Wall clock time and date at job start Tue Mar 31 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47513 * 2 1 4 4 C 1.50706 * 109.46965 * 119.99814 * 2 1 3 5 5 O 1.21281 * 120.00000 * 119.99986 * 4 2 1 6 6 N 1.34772 * 120.00049 * 299.99938 * 4 2 1 7 7 C 1.46510 * 120.00138 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00205 * 180.02562 * 6 4 2 9 9 C 1.50702 * 109.47053 * 90.00098 * 8 6 4 10 10 H 1.08002 * 120.00217 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99921 * 180.02562 * 9 8 6 12 12 N 1.31518 * 119.99867 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00318 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47073 * 89.99688 * 13 11 9 15 15 H 1.48494 * 109.47378 * 210.00329 * 13 11 9 16 16 H 1.48500 * 109.46732 * 330.00056 * 13 11 9 17 17 N 1.46898 * 109.47361 * 239.99513 * 2 1 3 18 18 C 1.48653 * 111.00257 * 180.12702 * 17 2 1 19 19 C 1.54668 * 104.64274 * 201.54492 * 18 17 2 20 20 C 1.53162 * 104.62467 * 23.67499 * 19 18 17 21 21 C 1.53397 * 111.39848 * 121.10395 * 20 19 18 22 22 C 1.54758 * 103.65205 * 121.15626 * 21 20 19 23 23 O 1.44529 * 104.85241 * 336.21423 * 22 21 20 24 24 C 1.44704 * 105.46847 * 39.78667 * 23 22 21 25 25 C 1.48828 * 110.99788 * 64.48814 * 17 2 1 26 26 H 1.09003 * 109.47340 * 300.00237 * 1 2 3 27 27 H 1.08999 * 109.47418 * 60.00303 * 1 2 3 28 28 H 1.09002 * 109.47513 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46610 * 89.99404 * 7 6 4 30 30 H 1.08991 * 109.47267 * 209.99757 * 7 6 4 31 31 H 1.09005 * 109.46611 * 329.99868 * 7 6 4 32 32 H 1.08998 * 109.47659 * 209.99781 * 8 6 4 33 33 H 1.09000 * 109.47169 * 330.00128 * 8 6 4 34 34 H 0.97004 * 119.99815 * 179.97438 * 12 11 9 35 35 H 1.08997 * 110.40799 * 82.75235 * 18 17 2 36 36 H 1.09002 * 110.50351 * 320.38160 * 18 17 2 37 37 H 1.08998 * 110.40541 * 264.89438 * 19 18 17 38 38 H 1.08995 * 110.41047 * 142.46066 * 19 18 17 39 39 H 1.09006 * 110.58868 * 239.69805 * 21 20 19 40 40 H 1.08995 * 110.59086 * 2.61040 * 21 20 19 41 41 H 1.08996 * 110.36623 * 95.06435 * 22 21 20 42 42 H 1.09002 * 110.36175 * 217.37680 * 22 21 20 43 43 H 1.08991 * 110.41836 * 201.80151 * 24 23 22 44 44 H 1.08995 * 110.41793 * 79.33124 * 24 23 22 45 45 H 1.09005 * 110.46483 * 39.38359 * 25 17 2 46 46 H 1.09006 * 110.46339 * 276.81238 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 0.8639 0.9410 2.5890 8 6 2.1954 -0.9401 3.6508 9 6 3.5227 -0.3560 4.0607 10 1 3.9589 0.4486 3.4872 11 6 4.1809 -0.8495 5.1672 12 7 5.3390 -0.3394 5.5252 13 14 3.4270 -2.2416 6.1587 14 1 3.8869 -3.5437 5.6127 15 1 3.8480 -2.1232 7.5777 16 1 1.9464 -2.1644 6.0736 17 7 2.0196 -0.6926 -1.1993 18 6 3.5056 -0.7151 -1.2322 19 6 3.8605 -0.9397 -2.7207 20 6 2.6353 -0.4376 -3.4904 21 6 3.0076 0.6908 -4.4606 22 6 2.5780 0.1413 -5.8421 23 8 2.5807 -1.2956 -5.6864 24 6 2.0349 -1.5420 -4.3691 25 6 1.6332 0.0421 -2.4346 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.1839 0.6426 2.6224 30 1 1.1216 1.4665 3.5084 31 1 1.0271 1.5997 1.7359 32 1 1.4775 -0.8149 4.4614 33 1 2.3169 -2.0014 3.4338 34 1 5.8019 -0.6863 6.3039 35 1 3.8869 -1.5344 -0.6228 36 1 3.9096 0.2358 -0.8846 37 1 4.0242 -1.9994 -2.9166 38 1 4.7434 -0.3612 -2.9925 39 1 2.4557 1.5999 -4.2212 40 1 4.0814 0.8763 -4.4388 41 1 1.5783 0.4935 -6.0963 42 1 3.2929 0.4410 -6.6084 43 1 2.3413 -2.5237 -4.0081 44 1 0.9479 -1.4647 -4.3873 45 1 1.7251 1.1177 -2.2828 46 1 0.6161 -0.2164 -2.7294 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153413099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:23 Heat of formation + Delta-G solvation = -81.798936 kcal Electronic energy + Delta-G solvation = -25319.937673 eV Core-core repulsion = 21823.185777 eV Total energy + Delta-G solvation = -3496.751897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71838 -40.66794 -38.39120 -36.65282 -35.14484 -34.41692 -32.10283 -30.68179 -30.10447 -29.34487 -27.66438 -26.36028 -25.06152 -23.85982 -23.09162 -22.33523 -20.50540 -19.87086 -19.15831 -18.09385 -17.51513 -16.99096 -16.84526 -16.50780 -16.26254 -16.04185 -15.72575 -15.50869 -15.07414 -14.84831 -14.42144 -14.29258 -13.93166 -13.70365 -13.61980 -13.55588 -13.41624 -13.02483 -12.95094 -12.74138 -12.71099 -12.46869 -12.39139 -12.23410 -12.06711 -11.96800 -11.81896 -11.76529 -11.57371 -11.44838 -10.85321 -10.61634 -10.44370 -9.45887 -9.37292 -8.36382 -6.41537 1.31097 1.35592 1.43823 1.80363 2.20292 2.29251 2.94700 2.98265 3.02758 3.45403 3.52466 3.59500 3.77441 4.04051 4.05705 4.13269 4.18941 4.21030 4.30737 4.38516 4.56332 4.60142 4.66578 4.69914 4.72302 4.78144 4.81454 4.83828 4.86083 4.89096 4.92893 4.95927 4.97508 5.00366 5.11520 5.13974 5.18210 5.31220 5.43995 5.60818 5.80572 5.85699 5.96584 6.22474 6.59327 6.70711 7.19769 7.44464 8.80610 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027092 B = 0.003554 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.252725 B = 7876.469628 C = 8287.764034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 H 0.074 0.926 4 C 0.499 3.501 5 O -0.577 6.577 6 N -0.607 5.607 7 C 0.074 3.926 8 C 0.226 3.774 9 C -0.536 4.536 10 H 0.026 0.974 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.949 3.051 14 H -0.278 1.278 15 H -0.274 1.274 16 H -0.237 1.237 17 N -0.502 5.502 18 C 0.035 3.965 19 C -0.103 4.103 20 C -0.093 4.093 21 C -0.140 4.140 22 C 0.042 3.958 23 O -0.403 6.403 24 C 0.065 3.935 25 C 0.050 3.950 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.016 0.984 34 H 0.269 0.731 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.677 5.629 -19.676 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.048 4.048 3 H 0.092 0.908 4 C 0.288 3.712 5 O -0.457 6.457 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.103 3.897 9 C -0.575 4.575 10 H 0.044 0.956 11 C -0.187 4.187 12 N -0.586 5.586 13 Si 0.771 3.229 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.160 1.160 17 N -0.227 5.227 18 C -0.094 4.094 19 C -0.141 4.141 20 C -0.094 4.094 21 C -0.177 4.177 22 C -0.034 4.034 23 O -0.323 6.323 24 C -0.012 4.012 25 C -0.077 4.077 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.367 4.434 -19.707 24.222 hybrid contribution 1.107 0.290 1.224 1.676 sum -12.260 4.724 -18.483 22.676 Atomic orbital electron populations 1.22029 0.89311 1.03515 1.05134 1.21785 0.99378 0.95487 0.88155 0.90814 1.21159 0.79897 0.84806 0.85379 1.90607 1.39391 1.28944 1.86748 1.47905 1.50634 1.29734 1.05639 1.22154 0.94594 0.86390 1.03609 1.19302 0.93610 0.92698 0.84074 1.21554 1.05161 1.19186 1.11558 0.95564 1.25862 0.95031 0.99400 0.98435 1.70052 1.16632 1.44309 1.27572 0.85700 0.80750 0.78668 0.77735 1.20386 1.19902 1.15978 1.65302 1.08776 1.47607 1.01019 1.23139 0.88672 0.99881 0.97659 1.22359 0.97480 1.01815 0.92432 1.21863 0.95403 0.96421 0.95739 1.23037 1.02920 0.97922 0.93851 1.23646 1.02219 0.80040 0.97517 1.89149 1.84882 1.23799 1.34435 1.23445 0.98171 0.98340 0.81206 1.23258 0.99726 0.96810 0.87902 0.89038 0.88821 0.92534 0.89493 0.91614 0.89509 0.93074 0.96597 0.92254 0.91997 0.95486 0.91510 0.90259 0.88363 0.90367 0.90661 0.88204 0.89967 0.90519 0.91802 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.79 71.98 0.63 -2.18 16 2 C 0.06 1.82 1.44 44.17 0.06 1.88 16 3 H 0.07 1.93 7.24 -2.39 -0.02 1.91 16 4 C 0.50 20.54 6.81 87.66 0.60 21.14 16 5 O -0.58 -29.61 13.65 -3.03 -0.04 -29.65 16 6 N -0.61 -24.63 2.86 -851.13 -2.43 -27.06 16 7 C 0.07 2.05 8.80 127.77 1.12 3.17 16 8 C 0.23 11.10 4.23 85.63 0.36 11.46 16 9 C -0.54 -31.90 9.94 25.60 0.25 -31.64 16 10 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 11 C 0.01 0.64 5.47 84.65 0.46 1.10 16 12 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 13 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 14 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 17 N -0.50 -14.23 5.00 -861.39 -4.30 -18.54 16 18 C 0.03 1.12 5.52 86.53 0.48 1.60 16 19 C -0.10 -2.56 6.33 31.22 0.20 -2.36 16 20 C -0.09 -1.78 0.97 -51.78 -0.05 -1.83 16 21 C -0.14 -1.98 6.39 31.33 0.20 -1.78 16 22 C 0.04 0.59 7.66 72.58 0.56 1.15 16 23 O -0.40 -8.62 11.66 -148.98 -1.74 -10.36 16 24 C 0.06 1.27 6.77 72.11 0.49 1.76 16 25 C 0.05 0.94 4.61 86.02 0.40 1.33 16 26 H 0.09 1.53 4.53 -2.39 -0.01 1.52 16 27 H 0.09 1.26 7.09 -2.39 -0.02 1.24 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.78 6.95 -2.39 -0.02 1.76 16 30 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 31 H 0.09 1.91 6.01 -2.38 -0.01 1.89 16 32 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 33 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.06 2.59 6.33 -2.39 -0.02 2.58 16 36 H 0.03 0.91 7.97 -2.39 -0.02 0.89 16 37 H 0.07 1.77 7.32 -2.39 -0.02 1.75 16 38 H 0.08 1.79 7.20 -2.39 -0.02 1.77 16 39 H 0.10 1.03 7.44 -2.38 -0.02 1.01 16 40 H 0.08 1.15 7.21 -2.39 -0.02 1.13 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.83 7.41 -2.39 -0.02 1.81 16 44 H 0.08 1.26 7.46 -2.39 -0.02 1.24 16 45 H 0.06 1.02 7.32 -2.38 -0.02 1.00 16 46 H 0.10 1.56 7.05 -2.38 -0.02 1.55 16 Total: -1.00 -79.88 346.47 0.34 -79.54 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.91 Total: 14.47 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.76 Total: 4.80 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -6.44 Total: -105.61 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.78 Total: -40.01 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -79.88 0.34 -79.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153413099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.261 kcal (2) G-P(sol) polarization free energy of solvation -79.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds