Wall clock time and date at job start Tue Mar 31 2020 04:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 111.70731 * 2 1 4 4 C 1.56949 * 112.02316 * 233.29139 * 2 1 3 5 5 H 1.08995 * 116.22713 * 63.64627 * 4 2 1 6 6 C 1.55925 * 100.65064 * 189.69631 * 4 2 1 7 7 C 1.54582 * 104.64673 * 33.77755 * 6 4 2 8 8 C 1.55929 * 104.64021 * 0.02562 * 7 6 4 9 9 C 1.53001 * 115.92146 * 199.96516 * 8 7 6 10 10 C 1.55925 * 105.23257 * 70.46340 * 8 7 6 11 11 H 1.09008 * 110.40060 * 48.32559 * 10 8 7 12 12 O 1.42902 * 110.40400 * 170.73731 * 10 8 7 13 13 C 1.42902 * 114.00189 * 260.92721 * 12 10 8 14 14 C 1.52994 * 109.47176 * 182.24773 * 13 12 10 15 15 N 1.46894 * 109.47312 * 177.65552 * 14 13 12 16 16 C 1.46910 * 109.47073 * 301.71230 * 15 14 13 17 17 C 1.46900 * 109.47388 * 61.71108 * 15 14 13 18 18 C 1.39801 * 109.47418 * 181.71394 * 15 14 13 19 19 H 1.08003 * 119.99891 * 359.97438 * 18 15 14 20 20 C 1.37877 * 120.00106 * 180.02562 * 18 15 14 21 21 N 1.31507 * 120.00121 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99885 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46897 * 60.00301 * 22 20 18 24 24 H 1.48501 * 109.46902 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47405 * 300.00093 * 22 20 18 26 26 C 1.55695 * 104.11447 * 290.48275 * 10 8 7 27 27 H 1.09007 * 109.46363 * 287.07442 * 1 2 3 28 28 H 1.08998 * 109.47198 * 47.06735 * 1 2 3 29 29 H 1.09000 * 109.46883 * 167.07676 * 1 2 3 30 30 H 1.09009 * 109.47119 * 186.61931 * 3 2 1 31 31 H 1.08995 * 109.47585 * 306.61784 * 3 2 1 32 32 H 1.09003 * 109.47345 * 66.62290 * 3 2 1 33 33 H 1.09001 * 110.40490 * 152.57077 * 6 4 2 34 34 H 1.09005 * 110.39999 * 274.87053 * 6 4 2 35 35 H 1.08999 * 110.40307 * 241.21009 * 7 6 4 36 36 H 1.08994 * 110.39841 * 118.78876 * 7 6 4 37 37 H 1.08996 * 109.47283 * 177.93217 * 9 8 7 38 38 H 1.08999 * 109.47209 * 297.93825 * 9 8 7 39 39 H 1.09003 * 109.46822 * 57.93577 * 9 8 7 40 40 H 1.08999 * 109.46376 * 302.24301 * 13 12 10 41 41 H 1.08996 * 109.47159 * 62.24345 * 13 12 10 42 42 H 1.09003 * 109.47267 * 297.65675 * 14 13 12 43 43 H 1.09005 * 109.47421 * 57.65060 * 14 13 12 44 44 H 1.08999 * 109.46788 * 65.66983 * 16 15 14 45 45 H 1.08999 * 109.46726 * 185.66725 * 16 15 14 46 46 H 1.08998 * 109.46636 * 305.66932 * 16 15 14 47 47 H 1.09001 * 109.46822 * 60.00073 * 17 15 14 48 48 H 1.08998 * 109.47593 * 180.02562 * 17 15 14 49 49 H 1.08997 * 109.47320 * 300.00465 * 17 15 14 50 50 H 0.97006 * 120.00614 * 179.97438 * 21 20 18 51 51 H 1.08999 * 109.80136 * 240.47997 * 26 10 8 52 52 H 1.09005 * 111.00314 * 118.18603 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0959 1.4215 0.0000 4 6 2.1186 -0.8697 -1.1664 5 1 1.8968 -0.5315 -2.1786 6 6 3.6269 -0.8977 -0.7722 7 6 3.6270 -0.8965 0.7736 8 6 2.1187 -0.8685 1.1678 9 6 1.8072 -0.3917 2.5878 10 6 1.5692 -2.2768 0.7857 11 1 2.2283 -3.0577 1.1653 12 8 0.2452 -2.4500 1.2948 13 6 0.1836 -3.1944 2.5130 14 6 -1.2776 -3.3649 2.9332 15 7 -1.3442 -4.1778 4.1549 16 6 -0.7146 -5.4824 3.9100 17 6 -0.6353 -3.4882 5.2412 18 6 -2.6813 -4.3663 4.5170 19 1 -3.4691 -3.9344 3.9176 20 6 -2.9942 -5.1027 5.6399 21 7 -2.0349 -5.6282 6.3700 22 14 -4.7808 -5.3540 6.1240 23 1 -5.4977 -6.0514 5.0263 24 1 -4.8480 -6.1759 7.3590 25 1 -5.4169 -4.0352 6.3712 26 6 1.5861 -2.2815 -0.7711 27 1 -0.3632 0.3018 0.9825 28 1 -0.3633 0.7000 -0.7524 29 1 -0.3633 -1.0016 -0.2298 30 1 3.1788 1.3815 -0.1185 31 1 1.6609 1.9858 -0.8248 32 1 1.8515 1.9099 0.9433 33 1 4.1021 -1.8024 -1.1515 34 1 4.1361 -0.0131 -1.1547 35 1 4.1358 -0.0103 1.1528 36 1 4.1021 -1.8006 1.1542 37 1 0.7278 -0.3787 2.7382 38 1 2.2662 -1.0696 3.3076 39 1 2.2059 0.6128 2.7294 40 1 0.6352 -4.1750 2.3627 41 1 0.7261 -2.6603 3.2931 42 1 -1.7175 -2.3860 3.1238 43 1 -1.8295 -3.8621 2.1355 44 1 0.3507 -5.3429 3.7265 45 1 -0.8525 -6.1217 4.7820 46 1 -1.1750 -5.9503 3.0399 47 1 -1.1024 -2.5203 5.4229 48 1 -0.6843 -4.0916 6.1476 49 1 0.4072 -3.3412 4.9589 50 1 -2.2550 -6.1461 7.1602 51 1 0.5747 -2.4261 -1.1510 52 1 2.2490 -3.0583 -1.1523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004480742.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:00 Heat of formation + Delta-G solvation = 36.478159 kcal Electronic energy + Delta-G solvation = -26756.266507 eV Core-core repulsion = 23452.246756 eV Total energy + Delta-G solvation = -3304.019751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.233 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.67778 -42.19691 -38.40203 -34.80877 -33.10684 -32.62481 -31.95101 -30.35058 -29.33001 -28.98561 -27.47269 -27.02715 -25.86108 -24.52982 -23.16445 -22.78391 -20.34842 -20.11029 -19.11040 -18.30457 -17.69224 -17.48410 -16.94902 -16.73906 -16.37592 -16.06154 -15.75461 -15.44155 -15.11202 -14.73196 -14.27351 -14.08646 -13.72707 -13.67271 -13.54454 -13.44807 -13.29892 -13.24284 -13.08290 -12.93778 -12.90130 -12.81608 -12.67225 -12.58036 -12.50993 -12.41530 -12.20318 -12.01415 -11.91700 -11.88323 -11.73762 -11.33994 -11.13366 -10.89395 -10.77712 -10.36774 -8.68961 -7.10963 1.24537 1.67352 1.85937 1.86831 2.32781 2.42702 2.67864 3.16422 3.26659 3.35003 3.36064 3.43776 3.50141 3.71684 3.73853 3.90533 3.94326 4.00834 4.07082 4.11301 4.17133 4.22070 4.24146 4.33825 4.35168 4.37903 4.47569 4.54167 4.57052 4.60464 4.70092 4.72057 4.72972 4.82479 4.84201 4.92478 4.94915 4.97179 4.98417 5.00485 5.07185 5.08404 5.12951 5.14919 5.21619 5.27106 5.35871 5.47085 5.55278 5.59434 5.99034 6.15018 6.83524 8.28269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.095 4.095 5 H 0.101 0.899 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.084 4.084 9 C -0.124 4.124 10 C 0.096 3.904 11 H 0.064 0.936 12 O -0.361 6.361 13 C 0.035 3.965 14 C 0.011 3.989 15 N -0.109 5.109 16 C -0.047 4.047 17 C -0.046 4.046 18 C -0.483 4.483 19 H 0.134 0.866 20 C 0.076 3.924 21 N -0.852 5.852 22 Si 0.952 3.048 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.258 1.258 26 C -0.119 4.119 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.140 0.860 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.139 0.861 49 H 0.073 0.927 50 H 0.304 0.696 51 H 0.079 0.921 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 2.431 -3.934 6.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.059 4.059 3 C -0.197 4.197 4 C -0.113 4.113 5 H 0.119 0.881 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.084 4.084 9 C -0.181 4.181 10 C 0.038 3.962 11 H 0.082 0.918 12 O -0.279 6.279 13 C -0.042 4.042 14 C -0.112 4.112 15 N 0.237 4.763 16 C -0.189 4.189 17 C -0.188 4.188 18 C -0.605 4.605 19 H 0.152 0.848 20 C -0.137 4.137 21 N -0.483 5.483 22 Si 0.774 3.226 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.182 1.182 26 C -0.156 4.156 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.093 0.907 45 H 0.158 0.842 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.157 0.843 49 H 0.092 0.908 50 H 0.116 0.884 51 H 0.097 0.903 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.679 2.361 -3.833 6.493 hybrid contribution -0.298 -0.300 0.424 0.599 sum 4.381 2.061 -3.410 5.921 Atomic orbital electron populations 1.21737 0.93512 1.02516 1.01392 1.22507 0.95434 0.94190 0.93747 1.21767 1.01063 0.95142 1.01722 1.23592 0.94835 0.94493 0.98349 0.88054 1.22670 0.96186 1.01884 0.95385 1.22599 0.95073 1.01894 0.95818 1.23275 0.95007 0.95168 0.94982 1.21349 1.01997 1.01101 0.93605 1.23459 0.82525 0.95691 0.94498 0.91788 1.87896 1.28127 1.73832 1.38043 1.22947 0.95298 0.96817 0.89142 1.23235 0.98438 1.00149 0.89370 1.41909 1.13956 1.10679 1.09739 1.24045 0.98043 0.88411 1.08372 1.24047 0.96797 1.01548 0.96377 1.21242 0.80314 1.42887 1.16075 0.84850 1.25367 1.03121 0.91693 0.93482 1.69389 1.33797 1.28993 1.16105 0.85457 0.77295 0.80279 0.79561 1.18240 1.19235 1.18232 1.23018 1.02332 0.97324 0.92970 0.92701 0.93322 0.90986 0.92175 0.92635 0.92606 0.91693 0.91459 0.91189 0.91943 0.91634 0.92839 0.91987 0.91974 0.91670 0.86578 0.86520 0.90732 0.84208 0.89114 0.88952 0.84331 0.90812 0.88434 0.90253 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.12 7.97 37.16 0.30 0.42 16 2 C -0.06 0.09 0.78 -150.21 -0.12 -0.03 16 3 C -0.14 0.18 8.44 37.16 0.31 0.50 16 4 C -0.09 0.17 4.51 -85.33 -0.38 -0.21 16 5 H 0.10 -0.18 8.14 -51.93 -0.42 -0.61 16 6 C -0.12 0.25 5.54 -24.34 -0.13 0.12 16 7 C -0.12 0.24 5.24 -24.33 -0.13 0.11 16 8 C -0.08 0.18 0.81 -149.22 -0.12 0.06 16 9 C -0.12 0.30 7.78 37.16 0.29 0.59 16 10 C 0.10 -0.23 2.52 -23.73 -0.06 -0.29 16 11 H 0.06 -0.18 7.48 -51.92 -0.39 -0.56 16 12 O -0.36 0.86 7.33 -35.23 -0.26 0.61 16 13 C 0.04 -0.15 4.63 37.15 0.17 0.03 16 14 C 0.01 -0.04 4.12 -3.83 -0.02 -0.06 16 15 N -0.11 0.21 0.02 -317.04 -0.01 0.21 16 16 C -0.05 0.10 7.29 60.07 0.44 0.54 16 17 C -0.05 0.10 7.40 60.06 0.44 0.54 16 18 C -0.48 -0.69 7.48 -14.04 -0.11 -0.79 16 19 H 0.13 0.16 7.60 -52.48 -0.40 -0.24 16 20 C 0.08 0.26 4.95 -17.82 -0.09 0.18 16 21 N -0.85 -3.53 8.91 55.43 0.49 -3.03 16 22 Si 0.95 3.40 29.54 -169.99 -5.02 -1.62 16 23 H -0.26 -1.11 7.11 56.52 0.40 -0.71 16 24 H -0.27 -1.32 7.11 56.52 0.40 -0.92 16 25 H -0.26 -1.11 7.11 56.52 0.40 -0.70 16 26 C -0.12 0.24 5.47 -23.70 -0.13 0.11 16 27 H 0.05 -0.03 7.24 -51.93 -0.38 -0.41 16 28 H 0.05 -0.03 8.12 -51.93 -0.42 -0.45 16 29 H 0.07 -0.04 4.74 -51.93 -0.25 -0.28 16 30 H 0.06 -0.08 5.45 -51.92 -0.28 -0.37 16 31 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.05 -0.06 7.49 -51.93 -0.39 -0.45 16 33 H 0.06 -0.14 7.84 -51.93 -0.41 -0.54 16 34 H 0.07 -0.12 7.27 -51.93 -0.38 -0.50 16 35 H 0.07 -0.13 7.56 -51.93 -0.39 -0.52 16 36 H 0.06 -0.14 7.87 -51.93 -0.41 -0.55 16 37 H 0.06 -0.14 6.94 -51.93 -0.36 -0.50 16 38 H 0.05 -0.16 7.74 -51.93 -0.40 -0.56 16 39 H 0.06 -0.12 7.53 -51.93 -0.39 -0.51 16 40 H 0.06 -0.30 6.18 -51.93 -0.32 -0.62 16 41 H 0.07 -0.31 4.99 -51.93 -0.26 -0.57 16 42 H 0.12 -0.45 8.14 -51.93 -0.42 -0.87 16 43 H 0.12 -0.44 8.12 -51.93 -0.42 -0.86 16 44 H 0.07 -0.32 6.33 -51.93 -0.33 -0.65 16 45 H 0.14 0.10 5.53 -51.93 -0.29 -0.18 16 46 H 0.09 -0.23 8.09 -51.93 -0.42 -0.65 16 47 H 0.09 -0.22 8.14 -51.93 -0.42 -0.65 16 48 H 0.14 0.08 5.66 -51.93 -0.29 -0.21 16 49 H 0.07 -0.33 6.20 -51.93 -0.32 -0.65 16 50 H 0.30 1.43 8.31 -40.82 -0.34 1.09 16 51 H 0.08 -0.11 7.02 -51.93 -0.36 -0.48 16 52 H 0.07 -0.18 7.84 -51.93 -0.41 -0.59 16 LS Contribution 359.76 15.07 5.42 5.42 Total: 0.00 -4.15 359.76 -8.19 -12.34 By element: Atomic # 1 Polarization: -6.25 SS G_CDS: -9.49 Total: -15.74 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 0.67 Total: 1.82 kcal Atomic # 7 Polarization: -3.31 SS G_CDS: 0.49 Total: -2.82 kcal Atomic # 8 Polarization: 0.86 SS G_CDS: -0.26 Total: 0.61 kcal Atomic # 14 Polarization: 3.40 SS G_CDS: -5.02 Total: -1.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -4.15 -8.19 -12.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004480742.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.820 kcal (2) G-P(sol) polarization free energy of solvation -4.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds