Wall clock time and date at job start Tue Mar 31 2020 03:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47388 * 2 1 4 4 C 1.52998 * 109.47073 * 119.99836 * 2 1 3 5 5 N 1.46497 * 109.47106 * 65.50220 * 4 2 1 6 6 C 1.46268 * 118.71848 * 84.09582 * 5 4 2 7 7 C 1.52558 * 109.56999 * 163.92326 * 6 5 4 8 8 C 1.53382 * 113.83760 * 176.52513 * 7 6 5 9 9 N 1.48071 * 86.02399 * 91.25456 * 8 7 6 10 10 C 1.46900 * 110.99913 * 137.23117 * 9 8 7 11 11 C 1.53001 * 109.47132 * 70.54430 * 10 9 8 12 12 C 1.50702 * 109.47201 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99477 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00113 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99757 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00054 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46960 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46857 * 120.00278 * 16 14 12 19 19 H 1.48493 * 109.47142 * 240.00343 * 16 14 12 20 20 C 1.48060 * 90.84377 * 24.30407 * 9 8 7 21 21 O 1.42685 * 112.47422 * 45.21258 * 7 6 5 22 22 C 1.43051 * 112.94932 * 295.89926 * 21 7 6 23 23 C 1.33724 * 118.71576 * 264.09336 * 5 4 2 24 24 O 1.21280 * 118.37837 * 3.26044 * 23 5 4 25 25 H 1.09006 * 109.47075 * 300.00150 * 1 2 3 26 26 H 1.09004 * 109.47076 * 59.99659 * 1 2 3 27 27 H 1.08995 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47397 * 239.99626 * 2 1 3 29 29 H 1.09000 * 109.46489 * 304.98251 * 3 2 1 30 30 H 1.09003 * 109.46729 * 64.97638 * 3 2 1 31 31 H 1.08991 * 109.47013 * 184.98044 * 3 2 1 32 32 H 1.08998 * 109.47237 * 305.49902 * 4 2 1 33 33 H 1.09007 * 109.47218 * 185.49826 * 4 2 1 34 34 H 1.08996 * 109.46055 * 43.88860 * 6 5 4 35 35 H 1.09004 * 109.45680 * 283.94864 * 6 5 4 36 36 H 1.08998 * 113.78493 * 205.52844 * 8 7 6 37 37 H 1.08996 * 113.78624 * 336.97847 * 8 7 6 38 38 H 1.08996 * 109.46991 * 190.54891 * 10 9 8 39 39 H 1.09003 * 109.47187 * 310.54851 * 10 9 8 40 40 H 1.08996 * 109.47559 * 300.00114 * 11 10 9 41 41 H 1.09003 * 109.46741 * 60.00148 * 11 10 9 42 42 H 0.97001 * 119.99645 * 179.97438 * 15 14 12 43 43 H 1.08998 * 113.78350 * 221.42032 * 20 9 8 44 44 H 1.08996 * 113.78616 * 89.97279 * 20 9 8 45 45 H 1.09001 * 109.34645 * 167.53136 * 22 21 7 46 46 H 1.09004 * 109.34877 * 287.08623 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6628 -2.1353 1.1849 6 6 2.5178 -3.0575 0.4380 7 6 2.1798 -4.4942 0.8241 8 6 2.9638 -5.5493 0.0338 9 7 3.9607 -5.4776 1.1263 10 6 4.4276 -6.8189 1.5018 11 6 5.3013 -7.3870 0.3815 12 6 5.7808 -8.7627 0.7670 13 1 5.4909 -9.1893 1.7159 14 6 6.5885 -9.4771 -0.0922 15 7 6.9410 -8.9577 -1.2478 16 14 7.1823 -11.1826 0.3853 17 1 6.6488 -11.5352 1.7257 18 1 6.7027 -12.1713 -0.6136 19 1 8.6666 -11.1974 0.4233 20 6 2.9262 -4.9929 2.0681 21 8 0.7734 -4.7318 0.8637 22 6 0.1064 -3.9660 1.8711 23 6 0.5502 -2.5326 1.8114 24 8 -0.1345 -1.6939 2.3579 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6056 1.9814 -0.8420 30 1 1.7513 1.9300 0.9312 31 1 3.1263 1.4438 -0.0892 32 1 1.5985 -0.2674 2.1365 33 1 3.1256 -0.6367 1.2999 34 1 3.5627 -2.8548 0.6728 35 1 2.3530 -2.9206 -0.6308 36 1 2.4573 -6.5119 -0.0366 37 1 3.3370 -5.1922 -0.9260 38 1 5.0101 -6.7567 2.4209 39 1 3.5690 -7.4716 1.6593 40 1 4.7187 -7.4491 -0.5376 41 1 6.1599 -6.7342 0.2240 42 1 7.5096 -9.4601 -1.8521 43 1 3.2694 -4.1936 2.7248 44 1 2.4085 -5.7905 2.6010 45 1 -0.9704 -4.0177 1.7102 46 1 0.3429 -4.3767 2.8527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:11 Heat of formation + Delta-G solvation = -48.433000 kcal Electronic energy + Delta-G solvation = -24910.538460 eV Core-core repulsion = 21415.233419 eV Total energy + Delta-G solvation = -3495.305041 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43831 -39.59828 -37.01469 -36.65829 -34.29290 -33.41427 -31.20293 -28.87000 -28.36472 -27.34834 -26.09251 -25.89955 -25.47682 -23.30200 -21.25893 -20.39730 -19.97248 -18.36263 -17.81193 -17.02108 -16.46932 -16.24124 -15.75639 -15.40411 -15.18994 -14.78005 -14.53177 -14.33714 -14.05863 -13.66697 -13.41169 -13.31467 -12.96602 -12.87399 -12.43894 -12.39442 -12.21318 -12.03562 -11.98233 -11.53782 -11.40742 -11.15626 -11.13653 -10.99154 -10.91624 -10.77255 -10.52864 -10.27540 -10.00964 -9.56510 -9.39244 -9.17839 -8.90385 -8.52966 -8.37362 -6.05264 -4.08127 2.33647 2.61700 3.27897 3.35575 3.38789 3.39998 4.01844 4.20069 4.28279 4.44278 4.51234 4.61006 4.68508 4.82860 4.97013 5.04380 5.20046 5.26817 5.31124 5.31260 5.37001 5.43683 5.47191 5.50472 5.59787 5.67214 5.67608 5.71318 5.78194 5.84525 5.87328 5.99909 6.02678 6.16528 6.19927 6.25413 6.67925 6.73949 6.95153 7.16748 7.22434 7.63904 7.77775 7.87063 7.97600 8.35202 8.98773 9.56218 11.06051 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.002980 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.057467 B = 9393.207848 C = 9917.808568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.112 3.888 5 N -0.599 5.599 6 C 0.116 3.884 7 C 0.061 3.939 8 C 0.038 3.962 9 N -0.472 5.472 10 C 0.031 3.969 11 C 0.028 3.972 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.020 4.020 21 O -0.356 6.356 22 C 0.050 3.950 23 C 0.490 3.510 24 O -0.545 6.545 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.017 0.983 41 H 0.025 0.975 42 H 0.260 0.740 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.127 0.873 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 16.760 3.276 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 C -0.202 4.202 4 C -0.010 4.010 5 N -0.331 5.331 6 C -0.006 4.006 7 C 0.021 3.979 8 C -0.091 4.091 9 N -0.196 5.196 10 C -0.097 4.097 11 C -0.009 4.009 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.150 4.150 21 O -0.273 6.273 22 C -0.030 4.030 23 C 0.278 3.722 24 O -0.424 6.424 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.145 0.855 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.564 17.359 3.203 21.103 hybrid contribution -0.097 -1.495 0.441 1.562 sum -11.661 15.864 3.644 20.023 Atomic orbital electron populations 1.21760 0.94535 1.01822 1.01318 1.21476 0.96885 0.96335 0.98400 1.21768 1.00956 0.95416 1.02065 1.21690 0.99973 0.80061 0.99290 1.47506 1.24567 1.09353 1.51712 1.21780 0.95821 0.86382 0.96668 1.23584 0.80644 0.94875 0.98846 1.23899 0.90619 0.97191 0.97403 1.68642 1.22483 1.25263 1.03174 1.22847 0.98941 0.86294 1.01584 1.19043 0.94472 0.95158 0.92213 1.21200 1.30496 1.01027 1.03482 0.92710 1.24992 0.96159 0.98158 0.94975 1.69974 1.36322 1.37713 1.09113 0.86535 0.78555 0.84368 0.78534 1.19770 1.20984 1.20951 1.24489 0.93960 1.00724 0.95779 1.88178 1.19375 1.64376 1.55392 1.22702 0.99569 0.86443 0.94255 1.20868 0.80766 0.92204 0.78407 1.90718 1.52597 1.52862 1.46173 0.92292 0.93352 0.93040 0.91064 0.92396 0.92510 0.92492 0.89250 0.90396 0.88077 0.90306 0.89446 0.88233 0.91556 0.95049 0.96480 0.95691 0.92987 0.89505 0.90426 0.85508 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.04 37.16 0.30 -1.09 16 2 C -0.11 -0.99 3.11 -90.62 -0.28 -1.27 16 3 C -0.14 -1.05 9.19 37.16 0.34 -0.70 16 4 C 0.11 1.08 4.89 -4.04 -0.02 1.06 16 5 N -0.60 -6.59 2.65 -174.68 -0.46 -7.05 16 6 C 0.12 1.26 5.79 -4.39 -0.03 1.24 16 7 C 0.06 0.77 1.21 -90.51 -0.11 0.66 16 8 C 0.04 0.56 6.52 -2.99 -0.02 0.54 16 9 N -0.47 -7.76 6.15 -240.94 -1.48 -9.24 16 10 C 0.03 0.61 4.75 -3.82 -0.02 0.59 16 11 C 0.03 0.71 5.04 -27.88 -0.14 0.57 16 12 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.02 -0.27 6.67 -2.98 -0.02 -0.29 16 21 O -0.36 -4.53 10.66 -35.23 -0.38 -4.90 16 22 C 0.05 0.54 6.67 35.75 0.24 0.78 16 23 C 0.49 6.02 6.36 -11.71 -0.07 5.95 16 24 O -0.54 -7.94 14.82 5.56 0.08 -7.85 16 25 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.61 6.45 -51.93 -0.33 0.28 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.96 7.11 -51.93 -0.37 0.60 16 33 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 34 H 0.10 1.08 7.91 -51.93 -0.41 0.67 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.39 7.78 -51.93 -0.40 0.99 16 37 H 0.10 1.42 8.09 -51.93 -0.42 1.00 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.03 0.61 7.70 -51.93 -0.40 0.21 16 40 H 0.02 0.44 7.54 -51.93 -0.39 0.05 16 41 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 44 H 0.08 1.04 7.79 -51.93 -0.40 0.63 16 45 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.09 0.86 7.92 -51.93 -0.41 0.45 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -30.79 363.03 -9.44 -40.23 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.15 Total: -2.20 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.24 Total: -5.17 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -1.21 Total: -41.84 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.29 Total: -12.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.79 -9.44 -40.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.204 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds