Wall clock time and date at job start Tue Mar 31 2020 04:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30179 * 1 3 3 Si 1.86798 * 119.99641 * 2 1 4 4 H 1.48499 * 109.47390 * 274.97926 * 3 2 1 5 5 H 1.48497 * 109.47615 * 34.98102 * 3 2 1 6 6 H 1.48502 * 109.47087 * 154.98201 * 3 2 1 7 7 C 1.40951 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00331 * 186.10316 * 7 2 1 9 9 C 1.47033 * 120.00218 * 6.11368 * 7 2 1 10 10 O 1.21745 * 119.99631 * 353.96736 * 9 7 2 11 11 N 1.34774 * 120.00259 * 173.97709 * 9 7 2 12 12 N 1.40099 * 119.99986 * 179.97438 * 11 9 7 13 13 C 1.31267 * 120.00023 * 179.97438 * 12 11 9 14 14 C 1.46483 * 120.00020 * 180.27733 * 13 12 11 15 15 C 1.40403 * 120.21924 * 179.45032 * 14 13 12 16 16 C 1.37638 * 119.79357 * 179.79037 * 15 14 13 17 17 N 1.48014 * 119.86734 * 180.20553 * 16 15 14 18 18 O 1.31707 * 119.99614 * 180.25351 * 17 16 15 19 19 O 1.31698 * 120.00545 * 0.25795 * 17 16 15 20 20 C 1.38682 * 120.25503 * 0.46438 * 16 15 14 21 21 C 1.38468 * 120.45291 * 359.78356 * 20 16 15 22 22 C 1.37922 * 120.19667 * 359.97438 * 21 20 16 23 23 Cl 1.73604 * 120.12854 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00258 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99874 * 359.97438 * 11 9 7 26 26 H 1.08004 * 119.99663 * 0.02562 * 13 12 11 27 27 H 1.07999 * 120.10019 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.77379 * 179.77065 * 20 16 15 29 29 H 1.08007 * 119.89848 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3018 0.0000 0.0000 3 14 2.2357 1.6178 0.0000 4 1 2.3779 2.1073 -1.3948 5 1 1.4898 2.6200 0.8026 6 1 3.5819 1.4122 0.5921 7 6 2.0066 -1.2207 0.0005 8 1 3.0819 -1.2233 0.1000 9 6 1.2777 -2.4905 -0.1345 10 8 0.0603 -2.4963 -0.1363 11 7 1.9573 -3.6480 -0.2561 12 7 1.2628 -4.8579 -0.3842 13 6 1.9248 -5.9852 -0.5032 14 6 1.1986 -7.2497 -0.6432 15 6 1.9020 -8.4568 -0.7823 16 6 1.2108 -9.6403 -0.9090 17 7 1.9507 -10.9144 -1.0511 18 8 1.2919 -12.0478 -1.1775 19 8 3.2677 -10.9147 -1.0512 20 6 -0.1760 -9.6431 -0.9093 21 6 -0.8802 -8.4580 -0.7780 22 6 -0.2065 -7.2619 -0.6449 23 17 -1.0911 -5.7772 -0.4810 24 1 -0.4850 0.8400 -0.0004 25 1 2.9274 -3.6433 -0.2549 26 1 3.0048 -5.9800 -0.5018 27 1 2.9819 -8.4570 -0.7869 28 1 -0.7104 -10.5758 -1.0129 29 1 -1.9601 -8.4705 -0.7798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000566131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:50 Heat of formation + Delta-G solvation = 34.730668 kcal Electronic energy + Delta-G solvation = -19947.367793 eV Core-core repulsion = 16287.619875 eV Total energy + Delta-G solvation = -3659.747918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 297.035 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35341 -39.69156 -39.31598 -37.53371 -36.97838 -35.64447 -34.77896 -33.82235 -32.79676 -31.22975 -28.34091 -27.73403 -25.36819 -23.84270 -22.49138 -21.60469 -19.93796 -19.31164 -18.94387 -18.07880 -17.89354 -17.52551 -17.16175 -16.26559 -16.10520 -15.73548 -15.36585 -14.93069 -14.79304 -14.65741 -13.92860 -13.29574 -13.15911 -13.08562 -12.80678 -12.75410 -12.69919 -12.60494 -12.39834 -12.36014 -12.04067 -11.92153 -11.04570 -10.79606 -10.63080 -10.43937 -9.98834 -9.20296 -8.42062 -6.96214 -1.94846 -0.65131 -0.16618 -0.09577 0.99229 1.13021 1.39710 1.42547 1.56697 1.90552 2.13062 2.29803 2.48255 3.17476 3.20508 3.36766 3.54706 3.54936 3.87199 4.10419 4.30637 4.36450 4.50297 4.59695 4.77893 4.97398 5.10577 5.23895 5.50451 5.60017 6.05497 6.73667 6.75809 7.31919 8.39141 8.54993 Molecular weight = 297.03amu Principal moments of inertia in cm(-1) A = 0.034614 B = 0.003168 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.719872 B = 8836.501017 C = 9630.734977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.034 3.966 3 Si 1.002 2.998 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.566 4.566 8 H 0.096 0.904 9 C 0.545 3.455 10 O -0.590 6.590 11 N -0.586 5.586 12 N -0.210 5.210 13 C 0.032 3.968 14 C -0.027 4.027 15 C -0.008 4.008 16 C -0.016 4.016 17 N -0.012 5.012 18 O -0.177 6.177 19 O -0.193 6.193 20 C -0.021 4.021 21 C -0.100 4.100 22 C 0.010 3.990 23 Cl -0.008 7.008 24 H 0.280 0.720 25 H 0.387 0.613 26 H 0.158 0.842 27 H 0.185 0.815 28 H 0.189 0.811 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 -15.220 -1.734 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.184 4.184 3 Si 0.821 3.179 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.603 4.603 8 H 0.114 0.886 9 C 0.351 3.649 10 O -0.472 6.472 11 N -0.332 5.332 12 N -0.019 5.019 13 C -0.177 4.177 14 C -0.031 4.031 15 C -0.030 4.030 16 C -0.103 4.103 17 N 0.465 4.535 18 O -0.372 6.372 19 O -0.383 6.383 20 C -0.042 4.042 21 C -0.119 4.119 22 C -0.020 4.020 23 Cl 0.022 6.978 24 H 0.090 0.910 25 H 0.225 0.775 26 H 0.175 0.825 27 H 0.203 0.797 28 H 0.206 0.794 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.301 -13.791 -1.580 13.884 hybrid contribution 1.612 0.233 -0.037 1.629 sum 1.912 -13.558 -1.616 13.787 Atomic orbital electron populations 1.69920 1.09828 1.29695 1.34428 1.27078 0.95476 1.04808 0.91022 0.84933 0.78996 0.74738 0.79247 1.18772 1.19725 1.16898 1.21620 0.95347 0.88658 1.54645 0.88585 1.18975 0.87278 0.81936 0.76737 1.90591 1.15569 1.86051 1.54957 1.47531 1.08293 1.02622 1.74721 1.75819 1.27154 0.93093 1.05805 1.24423 0.99234 0.89533 1.04463 1.18235 0.90435 0.91584 1.02847 1.21178 1.03055 0.87229 0.91517 1.20303 0.92450 0.81323 1.16190 1.50597 1.03145 1.04307 0.95442 1.96271 1.68537 1.17346 1.55007 1.96295 0.89151 1.95819 1.57015 1.21491 0.89928 1.01263 0.91504 1.21350 1.02999 0.87746 0.99836 1.22303 0.92816 0.90708 0.96199 1.98586 1.74329 1.30792 1.94088 0.90978 0.77460 0.82544 0.79745 0.79361 0.79490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.09 11.87 21.99 0.26 -46.83 15 2 C 0.03 1.76 5.51 85.60 0.47 2.23 15 3 Si 1.00 38.27 29.57 68.60 2.03 40.30 15 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 15 6 H -0.25 -8.64 7.11 99.48 0.71 -7.93 15 7 C -0.57 -30.05 9.61 25.24 0.24 -29.81 15 8 H 0.10 4.48 7.87 -2.91 -0.02 4.45 15 9 C 0.54 30.25 7.89 86.55 0.68 30.94 15 10 O -0.59 -37.86 15.43 -4.49 -0.07 -37.93 15 11 N -0.59 -25.52 6.27 -176.07 -1.10 -26.62 15 12 N -0.21 -8.17 7.67 -52.16 -0.40 -8.57 15 13 C 0.03 0.86 10.77 86.93 0.94 1.80 15 14 C -0.03 -0.62 5.89 -20.05 -0.12 -0.74 15 15 C -0.01 -0.14 9.34 22.66 0.21 0.07 15 16 C -0.02 -0.30 6.88 36.34 0.25 -0.05 15 17 N -0.01 -0.27 4.98 -46.55 -0.23 -0.50 15 18 O -0.18 -4.27 19.14 3.50 0.07 -4.20 15 19 O -0.19 -4.91 19.13 3.52 0.07 -4.84 15 20 C -0.02 -0.30 9.58 22.43 0.21 -0.09 15 21 C -0.10 -1.57 9.81 22.25 0.22 -1.35 15 22 C 0.01 0.24 6.37 22.75 0.14 0.39 15 23 Cl -0.01 -0.27 25.74 -2.72 -0.07 -0.34 15 24 H 0.28 14.66 8.28 -92.71 -0.77 13.89 15 25 H 0.39 13.70 8.65 -213.32 -1.85 11.85 15 26 H 0.16 3.07 8.04 -2.91 -0.02 3.05 15 27 H 0.19 2.55 7.56 -2.91 -0.02 2.53 15 28 H 0.19 1.72 7.56 -2.91 -0.02 1.70 15 29 H 0.19 1.89 8.06 -2.91 -0.02 1.87 15 Total: -1.00 -76.28 298.79 3.20 -73.08 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.61 Total: 13.05 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 3.25 Total: 3.41 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -1.47 Total: -82.52 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: 0.07 Total: -46.98 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.07 Total: -0.34 kcal Total: -76.28 3.20 -73.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000566131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.812 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds