Wall clock time and date at job start Tue Mar 31 2020 04:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37910 * 119.93522 * 2 1 4 4 C 1.39649 * 119.86322 * 179.97438 * 3 2 1 5 5 C 1.47682 * 120.14342 * 179.97438 * 4 3 2 6 6 O 1.21599 * 119.99947 * 173.74219 * 5 4 3 7 7 N 1.34774 * 120.00201 * 353.75107 * 5 4 3 8 8 C 1.36880 * 120.00255 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99654 * 359.97438 * 8 7 5 10 10 C 1.39039 * 119.99599 * 179.97438 * 8 7 5 11 11 N 1.31370 * 119.99597 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00617 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47143 * 89.99764 * 12 10 8 14 14 H 1.48503 * 109.47349 * 210.00025 * 12 10 8 15 15 H 1.48505 * 109.46926 * 329.99688 * 12 10 8 16 16 C 1.39698 * 119.71708 * 0.02562 * 4 3 2 17 17 C 1.50701 * 120.07310 * 180.02562 * 16 4 3 18 18 C 1.37865 * 119.85826 * 359.97438 * 16 4 3 19 19 C 1.38473 * 119.93050 * 179.72531 * 2 1 3 20 20 Br 1.89102 * 119.85372 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.47285 * 89.99618 * 1 2 3 22 22 H 1.08999 * 109.47688 * 209.99954 * 1 2 3 23 23 H 1.09005 * 109.47235 * 330.00128 * 1 2 3 24 24 H 1.08008 * 120.06608 * 359.95562 * 3 2 1 25 25 H 0.97004 * 119.99564 * 359.97438 * 7 5 4 26 26 H 0.97003 * 120.00051 * 180.02562 * 11 10 8 27 27 H 1.09005 * 109.46769 * 83.39934 * 17 16 4 28 28 H 1.09001 * 109.47546 * 203.40508 * 17 16 4 29 29 H 1.09002 * 109.47143 * 323.40593 * 17 16 4 30 30 H 1.08000 * 119.93451 * 179.97438 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1951 1.1951 0.0000 4 6 3.5916 1.1934 0.0005 5 6 4.3348 2.4695 0.0000 6 8 5.5453 2.4682 0.1152 7 7 3.6714 3.6357 -0.1281 8 6 4.3602 4.8186 -0.1281 9 1 5.4352 4.8174 -0.0251 10 6 3.6757 6.0215 -0.2608 11 7 4.3368 7.1568 -0.2603 12 14 1.8164 6.0235 -0.4398 13 1 1.1898 6.1013 0.9043 14 1 1.3982 7.1960 -1.2495 15 1 1.3829 4.7747 -1.1165 16 6 4.2826 -0.0208 0.0005 17 6 5.7896 -0.0320 0.0017 18 6 3.5829 -1.2087 0.0005 19 6 2.1978 -1.2000 0.0058 20 35 1.2462 -2.8341 0.0129 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6551 2.1305 -0.0007 25 1 2.7058 3.6367 -0.2203 26 1 3.8593 7.9961 -0.3525 27 1 6.1529 0.0829 1.0230 28 1 6.1462 -0.9776 -0.4067 29 1 6.1595 0.7906 -0.6103 30 1 4.1159 -2.1480 0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160277354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:23 Heat of formation + Delta-G solvation = -31.428763 kcal Electronic energy + Delta-G solvation = -15987.368288 eV Core-core repulsion = 13213.864139 eV Total energy + Delta-G solvation = -2773.504149 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 297.011 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33159 -39.42881 -36.37780 -34.81109 -34.08056 -33.08181 -30.77687 -30.07708 -27.23030 -25.86197 -24.29073 -22.39506 -21.36187 -20.11101 -18.14353 -17.13790 -16.70433 -16.37856 -15.99107 -15.70447 -15.29210 -14.87855 -14.59583 -14.26154 -14.04058 -13.87206 -13.48369 -13.05529 -12.85351 -12.81953 -12.68534 -12.51707 -12.24476 -12.00015 -11.76304 -11.58484 -11.11949 -10.37744 -10.29632 -9.88235 -9.52716 -8.51183 -6.07967 -0.36169 0.20634 0.53012 1.24880 1.31018 1.38980 1.84062 2.15514 2.62253 2.73827 3.17103 3.62072 3.72009 3.86169 4.04377 4.24701 4.38632 4.59494 4.70063 4.78711 4.79113 4.86225 5.00414 5.10987 5.25141 5.28110 5.46123 5.55860 5.70986 5.90191 6.46898 6.75603 7.25064 7.80674 8.65197 Molecular weight = 297.01amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.004745 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.853218 B = 5899.794304 C = 6929.911511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.066 4.066 3 C -0.099 4.099 4 C -0.111 4.111 5 C 0.477 3.523 6 O -0.605 6.605 7 N -0.571 5.571 8 C -0.329 4.329 9 H 0.064 0.936 10 C -0.006 4.006 11 N -0.918 5.918 12 Si 0.952 3.048 13 H -0.251 1.251 14 H -0.267 1.267 15 H -0.234 1.234 16 C -0.048 4.048 17 C -0.111 4.111 18 C -0.089 4.089 19 C -0.084 4.084 20 Br -0.027 7.027 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.139 0.861 25 H 0.387 0.613 26 H 0.284 0.716 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 -20.971 -0.193 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.068 4.068 3 C -0.118 4.118 4 C -0.115 4.115 5 C 0.267 3.733 6 O -0.492 6.492 7 N -0.210 5.210 8 C -0.458 4.458 9 H 0.083 0.917 10 C -0.207 4.207 11 N -0.557 5.557 12 Si 0.771 3.229 13 H -0.175 1.175 14 H -0.191 1.191 15 H -0.157 1.157 16 C -0.051 4.051 17 C -0.167 4.167 18 C -0.108 4.108 19 C -0.164 4.164 20 Br 0.059 6.941 21 H 0.109 0.891 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.157 0.843 25 H 0.224 0.776 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.128 -21.315 -0.128 25.034 hybrid contribution -0.125 1.245 -0.065 1.253 sum -13.253 -20.070 -0.193 24.052 Atomic orbital electron populations 1.21081 0.87811 1.04785 1.04321 1.19930 0.98176 0.90462 0.98229 1.21300 0.92088 0.98839 0.99620 1.20052 0.94286 0.93027 1.04134 1.18351 0.87414 0.84052 0.83522 1.90578 1.15329 1.87153 1.56176 1.41989 1.08947 1.05319 1.64754 1.19081 0.93715 0.83371 1.49638 0.91750 1.26098 1.05344 0.93587 0.95690 1.69754 1.39216 0.98687 1.48083 0.85553 0.76583 0.80409 0.80355 1.17494 1.19131 1.15744 1.20095 0.97295 0.91120 0.96541 1.20925 0.89833 1.03035 1.02899 1.21113 0.92040 0.98277 0.99391 1.22012 0.94683 0.92105 1.07580 1.96655 1.74684 1.25222 1.97515 0.89089 0.89593 0.89701 0.84347 0.77599 0.90663 0.91643 0.89640 0.91436 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 9.55 71.23 0.68 -1.47 16 2 C -0.07 -1.62 5.88 -19.89 -0.12 -1.73 16 3 C -0.10 -2.96 9.17 22.53 0.21 -2.75 16 4 C -0.11 -4.14 5.87 -20.09 -0.12 -4.25 16 5 C 0.48 22.86 7.65 86.74 0.66 23.53 16 6 O -0.61 -33.48 12.92 -4.03 -0.05 -33.53 16 7 N -0.57 -27.80 5.03 -309.78 -1.56 -29.36 16 8 C -0.33 -19.16 10.16 84.10 0.85 -18.30 16 9 H 0.06 4.41 7.38 -2.92 -0.02 4.39 16 10 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 11 N -0.92 -53.94 13.95 21.68 0.30 -53.64 16 12 Si 0.95 37.74 27.74 68.60 1.90 39.64 16 13 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 14 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 15 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 16 C -0.05 -1.58 5.91 -19.60 -0.12 -1.69 16 17 C -0.11 -3.64 8.73 71.24 0.62 -3.02 16 18 C -0.09 -2.26 9.40 22.25 0.21 -2.05 16 19 C -0.08 -2.00 6.23 22.39 0.14 -1.86 16 20 Br -0.03 -0.49 31.75 -20.37 -0.65 -1.14 16 21 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.09 1.33 6.62 -2.39 -0.02 1.32 16 23 H 0.08 1.30 8.08 -2.38 -0.02 1.28 16 24 H 0.14 3.77 6.45 -2.91 -0.02 3.76 16 25 H 0.39 15.89 3.83 -92.71 -0.36 15.54 16 26 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.06 2.21 8.14 -2.38 -0.02 2.20 16 28 H 0.08 2.12 8.04 -2.39 -0.02 2.10 16 29 H 0.07 2.74 5.85 -2.39 -0.01 2.73 16 30 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -69.12 275.08 4.21 -64.91 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.77 Total: 26.60 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 3.49 Total: -13.48 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.26 Total: -83.00 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.05 Total: -33.53 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 1.90 Total: 39.64 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -0.65 Total: -1.14 kcal Total: -69.12 4.21 -64.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160277354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.483 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds