Wall clock time and date at job start Tue Mar 31 2020 04:11:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09007 * 109.46992 * 2 1
4 4 S 1.81395 * 109.47296 * 239.99856 * 2 1 3
5 5 C 1.76205 * 102.99967 * 67.34455 * 4 2 1
6 6 C 1.38973 * 120.08172 * 84.22312 * 5 4 2
7 7 C 1.38081 * 119.91802 * 180.27724 * 6 5 4
8 8 C 1.38310 * 120.07607 * 359.45014 * 7 6 5
9 9 N 1.48010 * 119.91446 * 180.27929 * 8 7 6
10 10 O 1.21797 * 120.00135 * 359.97438 * 9 8 7
11 11 O 1.21795 * 119.99391 * 179.97438 * 9 8 7
12 12 C 1.38301 * 120.16516 * 0.29621 * 8 7 6
13 13 C 1.38080 * 120.07531 * 359.97438 * 12 8 7
14 14 C 1.50704 * 109.46979 * 119.99408 * 2 1 3
15 15 O 1.21211 * 119.99179 * 100.00507 * 14 2 1
16 16 O 1.34309 * 120.00579 * 280.00026 * 14 2 1
17 17 C 1.34911 * 117.00000 * 179.97438 * 16 14 2
18 18 H 1.08003 * 120.00520 * 0.02562 * 17 16 14
19 19 C 1.38759 * 120.00135 * 180.02562 * 17 16 14
20 20 N 1.31446 * 119.99380 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 120.00279 * 180.02562 * 19 17 16
22 22 H 1.48493 * 109.46877 * 90.00220 * 21 19 17
23 23 H 1.48505 * 109.46947 * 210.00151 * 21 19 17
24 24 H 1.48498 * 109.47020 * 330.00189 * 21 19 17
25 25 H 1.09003 * 109.46948 * 301.50627 * 1 2 3
26 26 H 1.08995 * 109.46902 * 61.51017 * 1 2 3
27 27 H 1.08997 * 109.46623 * 181.50695 * 1 2 3
28 28 H 1.07996 * 120.04133 * 0.02562 * 6 5 4
29 29 H 1.07997 * 119.96349 * 179.73088 * 7 6 5
30 30 H 1.07992 * 119.96098 * 179.97438 * 12 8 7
31 31 H 1.08005 * 120.03848 * 179.97438 * 13 12 8
32 32 H 0.97004 * 119.99299 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 16 2.1347 -0.8551 -1.4810
5 6 1.6434 0.2199 -2.7878
6 6 2.4409 1.3036 -3.1354
7 6 2.0497 2.1472 -4.1562
8 6 0.8715 1.9081 -4.8400
9 7 0.4588 2.8111 -5.9377
10 8 1.1561 3.7636 -6.2375
11 8 -0.5783 2.6016 -6.5411
12 6 0.0779 0.8275 -4.5003
13 6 0.4600 -0.0171 -3.4769
14 6 2.0324 -0.7103 1.2306
15 8 2.4063 -1.8609 1.1559
16 8 2.0658 -0.0685 2.4099
17 6 2.5259 -0.7620 3.4718
18 1 2.8469 -1.7860 3.3501
19 6 2.5868 -0.1596 4.7203
20 7 2.1957 1.0865 4.8685
21 14 3.2246 -1.1195 6.1904
22 1 4.6934 -0.9330 6.3039
23 1 2.5660 -0.6267 7.4269
24 1 2.9213 -2.5618 6.0092
25 1 -0.3633 0.5371 0.8762
26 1 -0.3633 0.4902 -0.9032
27 1 -0.3632 -1.0273 0.0270
28 1 3.3634 1.4882 -2.6051
29 1 2.6668 2.9921 -4.4240
30 1 -0.8416 0.6441 -5.0361
31 1 -0.1604 -0.8605 -3.2119
32 1 2.2379 1.5075 5.7414
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000007296066.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:11:19
Heat of formation + Delta-G solvation = -53.146465 kcal
Electronic energy + Delta-G solvation = -20328.984262 eV
Core-core repulsion = 16771.009755 eV
Total energy + Delta-G solvation = -3557.974507 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 297.055 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-42.44580 -39.60581 -39.22863 -36.83677 -35.47809 -33.15339 -32.32586 -32.12431
-31.86536 -26.92780 -25.91100 -24.26140 -23.49635 -22.85042 -20.48925 -19.68954
-18.91791 -18.10733 -17.92770 -17.79952 -16.71203 -15.80418 -15.49638 -15.18813
-15.02743 -14.64571 -14.34075 -14.27806 -13.87508 -13.40371 -12.94832 -12.55447
-12.04130 -12.00334 -11.83312 -11.76624 -11.62578 -11.40639 -11.40035 -11.27352
-10.71352 -10.55772 -10.51570 -9.99741 -9.81148 -9.50637 -9.25507 -8.72649
-7.87898 -6.56290 -4.24784 -0.64342 0.55326 0.81864 1.05712 1.37524
2.29325 2.90668 2.99654 3.10890 3.16454 3.31245 3.76792 3.96610
4.08241 4.27935 4.46899 4.51653 4.83663 4.88561 5.10459 5.14134
5.16662 5.23849 5.31398 5.53388 5.60408 5.80821 5.81019 6.11155
6.15655 6.43839 7.24421 7.35342 7.77489 8.48317 8.91810 9.62558
10.60940
Molecular weight = 297.05amu
Principal moments of inertia in cm(-1)
A = 0.035460 B = 0.002926 C = 0.002847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 789.430317 B = 9568.246491 C = 9834.236963
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.063 4.063
3 H 0.112 0.888
4 S -0.065 6.065
5 C -0.080 4.080
6 C -0.073 4.073
7 C -0.062 4.062
8 C -0.030 4.030
9 N 0.027 4.973
10 O -0.158 6.158
11 O -0.159 6.159
12 C -0.063 4.063
13 C -0.069 4.069
14 C 0.413 3.587
15 O -0.537 6.537
16 O -0.203 6.203
17 C -0.384 4.384
18 H 0.099 0.901
19 C 0.044 3.956
20 N -0.861 5.861
21 Si 0.946 3.054
22 H -0.272 1.272
23 H -0.277 1.277
24 H -0.265 1.265
25 H 0.081 0.919
26 H 0.061 0.939
27 H 0.074 0.926
28 H 0.158 0.842
29 H 0.158 0.842
30 H 0.158 0.842
31 H 0.158 0.842
32 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.202 1.566 -15.419 15.825
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.192 4.192
3 H 0.130 0.870
4 S 0.169 5.831
5 C -0.191 4.191
6 C -0.094 4.094
7 C -0.083 4.083
8 C -0.112 4.112
9 N 0.547 4.453
10 O -0.374 6.374
11 O -0.375 6.375
12 C -0.084 4.084
13 C -0.091 4.091
14 C 0.257 3.743
15 O -0.434 6.434
16 O -0.110 6.110
17 C -0.460 4.460
18 H 0.116 0.884
19 C -0.161 4.161
20 N -0.498 5.498
21 Si 0.770 3.230
22 H -0.197 1.197
23 H -0.202 1.202
24 H -0.190 1.190
25 H 0.100 0.900
26 H 0.080 0.920
27 H 0.093 0.907
28 H 0.175 0.825
29 H 0.175 0.825
30 H 0.175 0.825
31 H 0.176 0.824
32 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -2.352 -0.004 -14.720 14.907
hybrid contribution -0.438 1.151 0.429 1.304
sum -2.790 1.147 -14.291 14.606
Atomic orbital electron populations
1.22001 0.90773 1.04004 1.03126 1.22987 1.00676 1.02908 0.92588
0.86957 1.86293 1.75321 1.27327 0.94179 1.22719 0.96624 0.98739
1.01039 1.21835 1.00012 0.92251 0.95317 1.21142 0.93645 0.99958
0.93523 1.21300 0.99808 0.95744 0.94394 1.43657 0.99989 1.00686
1.00989 1.94549 1.52169 1.20258 1.70472 1.94542 1.12685 1.78142
1.52129 1.21132 0.99598 0.91431 0.96262 1.21766 0.95104 0.98787
0.93409 1.21896 0.81172 0.85944 0.85242 1.90608 1.48642 1.18318
1.85844 1.83850 1.69394 1.42874 1.14839 1.21291 1.42842 0.97965
0.83893 0.88379 1.25377 0.96433 0.96159 0.98083 1.69990 1.43446
1.11445 1.24879 0.85635 0.78941 0.79434 0.79003 1.19716 1.20196
1.18957 0.89975 0.92050 0.90670 0.82471 0.82456 0.82477 0.82423
0.91844
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.97 9.11 37.16 0.34 -1.63 16
2 C -0.06 -1.05 3.25 -27.88 -0.09 -1.14 16
3 H 0.11 1.74 8.14 -51.92 -0.42 1.32 16
4 S -0.06 -0.94 20.33 -107.50 -2.19 -3.13 16
5 C -0.08 -0.86 5.22 -39.04 -0.20 -1.06 16
6 C -0.07 -0.69 9.79 -39.37 -0.39 -1.08 16
7 C -0.06 -0.56 9.55 -39.61 -0.38 -0.94 16
8 C -0.03 -0.30 6.85 -79.90 -0.55 -0.85 16
9 N 0.03 0.33 4.45 33.99 0.15 0.48 16
10 O -0.16 -2.02 18.44 -29.46 -0.54 -2.56 16
11 O -0.16 -2.00 18.44 -29.46 -0.54 -2.54 16
12 C -0.06 -0.55 9.55 -39.62 -0.38 -0.93 16
13 C -0.07 -0.62 9.21 -39.37 -0.36 -0.98 16
14 C 0.41 9.56 7.08 36.01 0.25 9.82 16
15 O -0.54 -13.72 15.28 -19.05 -0.29 -14.01 16
16 O -0.20 -5.50 9.75 -20.67 -0.20 -5.70 16
17 C -0.38 -10.86 9.65 30.92 0.30 -10.56 16
18 H 0.10 2.80 6.86 -52.48 -0.36 2.44 16
19 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16
20 N -0.86 -24.18 13.67 55.48 0.76 -23.43 16
21 Si 0.95 20.47 29.55 -169.99 -5.02 15.44 16
22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16
23 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16
24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
26 H 0.06 0.68 7.13 -51.93 -0.37 0.31 16
27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
28 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16
29 H 0.16 1.19 7.60 -52.49 -0.40 0.79 16
30 H 0.16 1.10 7.60 -52.49 -0.40 0.70 16
31 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16
32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16
LS Contribution 314.01 15.07 4.73 4.73
Total: -1.00 -32.19 314.01 -7.47 -39.67
By element:
Atomic # 1 Polarization: 2.07 SS G_CDS: -2.78 Total: -0.70 kcal
Atomic # 6 Polarization: -6.71 SS G_CDS: -1.55 Total: -8.26 kcal
Atomic # 7 Polarization: -23.86 SS G_CDS: 0.91 Total: -22.95 kcal
Atomic # 8 Polarization: -23.23 SS G_CDS: -1.58 Total: -24.81 kcal
Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal
Atomic # 16 Polarization: -0.94 SS G_CDS: -2.19 Total: -3.13 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -32.19 -7.47 -39.67 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000007296066.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.480 kcal
(2) G-P(sol) polarization free energy of solvation -32.193 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.146 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds