Wall clock time and date at job start Tue Mar 31 2020 04:11:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09007 * 109.46992 * 2 1
4 4 S 1.81395 * 109.47296 * 239.99856 * 2 1 3
5 5 C 1.76205 * 102.99967 * 67.34455 * 4 2 1
6 6 C 1.38973 * 120.08172 * 84.22312 * 5 4 2
7 7 C 1.38081 * 119.91802 * 180.27724 * 6 5 4
8 8 C 1.38310 * 120.07607 * 359.45014 * 7 6 5
9 9 N 1.48010 * 119.91446 * 180.27929 * 8 7 6
10 10 O 1.21797 * 120.00135 * 359.97438 * 9 8 7
11 11 O 1.21795 * 119.99391 * 179.97438 * 9 8 7
12 12 C 1.38301 * 120.16516 * 0.29621 * 8 7 6
13 13 C 1.38080 * 120.07531 * 359.97438 * 12 8 7
14 14 C 1.50704 * 109.46979 * 119.99408 * 2 1 3
15 15 O 1.21211 * 119.99179 * 100.00507 * 14 2 1
16 16 O 1.34309 * 120.00579 * 280.00026 * 14 2 1
17 17 C 1.34911 * 117.00000 * 179.97438 * 16 14 2
18 18 H 1.08003 * 120.00520 * 0.02562 * 17 16 14
19 19 C 1.38759 * 120.00135 * 180.02562 * 17 16 14
20 20 N 1.31446 * 119.99380 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 120.00279 * 180.02562 * 19 17 16
22 22 H 1.48493 * 109.46877 * 90.00220 * 21 19 17
23 23 H 1.48505 * 109.46947 * 210.00151 * 21 19 17
24 24 H 1.48498 * 109.47020 * 330.00189 * 21 19 17
25 25 H 1.09003 * 109.46948 * 301.50627 * 1 2 3
26 26 H 1.08995 * 109.46902 * 61.51017 * 1 2 3
27 27 H 1.08997 * 109.46623 * 181.50695 * 1 2 3
28 28 H 1.07996 * 120.04133 * 0.02562 * 6 5 4
29 29 H 1.07997 * 119.96349 * 179.73088 * 7 6 5
30 30 H 1.07992 * 119.96098 * 179.97438 * 12 8 7
31 31 H 1.08005 * 120.03848 * 179.97438 * 13 12 8
32 32 H 0.97004 * 119.99299 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 16 2.1347 -0.8551 -1.4810
5 6 1.6434 0.2199 -2.7878
6 6 2.4409 1.3036 -3.1354
7 6 2.0497 2.1472 -4.1562
8 6 0.8715 1.9081 -4.8400
9 7 0.4588 2.8111 -5.9377
10 8 1.1561 3.7636 -6.2375
11 8 -0.5783 2.6016 -6.5411
12 6 0.0779 0.8275 -4.5003
13 6 0.4600 -0.0171 -3.4769
14 6 2.0324 -0.7103 1.2306
15 8 2.4063 -1.8609 1.1559
16 8 2.0658 -0.0685 2.4099
17 6 2.5259 -0.7620 3.4718
18 1 2.8469 -1.7860 3.3501
19 6 2.5868 -0.1596 4.7203
20 7 2.1957 1.0865 4.8685
21 14 3.2246 -1.1195 6.1904
22 1 4.6934 -0.9330 6.3039
23 1 2.5660 -0.6267 7.4269
24 1 2.9213 -2.5618 6.0092
25 1 -0.3633 0.5371 0.8762
26 1 -0.3633 0.4902 -0.9032
27 1 -0.3632 -1.0273 0.0270
28 1 3.3634 1.4882 -2.6051
29 1 2.6668 2.9921 -4.4240
30 1 -0.8416 0.6441 -5.0361
31 1 -0.1604 -0.8605 -3.2119
32 1 2.2379 1.5075 5.7414
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000007296066.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:11:19
Heat of formation + Delta-G solvation = -70.465203 kcal
Electronic energy + Delta-G solvation = -20329.735259 eV
Core-core repulsion = 16771.009755 eV
Total energy + Delta-G solvation = -3558.725504 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 297.055 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-43.33358 -41.14978 -40.38248 -37.75949 -37.43994 -34.61822 -34.13890 -33.10403
-32.59671 -27.91651 -27.72418 -25.76347 -24.25842 -23.70500 -22.19959 -20.50761
-19.97509 -19.81319 -19.27496 -18.68577 -18.36516 -16.96284 -16.67682 -16.51440
-16.50209 -16.01934 -15.89244 -14.95486 -14.84245 -14.68157 -14.36693 -13.90652
-13.70571 -13.14838 -13.04195 -12.87123 -12.83601 -12.67120 -12.41974 -12.36972
-12.35629 -12.18086 -12.07223 -11.67078 -11.14622 -10.74518 -10.51168 -10.48064
-9.03093 -8.59337 -6.39500 -1.52662 -0.17882 -0.14985 0.19325 0.37911
1.16233 1.28612 1.34154 1.50261 1.57138 2.06326 2.11923 2.56849
2.92318 3.25525 3.38841 3.69032 3.75463 3.76143 3.87307 4.19336
4.36968 4.39288 4.57454 4.58550 4.60123 4.68646 4.88512 5.01029
5.02061 5.11817 5.28859 5.76100 6.39478 6.53129 6.85544 7.63682
8.60576
Molecular weight = 297.05amu
Principal moments of inertia in cm(-1)
A = 0.035460 B = 0.002926 C = 0.002847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 789.430317 B = 9568.246491 C = 9834.236963
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.061 4.061
3 H 0.124 0.876
4 S -0.082 6.082
5 C -0.084 4.084
6 C -0.070 4.070
7 C -0.057 4.057
8 C -0.037 4.037
9 N 0.027 4.973
10 O -0.177 6.177
11 O -0.166 6.166
12 C -0.054 4.054
13 C -0.060 4.060
14 C 0.414 3.586
15 O -0.564 6.564
16 O -0.233 6.233
17 C -0.421 4.421
18 H 0.084 0.916
19 C 0.000 4.000
20 N -0.898 5.898
21 Si 1.016 2.984
22 H -0.260 1.260
23 H -0.260 1.260
24 H -0.263 1.263
25 H 0.069 0.931
26 H 0.098 0.902
27 H 0.073 0.927
28 H 0.168 0.832
29 H 0.172 0.828
30 H 0.178 0.822
31 H 0.178 0.822
32 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.613 1.526 -16.114 16.584
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.189 4.189
3 H 0.142 0.858
4 S 0.152 5.848
5 C -0.196 4.196
6 C -0.091 4.091
7 C -0.078 4.078
8 C -0.120 4.120
9 N 0.544 4.456
10 O -0.390 6.390
11 O -0.382 6.382
12 C -0.075 4.075
13 C -0.081 4.081
14 C 0.260 3.740
15 O -0.462 6.462
16 O -0.141 6.141
17 C -0.497 4.497
18 H 0.102 0.898
19 C -0.201 4.201
20 N -0.535 5.535
21 Si 0.835 3.165
22 H -0.185 1.185
23 H -0.184 1.184
24 H -0.187 1.187
25 H 0.088 0.912
26 H 0.117 0.883
27 H 0.092 0.908
28 H 0.185 0.815
29 H 0.190 0.810
30 H 0.195 0.805
31 H 0.196 0.804
32 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -2.759 -0.023 -15.439 15.684
hybrid contribution -0.332 1.153 0.447 1.280
sum -3.091 1.130 -14.992 15.349
Atomic orbital electron populations
1.21997 0.88539 1.04239 1.04423 1.22996 1.02353 1.02769 0.90794
0.85809 1.86387 1.75802 1.28331 0.94296 1.22553 0.97988 0.98912
1.00171 1.21932 1.00225 0.91703 0.95269 1.21272 0.93444 1.00165
0.92928 1.21506 1.00532 0.95899 0.94028 1.43903 0.99746 1.00725
1.01211 1.94548 1.52329 1.21019 1.71104 1.94531 1.12920 1.78193
1.52599 1.21339 0.99945 0.90420 0.95803 1.21941 0.94408 0.99057
0.92700 1.23125 0.79079 0.85908 0.85897 1.90574 1.49342 1.19827
1.86437 1.83871 1.70488 1.43727 1.15998 1.21442 1.44991 0.97925
0.85297 0.89831 1.26512 0.95871 0.97177 1.00523 1.70063 1.44306
1.12966 1.26195 0.84645 0.78860 0.77839 0.75199 1.18472 1.18398
1.18729 0.91239 0.88289 0.90832 0.81456 0.81037 0.80458 0.80425
0.91046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.57 9.11 71.98 0.66 -2.91 16
2 C -0.06 -1.99 3.25 29.85 0.10 -1.90 16
3 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16
4 S -0.08 -2.27 20.33 -56.49 -1.15 -3.42 16
5 C -0.08 -1.59 5.22 22.62 0.12 -1.48 16
6 C -0.07 -1.16 9.79 22.41 0.22 -0.94 16
7 C -0.06 -0.90 9.55 22.25 0.21 -0.69 16
8 C -0.04 -0.65 6.85 36.41 0.25 -0.40 16
9 N 0.03 0.61 4.45 -46.39 -0.21 0.40 16
10 O -0.18 -4.27 18.44 18.89 0.35 -3.93 16
11 O -0.17 -3.88 18.44 18.89 0.35 -3.53 16
12 C -0.05 -0.77 9.55 22.25 0.21 -0.55 16
13 C -0.06 -0.87 9.21 22.41 0.21 -0.67 16
14 C 0.41 19.60 7.08 71.24 0.50 20.11 16
15 O -0.56 -29.57 15.28 20.77 0.32 -29.25 16
16 O -0.23 -13.06 9.75 14.98 0.15 -12.91 16
17 C -0.42 -24.60 9.65 67.94 0.66 -23.94 16
18 H 0.08 4.97 6.86 -2.91 -0.02 4.95 16
19 C 0.00 0.01 5.49 84.88 0.47 0.48 16
20 N -0.90 -51.11 13.67 21.63 0.30 -50.82 16
21 Si 1.02 41.87 29.55 68.60 2.03 43.90 16
22 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16
23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16
24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16
25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
26 H 0.10 1.89 7.13 -2.39 -0.02 1.88 16
27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
28 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16
29 H 0.17 2.19 7.60 -2.91 -0.02 2.16 16
30 H 0.18 1.81 7.60 -2.91 -0.02 1.79 16
31 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16
32 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16
Total: -1.00 -71.54 314.01 6.89 -64.65
By element:
Atomic # 1 Polarization: 6.64 SS G_CDS: 1.16 Total: 7.80 kcal
Atomic # 6 Polarization: -16.48 SS G_CDS: 3.60 Total: -12.89 kcal
Atomic # 7 Polarization: -50.51 SS G_CDS: 0.09 Total: -50.42 kcal
Atomic # 8 Polarization: -50.78 SS G_CDS: 1.16 Total: -49.62 kcal
Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal
Atomic # 16 Polarization: -2.27 SS G_CDS: -1.15 Total: -3.42 kcal
Total: -71.54 6.89 -64.65 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000007296066.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.818 kcal
(2) G-P(sol) polarization free energy of solvation -71.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.888 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.465 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds