Wall clock time and date at job start Tue Mar 31 2020 04:02:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 109.47349 * 2 1
4 4 C 1.52998 * 109.47305 * 239.99746 * 2 1 3
5 5 C 1.52994 * 109.47292 * 300.00309 * 4 2 1
6 6 C 1.53003 * 109.47255 * 299.99919 * 5 4 2
7 7 C 1.52994 * 109.47132 * 59.99555 * 6 5 4
8 8 H 1.09003 * 109.47340 * 60.00670 * 7 6 5
9 9 N 1.46906 * 109.47113 * 180.02562 * 7 6 5
10 10 C 1.46901 * 110.99793 * 275.00325 * 9 7 6
11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 7
12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9
13 13 O 1.21278 * 119.99985 * 0.02562 * 12 11 10
14 14 N 1.34777 * 120.00161 * 179.97438 * 12 11 10
15 15 C 1.46505 * 119.99832 * 0.02562 * 14 12 11
16 16 C 1.46496 * 120.00271 * 179.97438 * 14 12 11
17 17 C 1.50705 * 109.47066 * 90.00086 * 16 14 12
18 18 H 1.08001 * 119.99987 * 0.02562 * 17 16 14
19 19 C 1.37872 * 120.00127 * 179.97438 * 17 16 14
20 20 N 1.31516 * 120.00037 * 180.02562 * 19 17 16
21 21 Si 1.86799 * 120.00065 * 0.02562 * 19 17 16
22 22 H 1.48497 * 109.47380 * 89.99525 * 21 19 17
23 23 H 1.48502 * 109.46914 * 210.00057 * 21 19 17
24 24 H 1.48507 * 109.46856 * 329.99469 * 21 19 17
25 25 C 1.52999 * 109.47281 * 120.00012 * 2 1 3
26 26 H 1.09002 * 109.47629 * 180.02562 * 25 2 1
27 27 C 1.52997 * 109.47259 * 300.00018 * 25 2 1
28 28 H 1.08998 * 109.46901 * 299.99886 * 1 2 3
29 29 H 1.09001 * 109.47247 * 60.00017 * 1 2 3
30 30 H 1.09003 * 109.46836 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46775 * 59.99947 * 4 2 1
32 32 H 1.08994 * 109.47694 * 179.97438 * 4 2 1
33 33 H 1.09004 * 109.47473 * 59.99619 * 5 4 2
34 34 H 1.09005 * 109.47834 * 179.97438 * 5 4 2
35 35 H 1.09003 * 109.46461 * 299.99686 * 6 5 4
36 36 H 1.08995 * 109.47249 * 180.02562 * 6 5 4
37 37 H 1.00899 * 110.99995 * 151.04723 * 9 7 6
38 38 H 1.09002 * 109.47401 * 59.99808 * 10 9 7
39 39 H 1.09001 * 109.46874 * 299.99821 * 10 9 7
40 40 H 1.09001 * 109.47194 * 299.99524 * 11 10 9
41 41 H 1.08992 * 109.47399 * 59.99697 * 11 10 9
42 42 H 1.09003 * 109.46862 * 89.99771 * 15 14 12
43 43 H 1.08996 * 109.47101 * 209.99896 * 15 14 12
44 44 H 1.09003 * 109.46885 * 329.99503 * 15 14 12
45 45 H 1.08998 * 109.47205 * 209.99950 * 16 14 12
46 46 H 1.08997 * 109.47416 * 330.00811 * 16 14 12
47 47 H 0.97001 * 119.99958 * 180.02562 * 20 19 17
48 48 H 1.09001 * 109.47300 * 179.97438 * 27 25 2
49 49 H 1.09003 * 109.47131 * 300.00229 * 27 25 2
50 50 H 1.09003 * 109.47374 * 59.99955 * 27 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 1.5300 -2.1637 -1.2492
6 6 2.0400 -2.8850 0.0001
7 6 1.5300 -2.1638 1.2493
8 1 0.4400 -2.1637 1.2493
9 7 2.0201 -2.8560 2.4487
10 6 1.1368 -3.9728 2.8098
11 6 1.6783 -4.6672 4.0611
12 6 0.7718 -5.8126 4.4319
13 8 -0.2103 -6.0504 3.7612
14 7 1.0530 -6.5734 5.5083
15 6 2.2397 -6.2865 6.3182
16 6 0.1716 -7.6864 5.8691
17 6 0.6368 -8.9409 5.1755
18 1 1.5028 -8.9119 4.5307
19 6 -0.0423 -10.1257 5.3648
20 7 0.3640 -11.2205 4.7599
21 14 -1.5397 -10.1759 6.4805
22 1 -2.7603 -9.8914 5.6841
23 1 -1.6531 -11.5224 7.0964
24 1 -1.3959 -9.1538 7.5482
25 6 2.0400 -0.7212 1.2492
26 1 3.1300 -0.7209 1.2495
27 6 1.5301 0.0000 2.4985
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.6767 -0.2075 -2.1392
32 1 3.1300 -0.7209 -1.2495
33 1 0.4400 -2.1638 -1.2492
34 1 1.8930 -2.6776 -2.1394
35 1 3.1300 -2.8850 0.0000
36 1 1.6770 -3.9128 -0.0002
37 1 2.1244 -2.2135 3.2197
38 1 1.0975 -4.6859 1.9863
39 1 0.1348 -3.5934 3.0101
40 1 2.6804 -5.0465 3.8612
41 1 1.7173 -3.9540 4.8843
42 1 1.9781 -5.5845 7.1100
43 1 2.6101 -7.2113 6.7602
44 1 3.0136 -5.8501 5.6868
45 1 0.1990 -7.8365 6.9483
46 1 -0.8482 -7.4574 5.5599
47 1 -0.1141 -12.0540 4.8928
48 1 1.8931 -0.5141 3.3885
49 1 1.8934 1.0277 2.4985
50 1 0.4400 0.0000 2.4985
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000097099560.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:02:45
Heat of formation + Delta-G solvation = -80.756568 kcal
Electronic energy + Delta-G solvation = -24744.743195 eV
Core-core repulsion = 21383.869594 eV
Total energy + Delta-G solvation = -3360.873602 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 296.221 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.94394 -40.52424 -36.90462 -36.41800 -34.72433 -33.74617 -32.80677 -30.77820
-29.42271 -28.06085 -27.31745 -26.47050 -25.01392 -23.29216 -22.27302 -22.05582
-19.99533 -19.27765 -19.16510 -17.93168 -17.39262 -16.99238 -16.68118 -16.10580
-16.03245 -15.80383 -15.40542 -15.00881 -14.79317 -14.54071 -14.34287 -14.08359
-13.73597 -13.71578 -13.64662 -13.37582 -13.27024 -13.15193 -12.88617 -12.84746
-12.61672 -12.50344 -12.41568 -12.18173 -12.16583 -12.04120 -11.91921 -11.76083
-11.55140 -11.18538 -10.97603 -10.84976 -10.77202 -10.64733 -9.41289 -9.37516
-8.35672 -6.41095 1.31225 1.35664 1.44247 1.79358 2.29161 2.30408
2.98564 3.14963 3.69652 3.78327 3.80481 3.97182 4.02974 4.13624
4.20771 4.37332 4.39988 4.44040 4.47684 4.49830 4.54151 4.60911
4.67184 4.69994 4.72531 4.79983 4.89724 4.92310 4.94102 4.95563
5.00213 5.05280 5.05735 5.10411 5.18676 5.20674 5.27096 5.32238
5.39638 5.42282 5.44544 5.51232 5.61541 5.65827 6.05406 6.22380
6.53839 6.60332 6.69976 7.19761 7.41614 8.81545
Molecular weight = 296.22amu
Principal moments of inertia in cm(-1)
A = 0.025814 B = 0.002795 C = 0.002703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1084.433015 B =10015.662679 C =10357.050650
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.081 4.081
3 H 0.084 0.916
4 C -0.111 4.111
5 C -0.120 4.120
6 C -0.108 4.108
7 C 0.093 3.907
8 H 0.035 0.965
9 N -0.682 5.682
10 C 0.086 3.914
11 C -0.118 4.118
12 C 0.495 3.505
13 O -0.600 6.600
14 N -0.608 5.608
15 C 0.076 3.924
16 C 0.222 3.778
17 C -0.538 4.538
18 H 0.026 0.974
19 C 0.009 3.991
20 N -0.947 5.947
21 Si 0.951 3.049
22 H -0.277 1.277
23 H -0.274 1.274
24 H -0.237 1.237
25 C -0.081 4.081
26 H 0.079 0.921
27 C -0.154 4.154
28 H 0.058 0.942
29 H 0.059 0.941
30 H 0.046 0.954
31 H 0.070 0.930
32 H 0.066 0.934
33 H 0.057 0.943
34 H 0.064 0.936
35 H 0.066 0.934
36 H 0.036 0.964
37 H 0.350 0.650
38 H 0.049 0.951
39 H 0.023 0.977
40 H 0.111 0.889
41 H 0.123 0.877
42 H 0.082 0.918
43 H 0.064 0.936
44 H 0.091 0.909
45 H 0.052 0.948
46 H 0.017 0.983
47 H 0.269 0.731
48 H 0.059 0.941
49 H 0.071 0.929
50 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.468 27.602 -4.208 28.451
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.100 4.100
3 H 0.102 0.898
4 C -0.148 4.148
5 C -0.158 4.158
6 C -0.146 4.146
7 C -0.017 4.017
8 H 0.053 0.947
9 N -0.316 5.316
10 C -0.044 4.044
11 C -0.157 4.157
12 C 0.284 3.716
13 O -0.482 6.482
14 N -0.339 5.339
15 C -0.065 4.065
16 C 0.099 3.901
17 C -0.576 4.576
18 H 0.045 0.955
19 C -0.189 4.189
20 N -0.587 5.587
21 Si 0.773 3.227
22 H -0.203 1.203
23 H -0.199 1.199
24 H -0.160 1.160
25 C -0.100 4.100
26 H 0.098 0.902
27 C -0.212 4.212
28 H 0.077 0.923
29 H 0.078 0.922
30 H 0.065 0.935
31 H 0.089 0.911
32 H 0.085 0.915
33 H 0.076 0.924
34 H 0.082 0.918
35 H 0.085 0.915
36 H 0.055 0.945
37 H 0.172 0.828
38 H 0.067 0.933
39 H 0.041 0.959
40 H 0.129 0.871
41 H 0.141 0.859
42 H 0.100 0.900
43 H 0.082 0.918
44 H 0.109 0.891
45 H 0.069 0.931
46 H 0.035 0.965
47 H 0.078 0.922
48 H 0.078 0.922
49 H 0.090 0.910
50 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 5.396 26.899 -4.864 27.863
hybrid contribution -1.461 -0.767 0.396 1.697
sum 3.935 26.132 -4.468 26.801
Atomic orbital electron populations
1.22009 0.95687 1.01472 1.01998 1.21098 0.95647 0.99454 0.93792
0.89781 1.21556 1.00811 0.94639 0.97837 1.21566 1.00652 0.96468
0.97136 1.21510 1.01147 0.97922 0.94048 1.21578 0.96675 0.93370
0.90050 0.94739 1.60486 1.50276 1.12723 1.08164 1.21442 0.93418
0.93380 0.96135 1.21534 0.99287 0.95164 0.99761 1.21403 0.86215
0.84316 0.79667 1.90631 1.31941 1.73093 1.52498 1.47990 1.27321
1.30274 1.28359 1.21995 0.86467 1.02210 0.95870 1.19334 0.90454
0.84296 0.95975 1.21582 1.13679 0.93824 1.28550 0.95517 1.25898
1.00758 0.94780 0.97471 1.70057 1.42574 1.00850 1.45184 0.85676
0.78618 0.78745 0.79659 1.20268 1.19863 1.15961 1.21230 1.00835
0.92292 0.95613 0.90246 1.21968 1.01179 1.01078 0.96948 0.92256
0.92188 0.93507 0.91129 0.91515 0.92392 0.91757 0.91481 0.94494
0.82849 0.93263 0.95889 0.87104 0.85880 0.89984 0.91751 0.89070
0.93058 0.96473 0.92231 0.92191 0.91016 0.92897
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.17 8.15 71.98 0.59 -1.58 16
2 C -0.08 -1.05 2.72 -10.79 -0.03 -1.08 16
3 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16
4 C -0.11 -1.50 5.45 30.59 0.17 -1.33 16
5 C -0.12 -2.10 5.65 30.59 0.17 -1.93 16
6 C -0.11 -2.32 5.42 30.59 0.17 -2.15 16
7 C 0.09 1.86 1.70 44.91 0.08 1.94 16
8 H 0.03 0.80 6.09 -2.39 -0.01 0.79 16
9 N -0.68 -14.62 6.31 -491.55 -3.10 -17.72 16
10 C 0.09 2.45 4.77 86.30 0.41 2.86 16
11 C -0.12 -3.22 4.51 29.85 0.13 -3.08 16
12 C 0.49 20.27 7.67 87.66 0.67 20.95 16
13 O -0.60 -30.91 15.56 -3.02 -0.05 -30.96 16
14 N -0.61 -24.92 2.86 -851.13 -2.43 -27.35 16
15 C 0.08 2.15 10.24 127.77 1.31 3.46 16
16 C 0.22 11.03 4.23 85.64 0.36 11.39 16
17 C -0.54 -32.42 9.94 25.60 0.25 -32.17 16
18 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16
19 C 0.01 0.53 5.47 84.65 0.46 0.99 16
20 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16
21 Si 0.95 45.15 27.47 68.60 1.88 47.03 16
22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16
24 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16
25 C -0.08 -1.18 2.16 -10.79 -0.02 -1.20 16
26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
27 C -0.15 -1.92 8.60 71.98 0.62 -1.30 16
28 H 0.06 0.79 6.43 -2.39 -0.02 0.77 16
29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
30 H 0.05 0.81 4.81 -2.39 -0.01 0.79 16
31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
33 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16
34 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16
35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
36 H 0.04 0.97 7.45 -2.39 -0.02 0.95 16
37 H 0.35 6.00 6.16 -89.69 -0.55 5.44 16
38 H 0.05 1.71 7.39 -2.39 -0.02 1.69 16
39 H 0.02 0.71 8.01 -2.39 -0.02 0.69 16
40 H 0.11 2.80 7.40 -2.39 -0.02 2.78 16
41 H 0.12 2.41 8.11 -2.39 -0.02 2.39 16
42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
43 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16
44 H 0.09 2.03 6.44 -2.39 -0.02 2.01 16
45 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16
46 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16
47 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16
48 H 0.06 0.70 6.21 -2.39 -0.01 0.69 16
49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
50 H 0.05 0.72 6.43 -2.39 -0.02 0.71 16
Total: -1.00 -77.54 372.66 2.24 -75.29
By element:
Atomic # 1 Polarization: 18.31 SS G_CDS: 0.30 Total: 18.60 kcal
Atomic # 6 Polarization: -9.58 SS G_CDS: 5.34 Total: -4.24 kcal
Atomic # 7 Polarization: -100.50 SS G_CDS: -5.23 Total: -105.73 kcal
Atomic # 8 Polarization: -30.91 SS G_CDS: -0.05 Total: -30.96 kcal
Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal
Total: -77.54 2.24 -75.29 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000097099560.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.463 kcal
(2) G-P(sol) polarization free energy of solvation -77.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.999 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.757 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds