Wall clock time and date at job start Tue Mar 31 2020 04:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30179 * 1 3 3 Si 1.86798 * 119.99641 * 2 1 4 4 H 1.48499 * 109.47390 * 274.97926 * 3 2 1 5 5 H 1.48497 * 109.47615 * 34.98102 * 3 2 1 6 6 H 1.48502 * 109.47087 * 154.98201 * 3 2 1 7 7 C 1.40951 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00331 * 186.10316 * 7 2 1 9 9 C 1.47033 * 120.00218 * 6.11368 * 7 2 1 10 10 O 1.21745 * 119.99631 * 353.96736 * 9 7 2 11 11 N 1.34774 * 120.00259 * 173.97709 * 9 7 2 12 12 N 1.40099 * 119.99986 * 179.97438 * 11 9 7 13 13 C 1.31267 * 120.00023 * 179.97438 * 12 11 9 14 14 C 1.46483 * 120.00020 * 180.27733 * 13 12 11 15 15 C 1.40403 * 120.21924 * 179.45032 * 14 13 12 16 16 C 1.37638 * 119.79357 * 179.79037 * 15 14 13 17 17 N 1.48014 * 119.86734 * 180.20553 * 16 15 14 18 18 O 1.31707 * 119.99614 * 180.25351 * 17 16 15 19 19 O 1.31698 * 120.00545 * 0.25795 * 17 16 15 20 20 C 1.38682 * 120.25503 * 0.46438 * 16 15 14 21 21 C 1.38468 * 120.45291 * 359.78356 * 20 16 15 22 22 C 1.37922 * 120.19667 * 359.97438 * 21 20 16 23 23 Cl 1.73604 * 120.12854 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00258 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99874 * 359.97438 * 11 9 7 26 26 H 1.08004 * 119.99663 * 0.02562 * 13 12 11 27 27 H 1.07999 * 120.10019 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.77379 * 179.77065 * 20 16 15 29 29 H 1.08007 * 119.89848 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3018 0.0000 0.0000 3 14 2.2357 1.6178 0.0000 4 1 2.3779 2.1073 -1.3948 5 1 1.4898 2.6200 0.8026 6 1 3.5819 1.4122 0.5921 7 6 2.0066 -1.2207 0.0005 8 1 3.0819 -1.2233 0.1000 9 6 1.2777 -2.4905 -0.1345 10 8 0.0603 -2.4963 -0.1363 11 7 1.9573 -3.6480 -0.2561 12 7 1.2628 -4.8579 -0.3842 13 6 1.9248 -5.9852 -0.5032 14 6 1.1986 -7.2497 -0.6432 15 6 1.9020 -8.4568 -0.7823 16 6 1.2108 -9.6403 -0.9090 17 7 1.9507 -10.9144 -1.0511 18 8 1.2919 -12.0478 -1.1775 19 8 3.2677 -10.9147 -1.0512 20 6 -0.1760 -9.6431 -0.9093 21 6 -0.8802 -8.4580 -0.7780 22 6 -0.2065 -7.2619 -0.6449 23 17 -1.0911 -5.7772 -0.4810 24 1 -0.4850 0.8400 -0.0004 25 1 2.9274 -3.6433 -0.2549 26 1 3.0048 -5.9800 -0.5018 27 1 2.9819 -8.4570 -0.7869 28 1 -0.7104 -10.5758 -1.0129 29 1 -1.9601 -8.4705 -0.7798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000566131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:51 Heat of formation + Delta-G solvation = 56.777589 kcal Electronic energy + Delta-G solvation = -19946.411767 eV Core-core repulsion = 16287.619875 eV Total energy + Delta-G solvation = -3658.791892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 297.035 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38659 -38.58675 -37.68146 -36.40396 -35.44458 -34.61205 -32.95043 -32.43246 -31.85523 -29.83705 -26.78471 -26.49041 -24.17021 -22.90602 -21.15562 -20.06096 -18.65638 -18.29901 -17.47617 -17.03371 -16.69148 -16.18136 -15.65629 -15.12010 -15.00548 -14.34733 -14.14232 -13.84561 -13.28771 -12.95651 -12.82064 -12.18417 -11.73074 -11.57884 -11.54874 -11.53892 -11.32761 -11.21902 -11.14431 -10.86716 -10.81043 -10.48116 -9.73484 -9.40868 -9.38652 -9.10842 -7.99801 -7.69780 -6.53699 -4.97914 -0.92558 0.32262 0.78344 0.88286 2.05833 2.24393 2.97498 3.02593 3.08038 3.16378 3.30626 3.93190 4.04956 4.20523 4.31043 4.33471 4.47115 4.82189 5.06759 5.22467 5.30107 5.40254 5.46960 5.51860 5.78545 5.97011 6.24619 6.55659 7.12305 7.38892 7.90725 8.25011 8.66320 8.96642 10.23705 10.39941 Molecular weight = 297.03amu Principal moments of inertia in cm(-1) A = 0.034614 B = 0.003168 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.719872 B = 8836.501017 C = 9630.734977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.088 3.912 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.552 3.448 10 O -0.537 6.537 11 N -0.576 5.576 12 N -0.146 5.146 13 C -0.017 4.017 14 C 0.000 4.000 15 C -0.034 4.034 16 C -0.005 4.005 17 N -0.014 5.014 18 O -0.174 6.174 19 O -0.171 6.171 20 C -0.050 4.050 21 C -0.111 4.111 22 C 0.012 3.988 23 Cl 0.032 6.968 24 H 0.276 0.724 25 H 0.373 0.627 26 H 0.123 0.877 27 H 0.165 0.835 28 H 0.160 0.840 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -13.467 -1.467 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.094 0.906 9 C 0.358 3.642 10 O -0.413 6.413 11 N -0.321 5.321 12 N 0.041 4.959 13 C -0.223 4.223 14 C -0.004 4.004 15 C -0.056 4.056 16 C -0.092 4.092 17 N 0.465 4.535 18 O -0.367 6.367 19 O -0.365 6.365 20 C -0.071 4.071 21 C -0.130 4.130 22 C -0.018 4.018 23 Cl 0.062 6.938 24 H 0.087 0.913 25 H 0.209 0.791 26 H 0.140 0.860 27 H 0.182 0.818 28 H 0.178 0.822 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.085 -11.988 -1.311 12.108 hybrid contribution 2.030 0.189 -0.076 2.041 sum 0.945 -11.799 -1.387 11.918 Atomic orbital electron populations 1.69755 1.07482 1.28334 1.32583 1.25833 0.94685 1.00524 0.92396 0.86197 0.80207 0.80559 0.78989 1.19489 1.20120 1.18596 1.21071 0.94201 0.87985 1.54189 0.90621 1.18768 0.87702 0.80206 0.77506 1.90649 1.13514 1.84571 1.52584 1.48387 1.08073 1.02540 1.73142 1.75704 1.26609 0.92920 1.00670 1.23729 0.97243 0.90089 1.11244 1.18281 0.90411 0.91750 0.99925 1.21090 1.02122 0.88294 0.94130 1.20120 0.91784 0.81918 1.15362 1.50427 1.03181 1.03959 0.95943 1.96271 1.68683 1.16784 1.54998 1.96285 0.88715 1.95702 1.55794 1.21131 0.90632 1.00425 0.94888 1.21083 1.01564 0.89167 1.01176 1.22076 0.92645 0.91215 0.95883 1.98580 1.73459 1.28082 1.93691 0.91331 0.79061 0.85961 0.81774 0.82213 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.00 11.87 55.60 0.66 -20.34 15 2 C 0.09 2.27 5.51 -17.23 -0.09 2.18 15 3 Si 0.92 18.54 29.57 -169.99 -5.03 13.51 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 7 C -0.54 -13.91 9.61 -34.99 -0.34 -14.25 15 8 H 0.08 1.76 7.87 -52.49 -0.41 1.34 15 9 C 0.55 14.69 7.89 -12.70 -0.10 14.59 15 10 O -0.54 -16.28 15.43 5.15 0.08 -16.20 15 11 N -0.58 -12.21 6.27 30.36 0.19 -12.02 15 12 N -0.15 -2.81 7.67 32.16 0.25 -2.56 15 13 C -0.02 -0.25 10.77 -14.47 -0.16 -0.41 15 14 C 0.00 0.00 5.89 -104.90 -0.62 -0.61 15 15 C -0.03 -0.36 9.34 -38.99 -0.36 -0.73 15 16 C -0.01 -0.06 6.88 -80.00 -0.55 -0.61 15 17 N -0.01 -0.19 4.98 33.93 0.17 -0.02 15 18 O -0.17 -2.37 19.14 -31.57 -0.60 -2.97 15 19 O -0.17 -2.38 19.13 -31.57 -0.60 -2.99 15 20 C -0.05 -0.46 9.58 -39.33 -0.38 -0.84 15 21 C -0.11 -1.05 9.81 -39.61 -0.39 -1.44 15 22 C 0.01 0.16 6.37 -38.84 -0.25 -0.09 15 23 Cl 0.03 0.52 25.74 -51.86 -1.33 -0.81 15 24 H 0.28 6.91 8.28 -40.82 -0.34 6.57 15 25 H 0.37 6.55 8.65 -182.60 -1.58 4.97 15 26 H 0.12 1.39 8.04 -52.48 -0.42 0.97 15 27 H 0.16 1.46 7.56 -52.49 -0.40 1.07 15 28 H 0.16 1.15 7.56 -52.49 -0.40 0.75 15 29 H 0.16 1.10 8.06 -52.48 -0.42 0.67 15 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -32.80 298.79 -7.72 -40.52 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -2.76 Total: 1.59 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.23 Total: -2.20 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 1.27 Total: -34.94 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.13 Total: -22.16 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -1.33 Total: -0.81 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.80 -7.72 -40.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000566131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.295 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds