Wall clock time and date at job start Tue Mar 31 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47062 * 2 1 4 4 C 1.50705 * 109.47088 * 239.99779 * 2 1 3 5 5 O 1.21282 * 119.99934 * 253.91661 * 4 2 1 6 6 N 1.34778 * 119.99681 * 73.91195 * 4 2 1 7 7 C 1.46501 * 120.00040 * 3.70439 * 6 4 2 8 8 C 1.46498 * 119.99760 * 183.70424 * 6 4 2 9 9 C 1.52996 * 109.47347 * 90.00208 * 8 6 4 10 10 H 1.09000 * 109.46954 * 304.99895 * 9 8 6 11 11 O 1.42907 * 109.47258 * 64.99656 * 9 8 6 12 12 C 1.53000 * 109.47339 * 184.99842 * 9 8 6 13 13 N 1.46497 * 109.47078 * 179.97438 * 12 9 8 14 14 C 1.36940 * 119.99779 * 180.02562 * 13 12 9 15 15 H 1.07994 * 120.00151 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99757 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00335 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46873 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47143 * 119.99907 * 18 16 14 21 21 H 1.48498 * 109.47579 * 240.00434 * 18 16 14 22 22 N 1.46504 * 109.46977 * 120.00255 * 2 1 3 23 23 C 1.34947 * 126.04000 * 34.71054 * 22 2 1 24 24 C 1.35313 * 107.74830 * 180.26163 * 23 22 2 25 25 C 1.39870 * 107.91900 * 0.02562 * 24 23 22 26 26 N 1.30839 * 108.20474 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47341 * 55.64854 * 1 2 3 28 28 H 1.08996 * 109.47457 * 175.65095 * 1 2 3 29 29 H 1.09004 * 109.46971 * 295.64595 * 1 2 3 30 30 H 1.09002 * 109.47156 * 84.69422 * 7 6 4 31 31 H 1.08997 * 109.46882 * 204.69214 * 7 6 4 32 32 H 1.09003 * 109.47300 * 324.69756 * 7 6 4 33 33 H 1.09006 * 109.46809 * 210.00343 * 8 6 4 34 34 H 1.09000 * 109.47185 * 329.99786 * 8 6 4 35 35 H 0.96702 * 113.99555 * 60.00046 * 11 9 8 36 36 H 1.09000 * 109.47141 * 299.99938 * 12 9 8 37 37 H 1.08996 * 109.46906 * 59.99864 * 12 9 8 38 38 H 0.96991 * 120.00310 * 0.02562 * 13 12 9 39 39 H 0.97005 * 120.00351 * 180.02562 * 17 16 14 40 40 H 1.07999 * 126.12401 * 0.26767 * 23 22 2 41 41 H 1.08003 * 126.04316 * 180.02562 * 24 23 22 42 42 H 1.07996 * 125.89802 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.5088 -1.8219 -1.1369 6 7 1.9520 -0.1108 -2.4348 7 6 1.4517 1.2623 -2.5375 8 6 2.3649 -0.8321 -3.6412 9 6 1.1656 -1.5845 -4.2212 10 1 0.7362 -2.2296 -3.4548 11 8 0.1814 -0.6460 -4.6602 12 6 1.6228 -2.4362 -5.4072 13 7 0.4746 -3.1570 -5.9621 14 6 0.6426 -3.9883 -7.0374 15 1 1.6214 -4.1120 -7.4765 16 6 -0.4455 -4.6709 -7.5636 17 7 -1.6387 -4.5189 -7.0294 18 14 -0.2165 -5.8042 -9.0307 19 1 1.2107 -5.8004 -9.4412 20 1 -0.6202 -7.1838 -8.6583 21 1 -1.0577 -5.3298 -10.1588 22 7 2.0183 -0.6907 1.1962 23 6 1.4372 -1.7526 1.7926 24 6 2.1914 -2.0870 2.8652 25 6 3.2701 -1.1987 2.9266 26 7 3.1675 -0.3614 1.9265 27 1 -0.3634 0.5799 -0.8484 28 1 -0.3634 -1.0246 -0.0779 29 1 -0.3633 0.4448 0.9265 30 1 2.2682 1.9611 -2.3552 31 1 1.0477 1.4281 -3.5362 32 1 0.6670 1.4195 -1.7974 33 1 2.7397 -0.1221 -4.3786 34 1 3.1519 -1.5426 -3.3882 35 1 0.4948 -0.0382 -5.3439 36 1 2.0523 -1.7911 -6.1736 37 1 2.3735 -3.1520 -5.0724 38 1 -0.4046 -3.0456 -5.5681 39 1 -2.3991 -4.9962 -7.3969 40 1 0.5324 -2.2470 1.4714 41 1 1.9952 -2.8968 3.5524 42 1 4.0525 -1.2032 3.6710 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755772438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:48 Heat of formation + Delta-G solvation = -8.697248 kcal Electronic energy + Delta-G solvation = -24176.352170 eV Core-core repulsion = 20579.229857 eV Total energy + Delta-G solvation = -3597.122313 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33998 -41.02742 -38.91384 -36.57993 -35.93739 -35.48758 -33.25340 -31.40792 -30.95077 -30.23707 -27.93155 -27.33787 -25.57189 -24.48830 -22.83237 -22.10259 -21.87179 -20.30167 -19.27258 -18.48139 -18.41001 -17.62921 -17.07985 -16.58479 -16.47762 -16.32165 -15.72248 -15.46109 -15.35694 -14.90580 -14.64728 -14.46412 -14.36540 -14.14071 -13.74553 -13.63994 -13.50776 -13.44803 -13.04087 -12.94345 -12.81378 -12.68868 -12.53371 -12.17667 -12.02792 -11.85663 -11.69874 -11.35749 -11.07283 -11.01898 -10.38406 -9.66363 -9.53776 -9.04618 -7.97406 -5.27580 0.83838 1.30464 1.40292 1.45436 1.46909 1.56884 1.95475 2.00696 2.53362 3.21776 3.33593 3.43835 3.49877 3.71420 3.72877 3.93032 3.96545 4.11925 4.12911 4.19880 4.40767 4.46775 4.52980 4.55521 4.63327 4.67862 4.75217 4.82547 4.87680 4.90833 5.12094 5.14427 5.16482 5.38203 5.45143 5.73083 5.99110 6.22205 6.23607 6.72782 6.86825 6.93905 7.30180 8.05251 8.28790 9.26080 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.003069 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.578691 B = 9120.945976 C = 9592.925970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.144 0.856 4 C 0.492 3.508 5 O -0.576 6.576 6 N -0.596 5.596 7 C 0.059 3.941 8 C 0.096 3.904 9 C 0.109 3.891 10 H 0.064 0.936 11 O -0.557 6.557 12 C 0.123 3.877 13 N -0.740 5.740 14 C -0.249 4.249 15 H 0.076 0.924 16 C -0.076 4.076 17 N -0.968 5.968 18 Si 0.977 3.023 19 H -0.265 1.265 20 H -0.294 1.294 21 H -0.290 1.290 22 N -0.367 5.367 23 C 0.060 3.940 24 C -0.285 4.285 25 C 0.043 3.957 26 N -0.334 5.334 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.385 0.615 36 H 0.042 0.958 37 H 0.018 0.982 38 H 0.375 0.625 39 H 0.252 0.748 40 H 0.184 0.816 41 H 0.168 0.832 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 16.403 17.191 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.162 0.838 4 C 0.279 3.721 5 O -0.455 6.455 6 N -0.328 5.328 7 C -0.082 4.082 8 C -0.028 4.028 9 C 0.048 3.952 10 H 0.082 0.918 11 O -0.364 6.364 12 C -0.005 4.005 13 N -0.383 5.383 14 C -0.381 4.381 15 H 0.094 0.906 16 C -0.269 4.269 17 N -0.619 5.619 18 Si 0.805 3.195 19 H -0.190 1.190 20 H -0.221 1.221 21 H -0.217 1.217 22 N -0.149 5.149 23 C -0.086 4.086 24 C -0.313 4.313 25 C -0.143 4.143 26 N -0.155 5.155 27 H 0.131 0.869 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.234 0.766 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.207 0.793 39 H 0.060 0.940 40 H 0.201 0.799 41 H 0.186 0.814 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.718 16.543 16.817 24.528 hybrid contribution -0.296 -1.574 -0.756 1.771 sum 6.422 14.970 16.061 22.876 Atomic orbital electron populations 1.22257 0.88209 1.04610 1.06476 1.21271 0.97772 0.97505 0.79247 0.83832 1.21366 0.78543 0.86260 0.85919 1.90747 1.46413 1.21828 1.86490 1.47744 1.63630 1.16404 1.05009 1.22402 1.00521 0.79343 1.05899 1.22074 0.96094 0.97540 0.87099 1.22105 0.89293 0.89541 0.94242 0.91810 1.86580 1.40406 1.48882 1.60492 1.21424 0.90335 0.94242 0.94492 1.42435 1.06961 1.52706 1.36223 1.19687 0.94460 1.17863 1.06047 0.90580 1.25632 0.95280 1.02929 1.03032 1.69851 0.99613 1.47607 1.44815 0.85031 0.77774 0.77930 0.78748 1.18951 1.22140 1.21654 1.48422 1.19561 1.25253 1.21697 1.22878 1.00535 0.90502 0.94655 1.21842 0.99050 1.06822 1.03627 1.24426 0.99653 0.93360 0.96862 1.77242 1.03353 1.26254 1.08681 0.86904 0.91989 0.88211 0.90285 0.88611 0.89112 0.86208 0.90844 0.76591 0.94040 0.96368 0.79274 0.93959 0.79945 0.81411 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.47 71.98 0.61 -1.56 16 2 C 0.15 2.90 2.90 44.24 0.13 3.03 16 3 H 0.14 2.12 7.48 -2.39 -0.02 2.10 16 4 C 0.49 13.11 6.97 87.66 0.61 13.72 16 5 O -0.58 -21.46 15.89 -3.04 -0.05 -21.51 16 6 N -0.60 -12.64 2.84 -846.75 -2.40 -15.04 16 7 C 0.06 0.67 9.63 127.77 1.23 1.90 16 8 C 0.10 2.33 5.07 86.38 0.44 2.77 16 9 C 0.11 3.49 3.30 30.59 0.10 3.59 16 10 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 11 O -0.56 -16.41 12.01 -148.98 -1.79 -18.19 16 12 C 0.12 4.85 5.92 86.38 0.51 5.37 16 13 N -0.74 -38.75 5.49 -343.46 -1.89 -40.64 16 14 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 15 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 16 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 17 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 18 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 N -0.37 -9.03 3.12 -331.06 -1.03 -10.06 16 23 C 0.06 1.37 10.41 83.54 0.87 2.24 16 24 C -0.28 -5.97 10.80 21.99 0.24 -5.73 16 25 C 0.04 0.93 12.03 85.24 1.02 1.96 16 26 N -0.33 -8.92 12.58 -57.02 -0.72 -9.64 16 27 H 0.11 1.14 5.80 -2.39 -0.01 1.13 16 28 H 0.06 1.05 7.38 -2.39 -0.02 1.04 16 29 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.95 7.22 -2.39 -0.02 0.93 16 32 H 0.09 0.72 4.55 -2.39 -0.01 0.71 16 33 H 0.12 2.05 8.07 -2.38 -0.02 2.03 16 34 H 0.07 2.14 7.37 -2.39 -0.02 2.12 16 35 H 0.39 8.28 9.04 -74.06 -0.67 7.61 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.38 21.37 7.54 -92.71 -0.70 20.67 16 39 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 40 H 0.18 3.46 7.38 -2.91 -0.02 3.44 16 41 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.21 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -83.43 351.66 1.18 -82.24 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.32 Total: 34.54 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 7.07 Total: 9.89 kcal Atomic # 7 Polarization: -130.01 SS G_CDS: -5.76 Total: -135.77 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.84 Total: -39.70 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -83.43 1.18 -82.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755772438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.547 kcal (2) G-P(sol) polarization free energy of solvation -83.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds