Wall clock time and date at job start Tue Mar 31 2020 04:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 120.00481 * 2 1 4 4 H 1.48496 * 109.47559 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47372 * 300.00018 * 3 2 1 6 6 H 1.48505 * 109.47216 * 60.00049 * 3 2 1 7 7 C 1.37878 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99935 * 0.02562 * 7 2 1 10 10 O 1.45203 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34230 * 117.00157 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99735 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00039 * 179.97438 * 11 10 9 14 14 S 1.81399 * 109.47038 * 180.02562 * 13 11 10 15 15 C 1.76196 * 102.99751 * 179.97438 * 14 13 11 16 16 C 1.38991 * 120.08264 * 0.02562 * 15 14 13 17 17 C 1.38065 * 119.91907 * 179.97438 * 16 15 14 18 18 C 1.38324 * 120.08029 * 359.97438 * 17 16 15 19 19 C 1.38271 * 120.16157 * 0.02562 * 18 17 16 20 20 C 1.38108 * 120.08151 * 359.97438 * 19 18 17 21 21 N 1.48011 * 120.04202 * 180.02562 * 20 19 18 22 22 O 1.21800 * 119.99500 * 359.97438 * 21 20 19 23 23 O 1.21792 * 119.99623 * 179.97438 * 21 20 19 24 24 H 0.97002 * 119.99240 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47238 * 60.00400 * 9 7 2 26 26 H 1.09003 * 109.46874 * 299.99540 * 9 7 2 27 27 H 1.09002 * 109.46563 * 60.00380 * 13 11 10 28 28 H 1.08999 * 109.47029 * 300.00380 * 13 11 10 29 29 H 1.08001 * 120.04165 * 359.95506 * 16 15 14 30 30 H 1.08005 * 119.95297 * 179.71901 * 17 16 15 31 31 H 1.07996 * 119.91724 * 180.02562 * 18 17 16 32 32 H 1.08005 * 119.96251 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1944 -3.6029 -0.0015 11 6 1.6813 -4.8433 -0.0019 12 8 0.4835 -5.0015 -0.0029 13 6 2.5993 -6.0384 -0.0023 14 16 1.6113 -7.5597 -0.0035 15 6 2.8352 -8.8272 -0.0046 16 6 4.1843 -8.4929 -0.0038 17 6 5.1405 -9.4888 -0.0041 18 6 4.7573 -10.8179 -0.0047 19 6 3.4161 -11.1542 -0.0055 20 6 2.4540 -10.1634 -0.0052 21 7 1.0186 -10.5244 -0.0055 22 8 0.6853 -11.6960 -0.0065 23 8 0.1708 -9.6500 -0.0048 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 3.2280 -6.0138 0.8878 28 1 3.2282 -6.0133 -0.8922 29 1 4.4843 -7.4554 -0.0032 30 1 6.1890 -9.2297 -0.0080 31 1 5.5075 -11.5948 -0.0045 32 1 3.1205 -12.1930 -0.0055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001795136.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:24 Heat of formation + Delta-G solvation = -57.865087 kcal Electronic energy + Delta-G solvation = -20226.626167 eV Core-core repulsion = 16668.447046 eV Total energy + Delta-G solvation = -3558.179122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 297.055 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27749 -39.65075 -39.58876 -36.66695 -35.80253 -32.98799 -32.43984 -32.14741 -30.37957 -27.68457 -26.77112 -23.67843 -23.29024 -22.66720 -20.60226 -19.67184 -18.73916 -17.88090 -17.64682 -17.17036 -16.71265 -16.05993 -15.99916 -15.78269 -15.48044 -14.84206 -14.37375 -14.09065 -14.03544 -13.48984 -12.83222 -12.73981 -12.20323 -12.08091 -11.75855 -11.70316 -11.44598 -11.23665 -11.12202 -11.05479 -10.51381 -10.39207 -10.07557 -10.03839 -9.96702 -9.84165 -9.42552 -8.60566 -7.90227 -6.29414 -4.35808 -0.42741 0.40553 0.79089 1.11743 1.26060 1.92776 2.64138 2.80811 3.18804 3.23138 3.28178 3.39937 3.89401 4.16924 4.24878 4.43095 4.51957 4.56148 4.76928 4.95038 5.03730 5.06936 5.16867 5.39119 5.43902 5.61839 5.86098 6.25519 6.71171 7.11321 7.31910 7.53259 7.69783 7.89703 8.36758 8.74334 9.29160 10.81184 Molecular weight = 297.05amu Principal moments of inertia in cm(-1) A = 0.031552 B = 0.002934 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.203342 B = 9539.401314 C =10406.157728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.205 3.795 10 O -0.352 6.352 11 C 0.471 3.529 12 O -0.500 6.500 13 C -0.179 4.179 14 S 0.108 5.892 15 C -0.059 4.059 16 C -0.143 4.143 17 C -0.043 4.043 18 C -0.135 4.135 19 C -0.033 4.033 20 C -0.042 4.042 21 N 0.031 4.969 22 O -0.171 6.171 23 O -0.140 6.140 24 H 0.268 0.732 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.695 -21.299 -0.009 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.091 0.909 9 C 0.134 3.866 10 O -0.267 6.267 11 C 0.312 3.688 12 O -0.389 6.389 13 C -0.327 4.327 14 S 0.359 5.641 15 C -0.175 4.175 16 C -0.168 4.168 17 C -0.064 4.064 18 C -0.158 4.158 19 C -0.053 4.053 20 C -0.135 4.135 21 N 0.543 4.457 22 O -0.382 6.382 23 O -0.353 6.353 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.499 -20.875 -0.010 23.832 hybrid contribution 1.350 0.939 0.000 1.644 sum 12.849 -19.936 -0.011 23.718 Atomic orbital electron populations 1.69990 1.06153 1.27689 1.48785 1.24973 0.95075 0.99590 0.94613 0.86161 0.79799 0.81942 0.77877 1.19367 1.20589 1.20583 1.21011 0.94280 0.88545 1.53148 0.90950 1.21066 0.87472 0.79648 0.98410 1.86431 1.44358 1.14357 1.81598 1.21994 0.87293 0.85256 0.74295 1.90699 1.16284 1.86692 1.45214 1.23973 1.03525 0.96248 1.08958 1.88068 1.00427 0.90344 1.85308 1.22361 1.00006 0.96701 0.98466 1.21330 0.89779 1.01522 1.04198 1.21543 1.00470 0.92473 0.91890 1.21188 0.94718 0.97145 1.02736 1.20996 0.91840 0.99537 0.92925 1.20496 0.81088 0.93567 1.18347 1.43575 1.03092 1.00759 0.98228 1.94511 1.86304 1.03108 1.54300 1.94518 1.45088 1.42601 1.53105 0.92187 0.94959 0.94964 0.85502 0.85505 0.83381 0.83710 0.83523 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.92 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.88 9.44 -34.44 -0.33 -15.20 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.20 5.53 5.22 36.01 0.19 5.72 16 10 O -0.35 -7.96 10.20 -39.26 -0.40 -8.36 16 11 C 0.47 9.21 7.98 36.01 0.29 9.50 16 12 O -0.50 -11.42 15.61 -18.75 -0.29 -11.71 16 13 C -0.18 -2.33 4.93 36.01 0.18 -2.15 16 14 S 0.11 1.52 17.88 -107.50 -1.92 -0.40 16 15 C -0.06 -0.64 6.11 -39.04 -0.24 -0.88 16 16 C -0.14 -1.10 9.36 -39.37 -0.37 -1.47 16 17 C -0.04 -0.23 10.04 -39.61 -0.40 -0.63 16 18 C -0.14 -0.71 10.04 -39.54 -0.40 -1.11 16 19 C -0.03 -0.26 9.55 -39.62 -0.38 -0.63 16 20 C -0.04 -0.48 6.87 -79.73 -0.55 -1.03 16 21 N 0.03 0.43 4.45 34.07 0.15 0.58 16 22 O -0.17 -2.40 18.45 -29.46 -0.54 -2.94 16 23 O -0.14 -2.26 15.81 -29.46 -0.47 -2.73 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.93 8.13 -51.93 -0.42 0.50 16 26 H 0.03 0.92 8.13 -51.93 -0.42 0.50 16 27 H 0.13 1.30 7.75 -51.92 -0.40 0.90 16 28 H 0.13 1.30 7.75 -51.92 -0.40 0.90 16 29 H 0.15 0.90 5.88 -52.49 -0.31 0.59 16 30 H 0.15 0.34 8.06 -52.48 -0.42 -0.09 16 31 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 32 H 0.16 0.96 7.61 -52.48 -0.40 0.56 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -33.73 309.06 -7.95 -41.67 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: -2.75 Total: -5.03 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.10 Total: -6.30 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.89 Total: -24.67 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -1.70 Total: -25.74 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.92 Total: -0.40 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.73 -7.95 -41.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001795136.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.192 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds