Wall clock time and date at job start Tue Mar 31 2020 04:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47072 * 2 1 4 4 N 1.46502 * 109.46479 * 120.00070 * 2 1 3 5 5 C 1.34777 * 119.99537 * 120.00222 * 4 2 1 6 6 O 1.21287 * 119.99984 * 175.01967 * 5 4 2 7 7 C 1.50693 * 120.00413 * 355.01421 * 5 4 2 8 8 N 1.46498 * 109.47345 * 176.55369 * 7 5 4 9 9 C 1.36939 * 120.00021 * 270.00023 * 8 7 5 10 10 H 1.08000 * 120.00200 * 198.72840 * 9 8 7 11 11 C 1.38814 * 120.00101 * 18.73472 * 9 8 7 12 12 N 1.31615 * 119.99742 * 4.11173 * 11 9 8 13 13 Si 1.86797 * 120.00146 * 184.11197 * 11 9 8 14 14 H 1.48493 * 109.47160 * 90.00015 * 13 11 9 15 15 H 1.48504 * 109.47104 * 210.00241 * 13 11 9 16 16 H 1.48502 * 109.47175 * 329.99713 * 13 11 9 17 17 C 1.46500 * 120.00051 * 90.00095 * 8 7 5 18 18 C 1.54272 * 110.03334 * 116.65994 * 17 8 7 19 19 C 1.54963 * 104.15886 * 95.75648 * 18 17 8 20 20 C 1.54884 * 102.78076 * 37.88712 * 19 18 17 21 21 C 1.53878 * 110.03509 * 233.87846 * 17 8 7 22 22 C 1.46500 * 120.00241 * 299.99548 * 4 2 1 23 23 C 1.52993 * 109.47005 * 123.37675 * 22 4 2 24 24 C 1.53004 * 109.46947 * 243.37765 * 22 4 2 25 25 H 1.08996 * 109.46991 * 300.00114 * 1 2 3 26 26 H 1.08998 * 109.46949 * 59.99824 * 1 2 3 27 27 H 1.08993 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46941 * 239.99332 * 2 1 3 29 29 H 1.09004 * 109.46439 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47038 * 299.99643 * 3 2 1 31 31 H 1.08996 * 109.47306 * 60.00078 * 3 2 1 32 32 H 1.09003 * 109.47249 * 56.55774 * 7 5 4 33 33 H 1.08994 * 109.47516 * 296.55499 * 7 5 4 34 34 H 0.96996 * 119.99887 * 185.00948 * 12 11 9 35 35 H 1.08995 * 110.01588 * 355.26874 * 17 8 7 36 36 H 1.08998 * 110.48751 * 214.40393 * 18 17 8 37 37 H 1.09001 * 110.48406 * 337.04413 * 18 17 8 38 38 H 1.09009 * 110.71981 * 279.57444 * 19 18 17 39 39 H 1.09004 * 110.92469 * 156.30082 * 19 18 17 40 40 H 1.08998 * 110.49069 * 203.40690 * 20 19 18 41 41 H 1.08996 * 110.59857 * 80.81662 * 20 19 18 42 42 H 1.09003 * 110.02744 * 359.95088 * 21 17 8 43 43 H 1.08993 * 110.03223 * 121.37753 * 21 17 8 44 44 H 1.08997 * 109.46852 * 3.37700 * 22 4 2 45 45 H 1.09001 * 109.47042 * 66.40329 * 23 22 4 46 46 H 1.08997 * 109.47239 * 186.39551 * 23 22 4 47 47 H 1.08993 * 109.47706 * 306.40243 * 23 22 4 48 48 H 1.08999 * 109.47039 * 64.10821 * 24 22 4 49 49 H 1.09003 * 109.46585 * 184.10280 * 24 22 4 50 50 H 1.08992 * 109.47199 * 304.10653 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7931 -1.7865 1.0725 6 8 3.2716 -2.3054 2.0589 7 6 3.0650 -2.3671 -0.2912 8 7 3.9919 -3.4947 -0.1660 9 6 5.3426 -3.2820 -0.2395 10 1 6.0083 -4.1058 -0.4510 11 6 5.8564 -2.0077 -0.0421 12 7 5.0547 -1.0199 0.2953 13 14 7.6856 -1.6947 -0.2554 14 1 7.9623 -1.3183 -1.6649 15 1 8.1070 -0.5905 0.6438 16 1 8.4416 -2.9265 0.0857 17 6 3.4737 -4.8497 0.0378 18 6 3.8528 -5.7461 -1.1592 19 6 5.1463 -6.4651 -0.6997 20 6 4.8720 -6.7386 0.7999 21 6 4.1217 -5.4802 1.2830 22 6 1.6644 -0.1901 2.5268 23 6 0.9736 -1.2998 3.3220 24 6 2.9331 0.2491 3.2605 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 3.5071 -1.6026 -0.9301 33 1 2.1299 -2.7127 -0.7320 34 1 5.4003 -0.1161 0.3623 35 1 2.3904 -4.8213 0.1546 36 1 3.0635 -6.4711 -1.3579 37 1 4.0462 -5.1394 -2.0439 38 1 6.0129 -5.8151 -0.8216 39 1 5.2865 -7.3993 -1.2435 40 1 5.8092 -6.8562 1.3439 41 1 4.2483 -7.6243 0.9204 42 1 4.8223 -4.7782 1.7351 43 1 3.3528 -5.7576 2.0040 44 1 0.9893 0.6599 2.4275 45 1 1.6847 -2.1020 3.5192 46 1 0.6094 -0.8968 4.2670 47 1 0.1348 -1.6911 2.7464 48 1 3.3859 1.0885 2.7327 49 1 2.6787 0.5531 4.2759 50 1 3.6384 -0.5811 3.2956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072291844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:38 Heat of formation + Delta-G solvation = -15.304818 kcal Electronic energy + Delta-G solvation = -27243.080002 eV Core-core repulsion = 23885.044602 eV Total energy + Delta-G solvation = -3358.035401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 296.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.11457 -37.67473 -35.50480 -34.02667 -32.89810 -30.75976 -29.69806 -27.76857 -27.09983 -27.01833 -26.22770 -26.19893 -22.77728 -21.20922 -20.92081 -19.81677 -18.98085 -17.49743 -16.30801 -16.15374 -15.52539 -14.83010 -14.51388 -14.07807 -13.99441 -13.56665 -13.22995 -13.15082 -13.01051 -12.71027 -12.46668 -12.43799 -12.26406 -12.00809 -11.77937 -11.37264 -11.11767 -11.08373 -10.93197 -10.80825 -10.70594 -10.59673 -10.48182 -10.34363 -10.32273 -10.29478 -10.21505 -10.19713 -10.00357 -9.79743 -9.56086 -9.42785 -8.59336 -7.93876 -7.49213 -6.66593 -5.66523 -3.06583 3.41662 3.49638 3.49872 4.04074 4.42993 4.62410 5.26170 5.38338 5.43034 5.48601 5.51241 5.55023 5.64550 5.68032 5.79441 5.83562 5.89253 5.92931 6.00602 6.12746 6.18650 6.19276 6.26383 6.30773 6.35536 6.39040 6.41596 6.48782 6.50659 6.58666 6.61840 6.62709 6.65530 6.71274 6.78410 6.85019 6.90261 6.93374 6.97420 7.18450 7.21194 7.38513 7.50264 7.82745 7.91967 8.44114 8.80602 9.31001 9.88342 10.04364 10.40402 11.39185 Molecular weight = 296.22amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.006847 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.851192 B = 4088.347383 C = 4909.414089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 C -0.157 4.157 4 N -0.618 5.618 5 C 0.547 3.453 6 O -0.534 6.534 7 C 0.167 3.833 8 N -0.569 5.569 9 C -0.228 4.228 10 H 0.079 0.921 11 C -0.001 4.001 12 N -0.906 5.906 13 Si 0.906 3.094 14 H -0.292 1.292 15 H -0.294 1.294 16 H -0.283 1.283 17 C 0.176 3.824 18 C -0.134 4.134 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.126 4.126 22 C 0.154 3.846 23 C -0.162 4.162 24 C -0.158 4.158 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.022 0.978 34 H 0.250 0.750 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.045 0.955 49 H 0.038 0.962 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 0.311 -1.193 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 C -0.215 4.215 4 N -0.356 5.356 5 C 0.336 3.664 6 O -0.409 6.409 7 C 0.037 3.963 8 N -0.288 5.288 9 C -0.357 4.357 10 H 0.096 0.904 11 C -0.197 4.197 12 N -0.554 5.554 13 Si 0.738 3.262 14 H -0.220 1.220 15 H -0.221 1.221 16 H -0.209 1.209 17 C 0.068 3.932 18 C -0.173 4.173 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.165 4.165 22 C 0.050 3.950 23 C -0.220 4.220 24 C -0.216 4.216 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.057 0.943 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.306 0.142 -0.572 8.327 hybrid contribution 1.006 0.613 0.083 1.181 sum -7.300 0.756 -0.489 7.355 Atomic orbital electron populations 1.22224 0.96813 1.01686 1.01251 1.20846 0.92323 0.93366 0.89719 1.22131 1.02766 0.96177 1.00422 1.48252 1.53658 1.29958 1.03695 1.21682 0.73683 0.77843 0.93167 1.90416 1.48333 1.61835 1.40276 1.20744 0.90763 0.91599 0.93211 1.43918 1.02655 0.99998 1.82217 1.19320 0.82665 0.94449 1.39295 0.90376 1.24820 0.97257 0.97066 1.00590 1.69561 1.33206 0.99463 1.53141 0.86209 0.85679 0.77395 0.76949 1.22006 1.22083 1.20913 1.20909 0.94981 0.85549 0.91744 1.22850 0.96263 0.98160 1.00076 1.22507 0.99138 0.98728 0.95339 1.22297 0.99311 0.97859 0.96423 1.22535 0.99499 0.96186 0.98322 1.20567 0.95327 0.95051 0.84044 1.22162 1.00543 1.00660 0.98634 1.22121 0.99234 1.02667 0.97624 0.92983 0.92465 0.92706 0.89193 0.91333 0.93013 0.93451 0.87513 0.96016 0.93858 0.93593 0.93475 0.91403 0.90862 0.93627 0.93025 0.93327 0.89675 0.94085 0.91986 0.90350 0.93548 0.93651 0.93566 0.94333 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.18 37.16 0.34 -1.71 16 2 C 0.14 2.24 3.10 -67.93 -0.21 2.03 16 3 C -0.16 -2.31 9.18 37.16 0.34 -1.97 16 4 N -0.62 -11.56 2.31 -158.59 -0.37 -11.92 16 5 C 0.55 12.31 4.85 -10.99 -0.05 12.25 16 6 O -0.53 -13.82 12.50 5.55 0.07 -13.75 16 7 C 0.17 3.75 3.78 -5.20 -0.02 3.73 16 8 N -0.57 -13.43 1.92 -165.75 -0.32 -13.74 16 9 C -0.23 -5.86 8.11 -15.06 -0.12 -5.98 16 10 H 0.08 2.00 5.21 -52.49 -0.27 1.73 16 11 C 0.00 -0.03 5.27 -17.43 -0.09 -0.13 16 12 N -0.91 -23.90 8.26 55.49 0.46 -23.45 16 13 Si 0.91 21.81 29.56 -169.99 -5.02 16.79 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.18 3.66 3.46 -66.81 -0.23 3.43 16 18 C -0.13 -2.43 6.18 -25.03 -0.15 -2.59 16 19 C -0.12 -2.10 6.49 -24.70 -0.16 -2.26 16 20 C -0.12 -2.12 6.83 -25.07 -0.17 -2.29 16 21 C -0.13 -2.60 6.24 -25.61 -0.16 -2.76 16 22 C 0.15 2.68 2.36 -67.93 -0.16 2.52 16 23 C -0.16 -2.73 8.96 37.15 0.33 -2.39 16 24 C -0.16 -2.99 9.22 37.16 0.34 -2.65 16 25 H 0.05 0.64 6.97 -51.93 -0.36 0.28 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.50 5.75 -51.93 -0.30 1.20 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.66 7.13 -51.93 -0.37 0.29 16 32 H 0.11 2.57 5.61 -51.93 -0.29 2.28 16 33 H 0.02 0.45 7.93 -51.93 -0.41 0.04 16 34 H 0.25 6.69 8.32 -40.82 -0.34 6.35 16 35 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.30 8.04 -51.93 -0.42 0.89 16 38 H 0.07 1.42 6.01 -51.92 -0.31 1.11 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 2.10 7.13 -51.93 -0.37 1.73 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.95 6.06 -51.93 -0.31 0.63 16 45 H 0.08 1.58 6.31 -51.93 -0.33 1.25 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 2.01 6.16 -51.93 -0.32 1.69 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -27.90 369.46 -8.90 -36.80 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -9.11 Total: 4.50 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.18 Total: -0.79 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.23 Total: -49.11 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.07 Total: -13.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.90 -8.90 -36.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072291844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.500 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds