Wall clock time and date at job start Tue Mar 31 2020 04:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 120.00481 * 2 1 4 4 H 1.48496 * 109.47559 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47372 * 300.00018 * 3 2 1 6 6 H 1.48505 * 109.47216 * 60.00049 * 3 2 1 7 7 C 1.37878 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99935 * 0.02562 * 7 2 1 10 10 O 1.45203 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34230 * 117.00157 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99735 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00039 * 179.97438 * 11 10 9 14 14 S 1.81399 * 109.47038 * 180.02562 * 13 11 10 15 15 C 1.76196 * 102.99751 * 179.97438 * 14 13 11 16 16 C 1.38991 * 120.08264 * 0.02562 * 15 14 13 17 17 C 1.38065 * 119.91907 * 179.97438 * 16 15 14 18 18 C 1.38324 * 120.08029 * 359.97438 * 17 16 15 19 19 C 1.38271 * 120.16157 * 0.02562 * 18 17 16 20 20 C 1.38108 * 120.08151 * 359.97438 * 19 18 17 21 21 N 1.48011 * 120.04202 * 180.02562 * 20 19 18 22 22 O 1.21800 * 119.99500 * 359.97438 * 21 20 19 23 23 O 1.21792 * 119.99623 * 179.97438 * 21 20 19 24 24 H 0.97002 * 119.99240 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47238 * 60.00400 * 9 7 2 26 26 H 1.09003 * 109.46874 * 299.99540 * 9 7 2 27 27 H 1.09002 * 109.46563 * 60.00380 * 13 11 10 28 28 H 1.08999 * 109.47029 * 300.00380 * 13 11 10 29 29 H 1.08001 * 120.04165 * 359.95506 * 16 15 14 30 30 H 1.08005 * 119.95297 * 179.71901 * 17 16 15 31 31 H 1.07996 * 119.91724 * 180.02562 * 18 17 16 32 32 H 1.08005 * 119.96251 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1944 -3.6029 -0.0015 11 6 1.6813 -4.8433 -0.0019 12 8 0.4835 -5.0015 -0.0029 13 6 2.5993 -6.0384 -0.0023 14 16 1.6113 -7.5597 -0.0035 15 6 2.8352 -8.8272 -0.0046 16 6 4.1843 -8.4929 -0.0038 17 6 5.1405 -9.4888 -0.0041 18 6 4.7573 -10.8179 -0.0047 19 6 3.4161 -11.1542 -0.0055 20 6 2.4540 -10.1634 -0.0052 21 7 1.0186 -10.5244 -0.0055 22 8 0.6853 -11.6960 -0.0065 23 8 0.1708 -9.6500 -0.0048 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 3.2280 -6.0138 0.8878 28 1 3.2282 -6.0133 -0.8922 29 1 4.4843 -7.4554 -0.0032 30 1 6.1890 -9.2297 -0.0080 31 1 5.5075 -11.5948 -0.0045 32 1 3.1205 -12.1930 -0.0055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001795136.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:23 Heat of formation + Delta-G solvation = -78.285232 kcal Electronic energy + Delta-G solvation = -20227.511651 eV Core-core repulsion = 16668.447046 eV Total energy + Delta-G solvation = -3559.064606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 297.055 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.25661 -41.37929 -40.22885 -37.73159 -37.61202 -35.09782 -33.16478 -32.82727 -31.61415 -29.69778 -27.65245 -25.20827 -24.27130 -23.64727 -22.17505 -20.61818 -19.74893 -19.09735 -18.64212 -18.61964 -18.45814 -17.68546 -17.28076 -16.74137 -16.37764 -16.24023 -15.49019 -15.28606 -14.90843 -14.51501 -14.45867 -13.76744 -13.73554 -13.35865 -13.09863 -12.96387 -12.84882 -12.53426 -12.45516 -12.35549 -12.21876 -11.81958 -11.71837 -11.48157 -11.15416 -11.00761 -10.73759 -10.64601 -8.86853 -8.41619 -6.59094 -1.29835 -0.19026 -0.16647 0.27473 0.38843 1.02241 1.06378 1.40376 1.43010 1.57107 1.83820 2.25205 2.35669 2.93310 3.23832 3.64088 3.65990 3.80764 3.90765 3.97797 4.00491 4.11747 4.49838 4.62472 4.64480 4.85484 4.96491 5.11437 5.17195 5.32192 5.51413 5.63919 5.84522 6.43487 6.48511 6.71029 7.13314 8.71068 Molecular weight = 297.05amu Principal moments of inertia in cm(-1) A = 0.031552 B = 0.002934 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.203342 B = 9539.401314 C =10406.157728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.997 3.003 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.218 3.782 10 O -0.352 6.352 11 C 0.465 3.535 12 O -0.540 6.540 13 C -0.152 4.152 14 S 0.026 5.974 15 C -0.066 4.066 16 C -0.142 4.142 17 C -0.024 4.024 18 C -0.113 4.113 19 C -0.037 4.037 20 C -0.065 4.065 21 N 0.031 4.969 22 O -0.164 6.164 23 O -0.206 6.206 24 H 0.274 0.726 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.168 0.832 30 H 0.190 0.810 31 H 0.191 0.809 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.748 -22.155 -0.010 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.100 0.900 9 C 0.146 3.854 10 O -0.268 6.268 11 C 0.308 3.692 12 O -0.430 6.430 13 C -0.299 4.299 14 S 0.274 5.726 15 C -0.182 4.182 16 C -0.167 4.167 17 C -0.044 4.044 18 C -0.135 4.135 19 C -0.057 4.057 20 C -0.158 4.158 21 N 0.537 4.463 22 O -0.381 6.381 23 O -0.405 6.405 24 H 0.083 0.917 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.180 0.820 28 H 0.180 0.820 29 H 0.185 0.815 30 H 0.208 0.792 31 H 0.208 0.792 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 16.521 -21.697 -0.011 27.271 hybrid contribution -0.044 0.895 0.000 0.896 sum 16.477 -20.802 -0.011 26.538 Atomic orbital electron populations 1.70129 1.08238 1.29193 1.49300 1.26146 0.95992 1.03930 0.93362 0.84930 0.78864 0.76157 0.78187 1.17688 1.19801 1.19788 1.21371 0.94848 0.89144 1.53845 0.89958 1.20552 0.87686 0.81619 0.95545 1.86419 1.43042 1.15011 1.82316 1.23228 0.88008 0.85615 0.72385 1.90687 1.18644 1.87054 1.46652 1.23873 1.01843 0.91979 1.12178 1.88472 1.03914 0.92824 1.87341 1.22215 1.00188 0.94885 1.00914 1.21727 0.88408 1.03442 1.03158 1.22131 1.02033 0.91693 0.88589 1.21783 0.93994 0.98467 0.99217 1.21404 0.92367 0.99454 0.92517 1.20844 0.79305 0.94800 1.20803 1.44078 1.04510 1.00313 0.97378 1.94447 1.87158 1.03375 1.53141 1.94532 1.46767 1.42758 1.56490 0.91686 0.97987 0.97996 0.82022 0.82026 0.81507 0.79239 0.79166 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 1.00 42.33 29.54 68.60 2.03 44.36 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.55 -31.57 9.44 25.60 0.24 -31.32 16 8 H 0.08 4.41 7.81 -2.91 -0.02 4.38 16 9 C 0.22 12.38 5.22 71.24 0.37 12.75 16 10 O -0.35 -16.34 10.20 -51.42 -0.52 -16.87 16 11 C 0.46 18.76 7.98 71.24 0.57 19.33 16 12 O -0.54 -26.40 15.61 21.96 0.34 -26.05 16 13 C -0.15 -3.80 4.93 71.24 0.35 -3.45 16 14 S 0.03 0.77 17.88 -56.49 -1.01 -0.24 16 15 C -0.07 -1.36 6.11 22.62 0.14 -1.22 16 16 C -0.14 -1.62 9.36 22.41 0.21 -1.41 16 17 C -0.02 -0.11 10.04 22.25 0.22 0.12 16 18 C -0.11 -0.52 10.04 22.30 0.22 -0.30 16 19 C -0.04 -0.46 9.55 22.25 0.21 -0.25 16 20 C -0.07 -1.43 6.87 36.52 0.25 -1.18 16 21 N 0.03 0.93 4.45 -46.13 -0.21 0.73 16 22 O -0.16 -4.73 18.45 18.89 0.35 -4.38 16 23 O -0.21 -7.35 15.81 18.90 0.30 -7.05 16 24 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 25 H 0.00 0.13 8.13 -2.39 -0.02 0.11 16 26 H 0.00 0.13 8.13 -2.39 -0.02 0.11 16 27 H 0.16 2.89 7.75 -2.39 -0.02 2.87 16 28 H 0.16 2.89 7.75 -2.39 -0.02 2.87 16 29 H 0.17 1.22 5.88 -2.91 -0.02 1.20 16 30 H 0.19 -0.69 8.06 -2.91 -0.02 -0.72 16 31 H 0.19 -0.65 8.06 -2.91 -0.02 -0.67 16 32 H 0.17 1.58 7.61 -2.91 -0.02 1.56 16 Total: -1.00 -81.45 309.06 5.98 -75.47 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: 1.17 Total: -4.18 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 3.25 Total: -6.19 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.08 Total: -54.87 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: 0.47 Total: -54.36 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -1.01 Total: -0.24 kcal Total: -81.45 5.98 -75.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001795136.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.814 kcal (2) G-P(sol) polarization free energy of solvation -81.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds