Wall clock time and date at job start Tue Mar 31 2020 03:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46729 * 2 1 4 4 C 1.52991 * 109.47348 * 239.99728 * 2 1 3 5 5 C 1.50701 * 109.47098 * 59.99892 * 4 2 1 6 6 O 1.21276 * 120.00250 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00166 * 179.97438 * 5 4 2 8 8 C 1.48210 * 119.97390 * 179.97438 * 7 5 4 9 9 C 1.47135 * 110.34027 * 102.46737 * 8 7 5 10 10 C 1.53795 * 111.83965 * 58.30213 * 9 8 7 11 11 N 1.43461 * 107.96321 * 281.66291 * 10 9 8 12 12 C 1.36932 * 118.94014 * 273.61438 * 11 10 9 13 13 H 1.08000 * 120.00642 * 27.34501 * 12 11 10 14 14 C 1.38818 * 120.00041 * 207.34710 * 12 11 10 15 15 N 1.31617 * 119.99693 * 26.48364 * 14 12 11 16 16 Si 1.86798 * 120.00152 * 206.48372 * 14 12 11 17 17 H 1.48497 * 109.47316 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47159 * 59.99823 * 16 14 12 19 19 H 1.48496 * 109.47169 * 300.00017 * 16 14 12 20 20 C 1.48857 * 122.12057 * 93.88536 * 11 10 9 21 21 C 1.43631 * 119.96608 * 359.97438 * 7 5 4 22 22 C 1.53002 * 109.47336 * 119.99340 * 2 1 3 23 23 C 1.53009 * 117.49639 * 13.62597 * 22 2 1 24 24 C 1.52997 * 59.99872 * 252.50962 * 23 22 2 25 25 H 1.09005 * 109.46678 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47631 * 299.99865 * 1 2 3 27 27 H 1.09002 * 109.47088 * 60.00642 * 1 2 3 28 28 H 0.96696 * 113.99492 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47327 * 299.99719 * 4 2 1 30 30 H 1.09000 * 109.47243 * 179.97438 * 4 2 1 31 31 H 1.09009 * 109.32302 * 342.20877 * 8 7 5 32 32 H 1.08998 * 109.18437 * 222.64984 * 8 7 5 33 33 H 1.08992 * 109.01216 * 297.69381 * 9 8 7 34 34 H 1.09002 * 108.94340 * 178.86748 * 9 8 7 35 35 H 1.09002 * 109.76207 * 162.04422 * 10 9 8 36 36 H 1.09002 * 109.80847 * 41.30878 * 10 9 8 37 37 H 0.97002 * 120.00559 * 5.78803 * 15 14 12 38 38 H 1.09004 * 109.48050 * 80.35009 * 20 11 10 39 39 H 1.08999 * 109.48208 * 200.38810 * 20 11 10 40 40 H 1.08997 * 108.87402 * 31.46388 * 21 7 5 41 41 H 1.08996 * 108.87205 * 150.00733 * 21 7 5 42 42 H 1.08996 * 115.55269 * 159.33208 * 22 2 1 43 43 H 1.08994 * 117.49687 * 359.97438 * 23 22 2 44 44 H 1.08994 * 117.49568 * 145.01849 * 23 22 2 45 45 H 1.09002 * 117.50077 * 252.50992 * 24 23 22 46 46 H 1.09005 * 117.50149 * 107.48917 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0109 -2.4796 6 8 0.8400 0.9748 -2.3685 7 7 1.8637 -0.4711 -3.7038 8 6 1.3689 0.2276 -4.9135 9 6 2.4379 1.0490 -5.5030 10 6 3.6683 0.2049 -5.8757 11 7 4.4062 -0.0566 -4.6735 12 6 5.3298 0.8614 -4.2500 13 1 5.2123 1.9038 -4.5068 14 6 6.4174 0.4522 -3.4906 15 7 6.8686 -0.7796 -3.5977 16 14 7.2405 1.6496 -2.3167 17 1 8.3686 0.9720 -1.6288 18 1 6.2530 2.1125 -1.3088 19 1 7.7538 2.8161 -3.0789 20 6 4.2044 -1.2964 -3.8748 21 6 2.6905 -1.6383 -3.8347 22 6 2.0401 -0.7211 1.2493 23 6 1.0320 -1.5508 2.0472 24 6 1.5415 -0.2211 2.6067 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 2.9702 1.4237 -0.0004 29 1 1.6767 -1.7490 -1.2491 30 1 3.1300 -0.7208 -1.2493 31 1 0.5298 0.8684 -4.6421 32 1 1.0374 -0.5110 -5.6433 33 1 2.7358 1.8127 -4.7847 34 1 2.0561 1.5357 -6.4005 35 1 4.2931 0.7550 -6.5794 36 1 3.3489 -0.7358 -6.3241 37 1 6.4967 -1.3760 -4.2662 38 1 4.7537 -2.1182 -4.3342 39 1 4.5683 -1.1381 -2.8597 40 1 2.5005 -2.3015 -2.9908 41 1 2.4257 -2.1563 -4.7564 42 1 3.0642 -1.0900 1.1941 43 1 0.0054 -1.5825 1.6822 44 1 1.3929 -2.4658 2.5168 45 1 2.2377 -0.2612 3.4445 46 1 0.8503 0.6217 2.6096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981000310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:43 Heat of formation + Delta-G solvation = -28.543190 kcal Electronic energy + Delta-G solvation = -26418.367027 eV Core-core repulsion = 22923.924473 eV Total energy + Delta-G solvation = -3494.442554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.18755 -38.70006 -36.97440 -35.21750 -34.36721 -33.03951 -31.32047 -30.71618 -28.14692 -27.25558 -25.32149 -23.90605 -23.70245 -22.40914 -21.73612 -19.79314 -19.46799 -18.46409 -17.46060 -16.90417 -16.37082 -15.99036 -15.49190 -15.21103 -14.47087 -14.27925 -13.98499 -13.94490 -13.54615 -13.29392 -12.92926 -12.79565 -12.68457 -12.34518 -12.24323 -12.18769 -11.60020 -11.53294 -11.30043 -11.10356 -11.00288 -10.72071 -10.69576 -10.48195 -10.32594 -10.30616 -10.27838 -10.11403 -10.02792 -9.70792 -9.39776 -9.04387 -8.34465 -8.06517 -6.90479 -6.08825 -3.26104 3.13617 3.47154 3.48588 3.50228 3.68199 3.73046 4.52726 4.57814 4.62659 4.80271 4.96505 5.00452 5.09489 5.15076 5.23390 5.39191 5.42688 5.53542 5.55503 5.56719 5.68606 5.70371 5.82525 5.86375 5.94200 5.96016 5.96823 6.00710 6.07016 6.13056 6.18871 6.28585 6.35974 6.46232 6.59759 6.67869 6.76085 6.91190 6.97340 7.21253 7.95397 8.02756 8.05044 8.54729 8.74096 9.13210 9.82145 10.21812 11.17004 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.006583 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.623495 B = 4252.083549 C = 5442.856301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.183 3.817 3 O -0.539 6.539 4 C -0.166 4.166 5 C 0.524 3.476 6 O -0.533 6.533 7 N -0.589 5.589 8 C 0.131 3.869 9 C -0.168 4.168 10 C 0.164 3.836 11 N -0.593 5.593 12 C -0.349 4.349 13 H 0.053 0.947 14 C -0.020 4.020 15 N -0.915 5.915 16 Si 1.055 2.945 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.293 1.293 20 C 0.138 3.862 21 C 0.089 3.911 22 C -0.187 4.187 23 C -0.179 4.179 24 C -0.165 4.165 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.373 0.627 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.030 0.970 37 H 0.267 0.733 38 H 0.034 0.966 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.275 -4.384 5.478 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.142 3.858 3 O -0.344 6.344 4 C -0.206 4.206 5 C 0.312 3.688 6 O -0.411 6.411 7 N -0.321 5.321 8 C 0.009 3.991 9 C -0.209 4.209 10 C 0.036 3.964 11 N -0.316 5.316 12 C -0.478 4.478 13 H 0.071 0.929 14 C -0.222 4.222 15 N -0.556 5.556 16 Si 0.885 3.115 17 H -0.212 1.212 18 H -0.220 1.220 19 H -0.220 1.220 20 C 0.012 3.988 21 C -0.038 4.038 22 C -0.206 4.206 23 C -0.216 4.216 24 C -0.202 4.202 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.220 0.780 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.103 -3.597 6.676 13.445 hybrid contribution -0.211 -0.389 -1.268 1.343 sum -11.314 -3.986 5.407 13.158 Atomic orbital electron populations 1.22080 0.92891 1.01436 1.04461 1.20220 0.94623 0.81857 0.89111 1.86632 1.26332 1.24757 1.96685 1.22428 1.03551 1.00727 0.93868 1.20248 0.79957 0.84361 0.84197 1.90598 1.38556 1.25852 1.86054 1.47384 1.49785 1.29248 1.05702 1.20517 0.97105 0.95788 0.85671 1.21822 0.98255 1.00628 1.00162 1.20282 0.91438 0.95752 0.88900 1.43659 1.43796 1.21247 1.22849 1.19912 1.02928 0.89360 1.35626 0.92924 1.25715 0.94116 1.00227 1.02169 1.70824 1.39965 1.08155 1.36616 0.83670 0.76095 0.74949 0.76825 1.21185 1.21982 1.21995 1.22170 0.90440 0.89207 0.97015 1.21992 0.93675 0.86805 1.01284 1.23108 0.99600 1.04440 0.93438 1.23095 0.99521 0.95064 1.03929 1.22840 1.03700 0.97737 0.95953 0.92098 0.92570 0.88948 0.77994 0.88848 0.88234 0.90439 0.92420 0.91188 0.92772 0.93563 0.95170 0.92158 0.94828 0.91429 0.91474 0.91949 0.87562 0.88114 0.89013 0.89031 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 7.18 37.16 0.27 -1.88 16 2 C 0.18 2.69 0.80 -90.62 -0.07 2.61 16 3 O -0.54 -9.32 11.85 -53.48 -0.63 -9.95 16 4 C -0.17 -2.53 3.50 -27.89 -0.10 -2.63 16 5 C 0.52 9.60 7.23 -10.98 -0.08 9.52 16 6 O -0.53 -11.18 12.39 -12.69 -0.16 -11.33 16 7 N -0.59 -10.36 2.46 -176.41 -0.43 -10.79 16 8 C 0.13 2.20 5.70 -5.92 -0.03 2.16 16 9 C -0.17 -3.09 5.64 -29.13 -0.16 -3.25 16 10 C 0.16 3.33 5.63 -5.24 -0.03 3.30 16 11 N -0.59 -13.92 2.38 -171.76 -0.41 -14.33 16 12 C -0.35 -9.41 9.12 -15.06 -0.14 -9.55 16 13 H 0.05 1.49 7.96 -52.49 -0.42 1.07 16 14 C -0.02 -0.55 4.60 -17.43 -0.08 -0.63 16 15 N -0.92 -26.12 12.64 55.49 0.70 -25.41 16 16 Si 1.05 24.85 29.99 -169.99 -5.10 19.75 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.14 2.91 5.09 -1.54 -0.01 2.90 16 21 C 0.09 1.46 5.06 -4.37 -0.02 1.44 16 22 C -0.19 -2.31 5.32 -90.61 -0.48 -2.79 16 23 C -0.18 -1.85 9.65 -26.73 -0.26 -2.11 16 24 C -0.17 -1.85 9.85 -26.73 -0.26 -2.11 16 25 H 0.06 0.72 6.74 -51.93 -0.35 0.37 16 26 H 0.06 0.75 6.96 -51.93 -0.36 0.39 16 27 H 0.09 1.56 5.51 -51.93 -0.29 1.28 16 28 H 0.37 5.84 9.04 45.56 0.41 6.25 16 29 H 0.09 1.20 7.37 -51.93 -0.38 0.82 16 30 H 0.10 1.64 7.34 -51.93 -0.38 1.26 16 31 H 0.08 1.34 7.13 -51.92 -0.37 0.97 16 32 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.07 1.56 7.91 -51.93 -0.41 1.15 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 36 H 0.03 0.56 7.59 -51.93 -0.39 0.16 16 37 H 0.27 7.64 6.38 -40.82 -0.26 7.38 16 38 H 0.03 0.74 7.11 -51.93 -0.37 0.37 16 39 H 0.07 1.58 6.24 -51.93 -0.32 1.26 16 40 H 0.07 0.95 6.38 -51.93 -0.33 0.61 16 41 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 42 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.10 1.00 5.89 -51.93 -0.31 0.69 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.10 1.14 7.29 -51.93 -0.38 0.76 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -31.47 346.60 -8.90 -40.38 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.63 Total: 9.49 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.46 Total: -3.02 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.14 Total: -50.53 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.79 Total: -21.29 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.10 Total: 19.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.47 -8.90 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981000310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.833 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds