Wall clock time and date at job start Tue Mar 31 2020 04:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46931 * 2 1 4 4 C 1.52995 * 109.46919 * 240.00406 * 2 1 3 5 5 C 1.50693 * 109.47569 * 59.99583 * 4 2 1 6 6 H 1.08006 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00325 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00020 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00245 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47136 * 90.00330 * 9 7 5 11 11 H 1.48507 * 109.47234 * 210.00083 * 9 7 5 12 12 H 1.48501 * 109.47259 * 330.00582 * 9 7 5 13 13 C 1.52998 * 109.47185 * 120.00218 * 2 1 3 14 14 N 1.46903 * 109.47149 * 299.99799 * 13 2 1 15 15 C 1.47224 * 111.00421 * 180.02562 * 14 13 2 16 16 C 1.52841 * 109.23566 * 155.00026 * 15 14 13 17 17 C 1.52665 * 110.39402 * 179.07923 * 16 15 14 18 18 C 1.53342 * 109.51840 * 75.32377 * 17 16 15 19 19 C 1.54503 * 107.51565 * 191.48421 * 17 16 15 20 20 N 1.44797 * 113.00688 * 310.80156 * 17 16 15 21 21 C 1.44802 * 120.28060 * 40.46189 * 20 17 16 22 22 C 1.53327 * 111.18409 * 83.04154 * 21 20 17 23 23 C 1.54492 * 108.19954 * 200.52566 * 21 20 17 24 24 C 1.52678 * 112.95436 * 319.43692 * 21 20 17 25 25 H 1.09001 * 109.46897 * 299.99748 * 1 2 3 26 26 H 1.08989 * 109.47014 * 59.99986 * 1 2 3 27 27 H 1.08997 * 109.46644 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47287 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47428 * 300.00096 * 3 2 1 30 30 H 1.09007 * 109.47037 * 59.99949 * 3 2 1 31 31 H 1.09004 * 109.46754 * 179.97438 * 4 2 1 32 32 H 1.09007 * 109.46934 * 299.99181 * 4 2 1 33 33 H 0.96999 * 120.00562 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.47150 * 180.02562 * 13 2 1 35 35 H 1.08997 * 109.47407 * 59.99735 * 13 2 1 36 36 H 1.00907 * 111.00159 * 303.96282 * 14 13 2 37 37 H 1.08704 * 108.94446 * 34.28639 * 15 14 13 38 38 H 1.09232 * 109.38175 * 58.59263 * 16 15 14 39 39 H 1.09246 * 109.36392 * 299.53726 * 16 15 14 40 40 H 1.09000 * 109.46562 * 60.00110 * 18 17 16 41 41 H 1.08994 * 109.46992 * 179.97438 * 18 17 16 42 42 H 1.08996 * 109.47437 * 299.99844 * 18 17 16 43 43 H 1.08994 * 109.46864 * 60.00359 * 19 17 16 44 44 H 1.09005 * 109.46503 * 179.97438 * 19 17 16 45 45 H 1.08992 * 109.47086 * 299.99612 * 19 17 16 46 46 H 1.00896 * 112.57769 * 176.85977 * 20 17 16 47 47 H 1.09004 * 109.46817 * 60.00264 * 22 21 20 48 48 H 1.09000 * 109.46994 * 179.97438 * 22 21 20 49 49 H 1.08997 * 109.47450 * 300.00278 * 22 21 20 50 50 H 1.09001 * 109.46909 * 59.99376 * 23 21 20 51 51 H 1.08997 * 109.47788 * 179.97438 * 23 21 20 52 52 H 1.09004 * 109.46963 * 300.00194 * 23 21 20 53 53 H 1.09233 * 109.44017 * 169.81632 * 24 21 20 54 54 H 1.09234 * 109.43974 * 288.98672 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7319 8 7 2.6273 -1.5508 -3.8527 9 14 1.2490 0.3995 -5.2571 10 1 2.2273 1.4412 -5.6608 11 1 1.0843 -0.5794 -6.3617 12 1 -0.0592 1.0370 -4.9615 13 6 2.0401 -0.7213 1.2492 14 7 1.5505 -0.0288 2.4487 15 6 2.0230 -0.6960 3.6730 16 6 2.0543 0.3160 4.8180 17 6 2.5197 -0.3545 6.1081 18 6 4.0348 -0.5832 6.0490 19 6 2.2513 0.6311 7.2673 20 7 1.8154 -1.5876 6.3909 21 6 1.5076 -2.5143 5.3218 22 6 2.7046 -3.4213 5.0129 23 6 0.3523 -3.4262 5.7913 24 6 1.0519 -1.8171 4.0422 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1301 -0.7207 -1.2495 32 1 1.6768 -1.7489 -1.2492 33 1 2.8622 -1.8818 -4.7337 34 1 3.1300 -0.7209 1.2494 35 1 1.6768 -1.7489 1.2492 36 1 1.8198 0.9436 2.4401 37 1 3.0170 -1.0982 3.4946 38 1 1.0540 0.7298 4.9635 39 1 2.7381 1.1293 4.5639 40 1 4.5425 0.3745 5.9341 41 1 4.3662 -1.0615 6.9706 42 1 4.2726 -1.2247 5.2005 43 1 1.1852 0.8524 7.3165 44 1 2.5726 0.1823 8.2074 45 1 2.8064 1.5533 7.0961 46 1 2.1623 -2.0511 7.2173 47 1 2.9670 -3.9924 5.9034 48 1 2.4429 -4.1063 4.2064 49 1 3.5547 -2.8103 4.7095 50 1 -0.5213 -2.8163 6.0218 51 1 0.1029 -4.1333 5.0003 52 1 0.6598 -3.9720 6.6834 53 1 1.0103 -2.5435 3.2274 54 1 0.0544 -1.3980 4.1920 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097095572.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:04 Heat of formation + Delta-G solvation = -32.625781 kcal Electronic energy + Delta-G solvation = -26037.919257 eV Core-core repulsion = 22814.965857 eV Total energy + Delta-G solvation = -3222.953400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 296.252 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.08611 -37.47056 -35.16518 -34.61529 -32.30265 -29.88534 -28.72984 -27.76277 -26.85329 -26.78828 -26.47526 -26.19016 -24.95019 -22.55549 -21.07472 -20.59585 -18.37047 -17.75186 -16.23678 -16.14426 -15.70122 -15.17303 -14.64200 -14.60693 -14.20433 -13.84527 -13.65044 -13.45549 -13.33482 -13.08945 -12.83163 -12.72800 -12.53169 -12.37268 -12.27943 -11.97702 -11.85972 -11.71326 -11.66206 -11.59594 -11.22130 -11.06974 -10.89679 -10.81720 -10.75578 -10.64682 -10.52129 -10.42640 -10.28732 -10.14564 -10.03309 -9.64636 -8.97556 -8.79256 -8.29895 -8.22364 -8.01905 -5.94427 -3.94414 3.34342 3.40960 3.44095 3.82712 4.27984 4.50854 4.62204 4.71286 4.82319 4.92078 4.96129 5.20690 5.31381 5.34945 5.39248 5.41397 5.44232 5.52938 5.58653 5.64140 5.66423 5.72521 5.76320 5.77849 5.80838 5.86429 5.94691 6.01497 6.02346 6.04656 6.05327 6.14619 6.20462 6.23021 6.31021 6.38676 6.45766 6.56476 6.70451 6.83226 6.86315 7.24061 7.28397 7.30092 7.45472 7.46938 7.48335 7.71511 7.76213 7.88652 8.06074 8.50788 9.11055 9.68298 11.17278 Molecular weight = 296.25amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.003171 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.907533 B = 8826.913722 C = 9199.662260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.072 3.928 14 N -0.683 5.683 15 C 0.087 3.913 16 C -0.110 4.110 17 C 0.151 3.849 18 C -0.182 4.182 19 C -0.141 4.141 20 N -0.718 5.718 21 C 0.147 3.853 22 C -0.181 4.181 23 C -0.140 4.140 24 C -0.094 4.094 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.011 0.989 32 H 0.014 0.986 33 H 0.258 0.742 34 H 0.020 0.980 35 H 0.064 0.936 36 H 0.337 0.663 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.353 0.647 47 H 0.050 0.950 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.060 0.940 51 H 0.057 0.943 52 H 0.048 0.952 53 H 0.066 0.934 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 0.423 22.975 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.056 4.056 14 N -0.315 5.315 15 C -0.023 4.023 16 C -0.148 4.148 17 C 0.060 3.940 18 C -0.241 4.241 19 C -0.199 4.199 20 N -0.354 5.354 21 C 0.056 3.944 22 C -0.241 4.241 23 C -0.198 4.198 24 C -0.132 4.132 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.177 0.823 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.079 0.921 51 H 0.076 0.924 52 H 0.068 0.932 53 H 0.085 0.915 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.091 0.273 22.661 22.689 hybrid contribution 1.631 0.173 -0.997 1.919 sum 0.540 0.446 21.664 21.676 Atomic orbital electron populations 1.21585 0.94987 1.00511 1.00124 1.20623 0.95863 0.94942 0.94428 1.21763 0.99592 0.96826 1.00381 1.19117 0.95804 0.95183 0.90241 1.21245 1.30681 1.11871 0.90622 0.92297 1.25017 0.95442 0.95113 0.99046 1.69967 1.37379 1.23217 1.23249 0.86669 0.79250 0.79414 0.83123 1.20849 1.21385 1.19892 1.22121 0.95975 0.98110 0.89444 1.60694 1.63759 1.06088 1.00932 1.21397 0.96261 0.94763 0.89866 1.21777 1.02383 0.97473 0.93161 1.20211 0.90126 0.88707 0.94941 1.22793 0.97689 1.02021 1.01606 1.22256 1.02088 0.98127 0.97430 1.54583 1.61692 1.09489 1.09591 1.20310 0.93687 0.90096 0.90297 1.22779 0.99506 1.00225 1.01566 1.22240 0.98236 0.98783 1.00579 1.21566 0.99737 0.97107 0.94834 0.93856 0.92791 0.94259 0.94223 0.91770 0.94800 0.97038 0.96744 0.93196 0.96201 0.91745 0.84328 0.94175 0.90532 0.91884 0.92342 0.92956 0.92482 0.92061 0.93070 0.92580 0.82304 0.93113 0.92089 0.92632 0.92087 0.92385 0.93241 0.91506 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 4 C 0.03 0.87 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.07 1.26 4.45 -3.82 -0.02 1.25 16 14 N -0.68 -9.90 5.51 -106.78 -0.59 -10.49 16 15 C 0.09 1.09 2.36 -67.70 -0.16 0.93 16 16 C -0.11 -1.17 3.93 -26.98 -0.11 -1.27 16 17 C 0.15 1.38 0.93 -131.94 -0.12 1.26 16 18 C -0.18 -1.62 8.23 37.33 0.31 -1.31 16 19 C -0.14 -1.13 8.52 37.95 0.32 -0.81 16 20 N -0.72 -6.52 4.80 -87.44 -0.42 -6.94 16 21 C 0.15 1.47 0.92 -131.94 -0.12 1.34 16 22 C -0.18 -1.80 8.29 37.33 0.31 -1.49 16 23 C -0.14 -1.29 8.52 37.94 0.32 -0.97 16 24 C -0.09 -1.14 4.18 -26.98 -0.11 -1.25 16 25 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 26 H 0.05 1.13 6.62 -51.94 -0.34 0.79 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 30 H 0.03 0.54 6.57 -51.92 -0.34 0.19 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 35 H 0.06 1.18 7.52 -51.93 -0.39 0.79 16 36 H 0.34 4.74 6.38 -39.29 -0.25 4.49 16 37 H 0.04 0.55 5.96 -52.09 -0.31 0.24 16 38 H 0.08 0.87 8.05 -51.80 -0.42 0.45 16 39 H 0.06 0.65 8.05 -51.79 -0.42 0.23 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.58 5.03 -51.93 -0.26 0.32 16 43 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.35 2.84 8.81 -39.29 -0.35 2.49 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 49 H 0.05 0.60 5.09 -51.93 -0.26 0.33 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 53 H 0.07 0.90 7.41 -51.80 -0.38 0.51 16 54 H 0.07 0.97 8.07 -51.80 -0.42 0.55 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -28.49 392.18 -9.38 -37.87 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -10.65 Total: 2.90 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 0.65 Total: -19.65 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.27 Total: -43.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.49 -9.38 -37.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097095572.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.247 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds