 4.27 16 9 N -0.63 -30.21 3.57 -694.11 -2.48 -32.69 16 10 C 0.15 6.82 7.51 86.48 0.65 7.47 16 11 C -0.13 -4.55 7.86 31.26 0.25 -4.30 16 12 C 0.13 4.82 4.33 45.10 0.20 5.01 16 13 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 14 C 0.13 4.65 5.54 86.38 0.48 5.12 16 15 N -0.71 -22.36 5.53 -463.06 -2.56 -24.92 16 16 C 0.51 16.88 7.91 87.66 0.69 17.57 16 17 O -0.58 -24.82 16.50 16.00 0.26 -24.56 16 18 C 0.05 1.19 6.42 71.24 0.46 1.65 16 19 O -0.39 -11.00 9.73 -129.94 -1.26 -12.27 16 20 C 0.06 1.21 4.98 71.98 0.36 1.56 16 21 C -0.09 -1.77 3.19 -10.07 -0.03 -1.80 16 22 C -0.12 -2.21 6.22 31.67 0.20 -2.01 16 23 C -0.13 -1.78 6.91 31.89 0.22 -1.56 16 24 C -0.12 -1.41 6.83 31.67 0.22 -1.19 16 25 C -0.11 -1.51 6.46 31.32 0.20 -1.31 16 26 H 0.24 14.48 8.31 -92.71 -0.77 13.70 16 27 H 0.04 1.97 7.15 -2.39 -0.02 1.96 16 28 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 30 H 0.10 2.54 8.14 -2.39 -0.02 2.53 16 31 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 11.46 8.47 -92.70 -0.79 10.68 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.06 8.00 -2.39 -0.02 1.04 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.06 1.23 7.76 -2.39 -0.02 1.21 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.08 0.86 7.67 -2.39 -0.02 0.84 16 Total: -1.00 -73.16 373.16 1.62 -71.54 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.16 Total: 20.57 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.23 Total: 12.16 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.79 Total: -114.73 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.00 Total: -36.83 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.16 1.62 -71.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754485980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.872 kcal (2) G-P(sol) polarization free energy of solvation -73.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds