Wall clock time and date at job start Tue Mar 31 2020 04:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37910 * 119.93522 * 2 1 4 4 C 1.39649 * 119.86322 * 179.97438 * 3 2 1 5 5 C 1.47682 * 120.14342 * 179.97438 * 4 3 2 6 6 O 1.21599 * 119.99947 * 173.74219 * 5 4 3 7 7 N 1.34774 * 120.00201 * 353.75107 * 5 4 3 8 8 C 1.36880 * 120.00255 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99654 * 359.97438 * 8 7 5 10 10 C 1.39039 * 119.99599 * 179.97438 * 8 7 5 11 11 N 1.31370 * 119.99597 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00617 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47143 * 89.99764 * 12 10 8 14 14 H 1.48503 * 109.47349 * 210.00025 * 12 10 8 15 15 H 1.48505 * 109.46926 * 329.99688 * 12 10 8 16 16 C 1.39698 * 119.71708 * 0.02562 * 4 3 2 17 17 C 1.50701 * 120.07310 * 180.02562 * 16 4 3 18 18 C 1.37865 * 119.85826 * 359.97438 * 16 4 3 19 19 C 1.38473 * 119.93050 * 179.72531 * 2 1 3 20 20 Br 1.89102 * 119.85372 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.47285 * 89.99618 * 1 2 3 22 22 H 1.08999 * 109.47688 * 209.99954 * 1 2 3 23 23 H 1.09005 * 109.47235 * 330.00128 * 1 2 3 24 24 H 1.08008 * 120.06608 * 359.95562 * 3 2 1 25 25 H 0.97004 * 119.99564 * 359.97438 * 7 5 4 26 26 H 0.97003 * 120.00051 * 180.02562 * 11 10 8 27 27 H 1.09005 * 109.46769 * 83.39934 * 17 16 4 28 28 H 1.09001 * 109.47546 * 203.40508 * 17 16 4 29 29 H 1.09002 * 109.47143 * 323.40593 * 17 16 4 30 30 H 1.08000 * 119.93451 * 179.97438 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1951 1.1951 0.0000 4 6 3.5916 1.1934 0.0005 5 6 4.3348 2.4695 0.0000 6 8 5.5453 2.4682 0.1152 7 7 3.6714 3.6357 -0.1281 8 6 4.3602 4.8186 -0.1281 9 1 5.4352 4.8174 -0.0251 10 6 3.6757 6.0215 -0.2608 11 7 4.3368 7.1568 -0.2603 12 14 1.8164 6.0235 -0.4398 13 1 1.1898 6.1013 0.9043 14 1 1.3982 7.1960 -1.2495 15 1 1.3829 4.7747 -1.1165 16 6 4.2826 -0.0208 0.0005 17 6 5.7896 -0.0320 0.0017 18 6 3.5829 -1.2087 0.0005 19 6 2.1978 -1.2000 0.0058 20 35 1.2462 -2.8341 0.0129 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6551 2.1305 -0.0007 25 1 2.7058 3.6367 -0.2203 26 1 3.8593 7.9961 -0.3525 27 1 6.1529 0.0829 1.0230 28 1 6.1462 -0.9776 -0.4067 29 1 6.1595 0.7906 -0.6103 30 1 4.1159 -2.1480 0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160277354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:23 Heat of formation + Delta-G solvation = -13.534889 kcal Electronic energy + Delta-G solvation = -15986.592352 eV Core-core repulsion = 13213.864139 eV Total energy + Delta-G solvation = -2772.728212 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 297.011 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.86934 -37.80089 -34.58480 -33.44346 -32.37068 -31.63839 -29.53457 -28.92896 -25.50754 -24.52755 -22.93135 -21.00355 -19.52754 -18.40254 -16.52247 -15.72632 -15.12431 -15.03451 -14.45348 -14.26282 -13.65222 -13.58203 -12.86623 -12.75183 -12.70291 -12.61484 -12.24511 -11.79689 -11.55535 -11.47884 -11.33217 -11.06775 -10.73348 -10.60188 -10.14830 -10.12518 -9.75103 -8.68592 -8.48831 -8.41609 -8.24929 -6.53783 -3.96421 0.93815 1.41071 1.63131 2.90888 2.95069 3.03799 3.31507 3.92761 4.20898 4.42762 4.77422 4.81625 5.13289 5.18485 5.26730 5.54035 5.57439 5.58674 5.69150 5.83214 6.03702 6.09420 6.23791 6.24937 6.42066 6.53137 6.84865 7.02344 7.36603 7.97142 8.39444 8.74655 9.20951 9.66443 10.57614 Molecular weight = 297.01amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.004745 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.853218 B = 5899.794304 C = 6929.911511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 C -0.102 4.102 4 C -0.080 4.080 5 C 0.471 3.529 6 O -0.570 6.570 7 N -0.566 5.566 8 C -0.298 4.298 9 H 0.126 0.874 10 C 0.044 3.956 11 N -0.862 5.862 12 Si 0.876 3.124 13 H -0.266 1.266 14 H -0.271 1.271 15 H -0.267 1.267 16 C -0.039 4.039 17 C -0.114 4.114 18 C -0.096 4.096 19 C -0.088 4.088 20 Br -0.061 7.061 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.128 0.872 25 H 0.372 0.628 26 H 0.278 0.722 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -17.851 0.003 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.071 4.071 3 C -0.122 4.122 4 C -0.084 4.084 5 C 0.260 3.740 6 O -0.455 6.455 7 N -0.203 5.203 8 C -0.427 4.427 9 H 0.143 0.857 10 C -0.161 4.161 11 N -0.500 5.500 12 Si 0.701 3.299 13 H -0.191 1.191 14 H -0.196 1.196 15 H -0.192 1.192 16 C -0.041 4.041 17 C -0.171 4.171 18 C -0.116 4.116 19 C -0.168 4.168 20 Br 0.024 6.976 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.146 0.854 25 H 0.206 0.794 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.312 -18.153 0.068 20.402 hybrid contribution -1.362 0.603 -0.151 1.497 sum -10.674 -17.550 -0.083 20.541 Atomic orbital electron populations 1.20968 0.90460 1.03519 1.02980 1.19580 0.96361 0.91320 0.99809 1.21168 0.93363 0.97246 1.00473 1.20327 0.93068 0.94921 1.00099 1.17480 0.87523 0.82671 0.86307 1.90591 1.13187 1.86090 1.55650 1.42254 1.08422 1.06390 1.63194 1.19562 0.95800 0.80951 1.46345 0.85674 1.25128 0.98895 0.94959 0.97137 1.69596 1.36411 0.97716 1.46302 0.86712 0.84854 0.78929 0.79387 1.19092 1.19606 1.19192 1.19973 0.97196 0.90692 0.96260 1.21036 0.89527 1.02618 1.03877 1.20888 0.91587 0.98387 1.00714 1.21666 0.94457 0.90502 1.10190 1.96597 1.75564 1.27671 1.97751 0.90632 0.90651 0.91039 0.85433 0.79422 0.91103 0.90863 0.93233 0.87805 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.55 36.00 0.34 -1.03 16 2 C -0.07 -0.98 5.88 -104.66 -0.61 -1.59 16 3 C -0.10 -1.66 9.17 -39.18 -0.36 -2.02 16 4 C -0.08 -1.51 5.87 -104.97 -0.62 -2.13 16 5 C 0.47 10.88 7.65 -12.40 -0.09 10.78 16 6 O -0.57 -14.73 12.92 5.28 0.07 -14.66 16 7 N -0.57 -13.39 5.03 -11.89 -0.06 -13.45 16 8 C -0.30 -8.14 10.16 -15.00 -0.15 -8.29 16 9 H 0.13 3.87 7.38 -52.49 -0.39 3.48 16 10 C 0.04 1.17 5.50 -17.45 -0.10 1.07 16 11 N -0.86 -24.04 13.95 55.50 0.77 -23.27 16 12 Si 0.88 18.52 27.74 -169.99 -4.71 13.80 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.27 -5.15 6.52 56.52 0.37 -4.79 16 16 C -0.04 -0.66 5.91 -104.21 -0.62 -1.27 16 17 C -0.11 -1.88 8.73 36.01 0.31 -1.57 16 18 C -0.10 -1.38 9.40 -39.62 -0.37 -1.76 16 19 C -0.09 -1.23 6.23 -39.39 -0.25 -1.48 16 20 Br -0.06 -0.70 31.75 -68.01 -2.16 -2.86 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.07 0.78 6.62 -51.93 -0.34 0.44 16 23 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 24 H 0.13 1.94 6.45 -52.48 -0.34 1.60 16 25 H 0.37 7.77 3.83 -40.82 -0.16 7.62 16 26 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.65 8.04 -51.93 -0.42 0.24 16 29 H 0.10 2.01 5.85 -51.93 -0.30 1.70 16 30 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 275.08 15.07 4.15 4.15 Total: -1.00 -29.00 275.08 -7.26 -36.26 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -2.80 Total: 9.30 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.51 Total: -9.27 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.71 Total: -36.72 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.07 Total: -14.66 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.71 Total: 13.80 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.16 Total: -2.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.00 -7.26 -36.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160277354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.728 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds