Wall clock time and date at job start Tue Mar 31 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47513 * 2 1 4 4 C 1.50706 * 109.46965 * 119.99814 * 2 1 3 5 5 O 1.21281 * 120.00000 * 119.99986 * 4 2 1 6 6 N 1.34772 * 120.00049 * 299.99938 * 4 2 1 7 7 C 1.46510 * 120.00138 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00205 * 180.02562 * 6 4 2 9 9 C 1.50702 * 109.47053 * 90.00098 * 8 6 4 10 10 H 1.08002 * 120.00217 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99921 * 180.02562 * 9 8 6 12 12 N 1.31518 * 119.99867 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00318 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47073 * 89.99688 * 13 11 9 15 15 H 1.48494 * 109.47378 * 210.00329 * 13 11 9 16 16 H 1.48500 * 109.46732 * 330.00056 * 13 11 9 17 17 N 1.46898 * 109.47361 * 239.99513 * 2 1 3 18 18 C 1.48653 * 111.00257 * 180.12702 * 17 2 1 19 19 C 1.54668 * 104.64274 * 201.54492 * 18 17 2 20 20 C 1.53162 * 104.62467 * 23.67499 * 19 18 17 21 21 C 1.53397 * 111.39848 * 121.10395 * 20 19 18 22 22 C 1.54758 * 103.65205 * 121.15626 * 21 20 19 23 23 O 1.44529 * 104.85241 * 336.21423 * 22 21 20 24 24 C 1.44704 * 105.46847 * 39.78667 * 23 22 21 25 25 C 1.48828 * 110.99788 * 64.48814 * 17 2 1 26 26 H 1.09003 * 109.47340 * 300.00237 * 1 2 3 27 27 H 1.08999 * 109.47418 * 60.00303 * 1 2 3 28 28 H 1.09002 * 109.47513 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46610 * 89.99404 * 7 6 4 30 30 H 1.08991 * 109.47267 * 209.99757 * 7 6 4 31 31 H 1.09005 * 109.46611 * 329.99868 * 7 6 4 32 32 H 1.08998 * 109.47659 * 209.99781 * 8 6 4 33 33 H 1.09000 * 109.47169 * 330.00128 * 8 6 4 34 34 H 0.97004 * 119.99815 * 179.97438 * 12 11 9 35 35 H 1.08997 * 110.40799 * 82.75235 * 18 17 2 36 36 H 1.09002 * 110.50351 * 320.38160 * 18 17 2 37 37 H 1.08998 * 110.40541 * 264.89438 * 19 18 17 38 38 H 1.08995 * 110.41047 * 142.46066 * 19 18 17 39 39 H 1.09006 * 110.58868 * 239.69805 * 21 20 19 40 40 H 1.08995 * 110.59086 * 2.61040 * 21 20 19 41 41 H 1.08996 * 110.36623 * 95.06435 * 22 21 20 42 42 H 1.09002 * 110.36175 * 217.37680 * 22 21 20 43 43 H 1.08991 * 110.41836 * 201.80151 * 24 23 22 44 44 H 1.08995 * 110.41793 * 79.33124 * 24 23 22 45 45 H 1.09005 * 110.46483 * 39.38359 * 25 17 2 46 46 H 1.09006 * 110.46339 * 276.81238 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 0.8639 0.9410 2.5890 8 6 2.1954 -0.9401 3.6508 9 6 3.5227 -0.3560 4.0607 10 1 3.9589 0.4486 3.4872 11 6 4.1809 -0.8495 5.1672 12 7 5.3390 -0.3394 5.5252 13 14 3.4270 -2.2416 6.1587 14 1 3.8869 -3.5437 5.6127 15 1 3.8480 -2.1232 7.5777 16 1 1.9464 -2.1644 6.0736 17 7 2.0196 -0.6926 -1.1993 18 6 3.5056 -0.7151 -1.2322 19 6 3.8605 -0.9397 -2.7207 20 6 2.6353 -0.4376 -3.4904 21 6 3.0076 0.6908 -4.4606 22 6 2.5780 0.1413 -5.8421 23 8 2.5807 -1.2956 -5.6864 24 6 2.0349 -1.5420 -4.3691 25 6 1.6332 0.0421 -2.4346 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.1839 0.6426 2.6224 30 1 1.1216 1.4665 3.5084 31 1 1.0271 1.5997 1.7359 32 1 1.4775 -0.8149 4.4614 33 1 2.3169 -2.0014 3.4338 34 1 5.8019 -0.6863 6.3039 35 1 3.8869 -1.5344 -0.6228 36 1 3.9096 0.2358 -0.8846 37 1 4.0242 -1.9994 -2.9166 38 1 4.7434 -0.3612 -2.9925 39 1 2.4557 1.5999 -4.2212 40 1 4.0814 0.8763 -4.4388 41 1 1.5783 0.4935 -6.0963 42 1 3.2929 0.4410 -6.6084 43 1 2.3413 -2.5237 -4.0081 44 1 0.9479 -1.4647 -4.3873 45 1 1.7251 1.1177 -2.2828 46 1 0.6161 -0.2164 -2.7294 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153413099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:23 Heat of formation + Delta-G solvation = -55.778945 kcal Electronic energy + Delta-G solvation = -25318.809362 eV Core-core repulsion = 21823.185777 eV Total energy + Delta-G solvation = -3495.623585 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.70138 -39.36083 -37.29534 -34.97959 -33.84122 -32.49815 -31.09999 -29.39136 -29.10041 -27.92593 -26.30856 -25.32102 -23.59344 -22.81194 -22.01018 -20.96864 -19.59401 -18.43284 -16.97687 -16.72737 -16.42100 -16.07558 -15.63860 -15.39322 -14.82196 -14.77714 -14.59042 -14.19349 -13.73979 -13.39043 -13.29185 -12.95317 -12.69648 -12.43938 -12.41750 -12.24149 -12.06476 -11.87009 -11.66624 -11.62722 -11.46088 -11.24195 -11.06769 -10.96454 -10.85268 -10.72857 -10.52495 -10.47234 -10.14726 -9.84896 -9.55741 -8.91719 -8.60277 -8.29796 -7.70205 -6.10339 -4.09232 3.28558 3.34217 3.34504 3.36717 3.58936 3.76251 4.07009 4.35854 4.38430 4.39999 4.56580 4.80271 4.87757 5.00594 5.03534 5.16954 5.19883 5.24592 5.27532 5.43356 5.44501 5.45179 5.51584 5.57323 5.61421 5.66713 5.68869 5.77788 5.80813 5.83977 5.85498 5.91301 6.04410 6.15075 6.25525 6.43072 6.59805 6.66882 6.90115 6.93788 7.05042 7.34179 7.59656 8.24168 8.45468 8.91211 9.00021 9.50106 11.03025 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027092 B = 0.003554 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.252725 B = 7876.469628 C = 8287.764034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 H 0.062 0.938 4 C 0.514 3.486 5 O -0.524 6.524 6 N -0.598 5.598 7 C 0.082 3.918 8 C 0.217 3.783 9 C -0.529 4.529 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.487 5.487 18 C 0.032 3.968 19 C -0.108 4.108 20 C -0.097 4.097 21 C -0.145 4.145 22 C 0.045 3.955 23 O -0.379 6.379 24 C 0.064 3.936 25 C 0.046 3.954 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.109 0.891 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.465 4.521 -18.426 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 H 0.080 0.920 4 C 0.299 3.701 5 O -0.399 6.399 6 N -0.330 5.330 7 C -0.062 4.062 8 C 0.096 3.904 9 C -0.567 4.567 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.211 5.211 18 C -0.096 4.096 19 C -0.146 4.146 20 C -0.098 4.098 21 C -0.182 4.182 22 C -0.032 4.032 23 O -0.298 6.298 24 C -0.012 4.012 25 C -0.082 4.082 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.107 3.275 -18.436 21.278 hybrid contribution 0.023 0.581 0.895 1.067 sum -10.084 3.855 -17.541 20.597 Atomic orbital electron populations 1.22018 0.92548 1.03514 1.02732 1.21791 0.97129 0.96158 0.90712 0.92039 1.20046 0.80910 0.85168 0.83945 1.90626 1.37141 1.26350 1.85829 1.47781 1.50195 1.28410 1.06655 1.21812 0.93624 0.87999 1.02785 1.19650 0.95232 0.93739 0.81738 1.21321 1.03143 1.20261 1.12021 0.90914 1.24861 0.94626 0.96481 0.97051 1.69900 1.14821 1.42329 1.26582 0.86834 0.80034 0.83263 0.79468 1.19864 1.21086 1.19059 1.65343 1.09917 1.46138 0.99700 1.23363 0.87406 1.02457 0.96342 1.22408 0.95864 1.02042 0.94315 1.21897 0.96660 0.95596 0.95645 1.23048 1.02617 0.98066 0.94515 1.23448 1.00767 0.81642 0.97308 1.89168 1.84606 1.21773 1.34262 1.23460 0.97382 0.99009 0.81357 1.23138 0.98756 0.96253 0.90040 0.90490 0.92202 0.91350 0.93262 0.90644 0.92225 0.95259 0.94510 0.92556 0.87286 0.94290 0.90521 0.91136 0.90385 0.90231 0.92438 0.89342 0.88483 0.92085 0.93510 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.79 37.15 0.33 -1.44 16 2 C 0.05 0.82 1.44 -68.87 -0.10 0.72 16 3 H 0.06 0.88 7.24 -51.93 -0.38 0.50 16 4 C 0.51 10.42 6.81 -10.98 -0.07 10.35 16 5 O -0.52 -12.73 13.65 5.56 0.08 -12.65 16 6 N -0.60 -12.20 2.86 -182.95 -0.52 -12.73 16 7 C 0.08 1.22 8.80 59.85 0.53 1.75 16 8 C 0.22 5.30 4.23 -5.19 -0.02 5.28 16 9 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 10 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 13 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 14 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 17 N -0.49 -7.10 5.00 -223.62 -1.12 -8.22 16 18 C 0.03 0.49 5.52 -1.98 -0.01 0.48 16 19 C -0.11 -1.33 6.33 -25.77 -0.16 -1.49 16 20 C -0.10 -1.02 0.97 -153.89 -0.15 -1.17 16 21 C -0.14 -1.24 6.39 -25.60 -0.16 -1.41 16 22 C 0.05 0.39 7.66 38.08 0.29 0.68 16 23 O -0.38 -4.39 11.66 -35.23 -0.41 -4.80 16 24 C 0.06 0.69 6.77 37.35 0.25 0.94 16 25 C 0.05 0.50 4.61 -2.62 -0.01 0.49 16 26 H 0.08 0.82 4.53 -51.93 -0.24 0.59 16 27 H 0.06 0.57 7.09 -51.93 -0.37 0.20 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 32 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.11 2.08 6.33 -51.93 -0.33 1.75 16 36 H 0.04 0.62 7.97 -51.93 -0.41 0.21 16 37 H 0.08 0.96 7.32 -51.93 -0.38 0.58 16 38 H 0.07 0.79 7.20 -51.93 -0.37 0.42 16 39 H 0.08 0.58 7.44 -51.93 -0.39 0.19 16 40 H 0.08 0.68 7.21 -51.93 -0.37 0.30 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 1.08 7.41 -51.93 -0.38 0.70 16 44 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 45 H 0.05 0.48 7.32 -51.93 -0.38 0.10 16 46 H 0.08 0.82 7.05 -51.93 -0.37 0.45 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -33.94 346.47 -7.82 -41.76 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.43 Total: -0.29 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 0.26 Total: 1.66 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.87 Total: -47.83 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.33 Total: -17.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.94 -7.82 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153413099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.020 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds