Wall clock time and date at job start Tue Mar 31 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47388 * 2 1 4 4 C 1.52998 * 109.47073 * 119.99836 * 2 1 3 5 5 N 1.46497 * 109.47106 * 65.50220 * 4 2 1 6 6 C 1.46268 * 118.71848 * 84.09582 * 5 4 2 7 7 C 1.52558 * 109.56999 * 163.92326 * 6 5 4 8 8 C 1.53382 * 113.83760 * 176.52513 * 7 6 5 9 9 N 1.48071 * 86.02399 * 91.25456 * 8 7 6 10 10 C 1.46900 * 110.99913 * 137.23117 * 9 8 7 11 11 C 1.53001 * 109.47132 * 70.54430 * 10 9 8 12 12 C 1.50702 * 109.47201 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99477 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00113 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99757 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00054 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46960 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46857 * 120.00278 * 16 14 12 19 19 H 1.48493 * 109.47142 * 240.00343 * 16 14 12 20 20 C 1.48060 * 90.84377 * 24.30407 * 9 8 7 21 21 O 1.42685 * 112.47422 * 45.21258 * 7 6 5 22 22 C 1.43051 * 112.94932 * 295.89926 * 21 7 6 23 23 C 1.33724 * 118.71576 * 264.09336 * 5 4 2 24 24 O 1.21280 * 118.37837 * 3.26044 * 23 5 4 25 25 H 1.09006 * 109.47075 * 300.00150 * 1 2 3 26 26 H 1.09004 * 109.47076 * 59.99659 * 1 2 3 27 27 H 1.08995 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47397 * 239.99626 * 2 1 3 29 29 H 1.09000 * 109.46489 * 304.98251 * 3 2 1 30 30 H 1.09003 * 109.46729 * 64.97638 * 3 2 1 31 31 H 1.08991 * 109.47013 * 184.98044 * 3 2 1 32 32 H 1.08998 * 109.47237 * 305.49902 * 4 2 1 33 33 H 1.09007 * 109.47218 * 185.49826 * 4 2 1 34 34 H 1.08996 * 109.46055 * 43.88860 * 6 5 4 35 35 H 1.09004 * 109.45680 * 283.94864 * 6 5 4 36 36 H 1.08998 * 113.78493 * 205.52844 * 8 7 6 37 37 H 1.08996 * 113.78624 * 336.97847 * 8 7 6 38 38 H 1.08996 * 109.46991 * 190.54891 * 10 9 8 39 39 H 1.09003 * 109.47187 * 310.54851 * 10 9 8 40 40 H 1.08996 * 109.47559 * 300.00114 * 11 10 9 41 41 H 1.09003 * 109.46741 * 60.00148 * 11 10 9 42 42 H 0.97001 * 119.99645 * 179.97438 * 15 14 12 43 43 H 1.08998 * 113.78350 * 221.42032 * 20 9 8 44 44 H 1.08996 * 113.78616 * 89.97279 * 20 9 8 45 45 H 1.09001 * 109.34645 * 167.53136 * 22 21 7 46 46 H 1.09004 * 109.34877 * 287.08623 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6628 -2.1353 1.1849 6 6 2.5178 -3.0575 0.4380 7 6 2.1798 -4.4942 0.8241 8 6 2.9638 -5.5493 0.0338 9 7 3.9607 -5.4776 1.1263 10 6 4.4276 -6.8189 1.5018 11 6 5.3013 -7.3870 0.3815 12 6 5.7808 -8.7627 0.7670 13 1 5.4909 -9.1893 1.7159 14 6 6.5885 -9.4771 -0.0922 15 7 6.9410 -8.9577 -1.2478 16 14 7.1823 -11.1826 0.3853 17 1 6.6488 -11.5352 1.7257 18 1 6.7027 -12.1713 -0.6136 19 1 8.6666 -11.1974 0.4233 20 6 2.9262 -4.9929 2.0681 21 8 0.7734 -4.7318 0.8637 22 6 0.1064 -3.9660 1.8711 23 6 0.5502 -2.5326 1.8114 24 8 -0.1345 -1.6939 2.3579 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6056 1.9814 -0.8420 30 1 1.7513 1.9300 0.9312 31 1 3.1263 1.4438 -0.0892 32 1 1.5985 -0.2674 2.1365 33 1 3.1256 -0.6367 1.2999 34 1 3.5627 -2.8548 0.6728 35 1 2.3530 -2.9206 -0.6308 36 1 2.4573 -6.5119 -0.0366 37 1 3.3370 -5.1922 -0.9260 38 1 5.0101 -6.7567 2.4209 39 1 3.5690 -7.4716 1.6593 40 1 4.7187 -7.4491 -0.5376 41 1 6.1599 -6.7342 0.2240 42 1 7.5096 -9.4601 -1.8521 43 1 3.2694 -4.1936 2.7248 44 1 2.4085 -5.7905 2.6010 45 1 -0.9704 -4.0177 1.7102 46 1 0.3429 -4.3767 2.8527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:10 Heat of formation + Delta-G solvation = -69.483565 kcal Electronic energy + Delta-G solvation = -24911.451281 eV Core-core repulsion = 21415.233419 eV Total energy + Delta-G solvation = -3496.217862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45971 -40.67557 -38.05214 -37.57668 -35.49385 -35.03736 -32.88963 -30.14015 -29.32278 -28.06933 -27.40139 -27.24282 -26.34231 -24.91771 -22.56999 -21.58097 -20.96871 -19.36286 -18.82906 -18.58029 -17.83365 -17.23208 -16.81441 -16.59241 -16.52314 -16.14336 -15.57603 -15.42981 -15.11513 -14.84990 -14.55737 -14.37634 -14.21447 -14.04253 -13.73774 -13.52350 -13.26097 -13.08900 -12.99990 -12.86076 -12.77014 -12.58016 -12.41893 -12.20832 -11.95490 -11.87025 -11.74782 -11.62389 -11.38145 -11.32890 -11.11028 -10.55976 -10.45987 -9.86957 -9.76531 -8.19881 -6.30647 1.40154 1.40841 1.41557 1.54089 1.73515 2.37249 2.41988 2.94268 3.14159 3.19487 3.22481 3.56975 3.85328 3.94761 3.96949 4.10910 4.16081 4.21546 4.33373 4.40761 4.47915 4.49097 4.54023 4.57766 4.60595 4.67767 4.70950 4.78571 4.82690 4.86870 4.96078 5.02352 5.03616 5.19471 5.26168 5.33257 5.39499 5.46273 5.47110 5.66581 5.78194 5.78829 6.02565 6.26307 6.27635 6.86274 6.94676 7.38601 8.92105 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.002980 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.057467 B = 9393.207848 C = 9917.808568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.110 3.890 5 N -0.596 5.596 6 C 0.121 3.879 7 C 0.076 3.924 8 C 0.031 3.969 9 N -0.481 5.481 10 C 0.048 3.952 11 C 0.037 3.963 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.963 3.037 17 H -0.263 1.263 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.014 4.014 21 O -0.365 6.365 22 C 0.049 3.951 23 C 0.486 3.514 24 O -0.572 6.572 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.033 0.967 40 H -0.003 1.003 41 H -0.005 1.005 42 H 0.264 0.736 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.142 0.858 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 16.976 3.940 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 C -0.198 4.198 4 C -0.012 4.012 5 N -0.328 5.328 6 C -0.002 4.002 7 C 0.035 3.965 8 C -0.098 4.098 9 N -0.205 5.205 10 C -0.080 4.080 11 C -0.001 4.001 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.788 3.212 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.143 4.143 21 O -0.283 6.283 22 C -0.030 4.030 23 C 0.275 3.725 24 O -0.453 6.453 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.100 0.900 45 H 0.160 0.840 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.685 17.586 3.870 21.466 hybrid contribution -0.097 -1.519 0.210 1.536 sum -11.782 16.067 4.080 20.338 Atomic orbital electron populations 1.21703 0.95607 1.00427 1.01194 1.21457 0.95850 0.97428 0.98014 1.21736 1.01603 0.94137 1.02314 1.21804 1.01001 0.79210 0.99147 1.47551 1.24109 1.09958 1.51135 1.21760 0.96028 0.85200 0.97174 1.23330 0.80683 0.95068 0.97385 1.23895 0.90762 0.97619 0.97523 1.68569 1.24252 1.22883 1.04802 1.22482 0.98107 0.88078 0.99343 1.18857 0.93875 0.94097 0.93238 1.21646 1.30623 1.02278 1.03696 0.92287 1.25913 0.96316 1.02429 0.94875 1.70096 1.37071 1.39508 1.10254 0.85431 0.78031 0.79163 0.78611 1.18680 1.20427 1.20428 1.24535 0.92878 1.01011 0.95901 1.88163 1.19173 1.64867 1.56136 1.22859 1.00197 0.85456 0.94466 1.21101 0.80789 0.92517 0.78143 1.90711 1.53446 1.53598 1.47496 0.93470 0.92367 0.95004 0.90859 0.91874 0.92527 0.91437 0.90447 0.88563 0.87372 0.89352 0.90729 0.87948 0.91593 0.94859 0.98508 0.98684 0.92760 0.88059 0.90047 0.84042 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.04 71.98 0.58 -2.00 16 2 C -0.11 -1.75 3.11 -10.79 -0.03 -1.78 16 3 C -0.14 -1.76 9.19 71.98 0.66 -1.10 16 4 C 0.11 1.95 4.89 86.38 0.42 2.37 16 5 N -0.60 -12.14 2.65 -825.53 -2.19 -14.33 16 6 C 0.12 2.40 5.79 86.28 0.50 2.90 16 7 C 0.08 1.79 1.21 -10.65 -0.01 1.78 16 8 C 0.03 0.91 6.52 86.20 0.56 1.47 16 9 N -0.48 -15.49 6.15 -920.47 -5.66 -21.15 16 10 C 0.05 1.90 4.75 86.30 0.41 2.31 16 11 C 0.04 1.88 5.04 29.85 0.15 2.03 16 12 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 13 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 16 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 C -0.01 -0.36 6.67 86.21 0.58 0.22 16 21 O -0.37 -8.73 10.66 -148.98 -1.59 -10.32 16 22 C 0.05 0.98 6.67 71.07 0.47 1.46 16 23 C 0.49 11.33 6.36 87.65 0.56 11.89 16 24 O -0.57 -16.26 14.82 -3.03 -0.04 -16.31 16 25 H 0.05 1.02 8.06 -2.38 -0.02 1.00 16 26 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.03 0.73 6.45 -2.39 -0.02 0.72 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.59 7.11 -2.39 -0.02 1.58 16 33 H 0.10 1.35 8.03 -2.38 -0.02 1.33 16 34 H 0.11 2.05 7.91 -2.39 -0.02 2.03 16 35 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.07 2.39 7.78 -2.39 -0.02 2.38 16 37 H 0.10 2.91 8.09 -2.39 -0.02 2.89 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.03 1.29 7.70 -2.39 -0.02 1.27 16 40 H 0.00 -0.19 7.54 -2.39 -0.02 -0.21 16 41 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.10 2.27 8.09 -2.39 -0.02 2.25 16 44 H 0.08 2.01 7.79 -2.39 -0.02 2.00 16 45 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.10 1.78 7.92 -2.38 -0.02 1.76 16 Total: -1.00 -66.11 363.03 -0.70 -66.81 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.93 Total: 12.83 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.54 Total: -7.86 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -7.57 Total: -90.70 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.63 Total: -26.63 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -66.11 -0.70 -66.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.669 kcal (2) G-P(sol) polarization free energy of solvation -66.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds