Wall clock time and date at job start Tue Mar 31 2020 03:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46496 * 120.00117 * 2 1 4 4 C 1.50698 * 109.46885 * 269.99715 * 3 2 1 5 5 H 1.08001 * 120.00369 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99781 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00193 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99928 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47425 * 59.99983 * 8 6 4 10 10 H 1.48503 * 109.46814 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47086 * 299.99701 * 8 6 4 12 12 C 1.34780 * 119.99313 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99343 * 179.97438 * 12 2 1 14 14 C 1.50692 * 120.00544 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.46995 * 180.02562 * 14 12 2 16 16 N 1.46907 * 109.46881 * 180.02562 * 15 14 12 17 17 C 1.50034 * 110.99697 * 290.11931 * 16 15 14 18 18 C 1.51524 * 102.46253 * 212.66279 * 17 16 15 19 19 H 1.08997 * 111.11811 * 287.43882 * 18 17 16 20 20 C 1.51575 * 123.30647 * 151.73712 * 18 17 16 21 21 C 1.56334 * 101.81517 * 207.90910 * 20 18 17 22 22 C 1.55992 * 105.78040 * 25.42131 * 21 20 18 23 23 H 1.08998 * 110.52572 * 248.17342 * 22 21 20 24 24 O 1.42905 * 110.52174 * 125.56645 * 22 21 20 25 25 C 1.49722 * 103.99141 * 6.94202 * 22 21 20 26 26 H 1.09007 * 108.55309 * 78.03346 * 25 22 21 27 27 C 1.49693 * 110.99759 * 170.34442 * 16 15 14 28 28 H 1.09005 * 109.47113 * 270.00008 * 1 2 3 29 29 H 1.08998 * 109.47073 * 29.99910 * 1 2 3 30 30 H 1.09005 * 109.47090 * 150.00184 * 1 2 3 31 31 H 1.09001 * 109.47093 * 29.99787 * 3 2 1 32 32 H 1.09001 * 109.46667 * 149.99842 * 3 2 1 33 33 H 0.96999 * 120.00461 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47496 * 59.99641 * 14 12 2 35 35 H 1.09002 * 109.47210 * 299.99619 * 14 12 2 36 36 H 1.08993 * 109.47746 * 59.99733 * 15 14 12 37 37 H 1.09004 * 109.47092 * 299.99379 * 15 14 12 38 38 H 1.09000 * 110.80312 * 94.42055 * 17 16 15 39 39 H 1.08997 * 110.81163 * 330.91007 * 17 16 15 40 40 H 1.08989 * 110.96061 * 89.77241 * 20 18 17 41 41 H 1.09003 * 110.98476 * 326.04870 * 20 18 17 42 42 H 1.09006 * 110.17922 * 266.34494 * 21 20 18 43 43 H 1.08997 * 110.25523 * 144.54247 * 21 20 18 44 44 H 0.96699 * 113.99962 * 61.45964 * 24 22 21 45 45 H 1.09002 * 110.40098 * 234.10359 * 27 16 15 46 46 H 1.08999 * 110.40244 * 356.39881 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5525 3.6185 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.1392 3.5946 -4.1338 10 1 4.1796 4.7033 -3.4339 11 1 4.2397 2.3828 -4.1342 12 6 2.1388 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0018 16 7 1.6450 -4.9075 0.0012 17 6 0.9575 -5.1319 1.3157 18 6 1.0086 -6.6396 1.4582 19 1 0.3150 -7.1228 0.7701 20 6 1.0316 -7.3487 2.7977 21 6 1.7933 -8.6684 2.4482 22 6 2.6772 -8.3322 1.2076 23 1 2.3166 -8.8627 0.3264 24 8 4.0446 -8.6594 1.4632 25 6 2.5142 -6.8537 1.0370 26 1 3.1383 -6.3486 1.7744 27 6 2.5702 -6.0610 -0.2320 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1382 0.5139 33 1 4.0294 4.4443 -0.8504 34 1 0.7590 -2.5303 -0.8896 35 1 0.7584 -2.5299 0.8903 36 1 3.0056 -3.5772 0.8921 37 1 3.0069 -3.5780 -0.8878 38 1 -0.0739 -4.7812 1.2780 39 1 1.5029 -4.6476 2.1257 40 1 0.0202 -7.5621 3.1433 41 1 1.5799 -6.7664 3.5383 42 1 1.0837 -9.4582 2.2017 43 1 2.4207 -8.9749 3.2852 44 1 4.1978 -9.5973 1.6418 45 1 2.2228 -6.6630 -1.0717 46 1 3.5837 -5.7042 -0.4150 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252894221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:12 Heat of formation + Delta-G solvation = -70.312082 kcal Electronic energy + Delta-G solvation = -24250.611886 eV Core-core repulsion = 20754.358097 eV Total energy + Delta-G solvation = -3496.253789 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.81678 -38.94706 -37.21892 -35.05643 -34.66214 -32.64118 -31.68670 -29.92495 -28.53352 -27.31461 -25.95449 -25.66767 -23.89863 -22.31512 -20.84594 -20.71587 -20.17052 -18.32202 -17.40091 -16.53494 -16.42111 -16.32514 -15.57374 -15.30873 -15.09696 -14.84977 -14.36999 -14.18003 -13.94712 -13.54247 -13.11654 -12.81258 -12.65681 -12.59012 -12.36587 -12.14883 -11.99185 -11.81003 -11.75076 -11.45337 -11.32117 -11.12070 -11.00903 -10.87469 -10.78474 -10.68108 -10.50409 -10.40093 -10.25980 -10.12731 -9.60944 -8.84569 -8.43393 -8.40440 -7.59625 -6.01279 -4.06009 3.34178 3.38368 3.40616 3.50775 3.59404 3.63756 3.88078 4.15148 4.33208 4.48340 4.68082 4.72061 4.75379 4.88986 5.03557 5.17170 5.18681 5.23503 5.30708 5.32214 5.36397 5.44229 5.51114 5.56385 5.62097 5.67592 5.68573 5.78003 5.82244 5.83454 5.93156 5.97939 6.11193 6.14325 6.17765 6.27163 6.74450 6.96626 7.09860 7.31488 7.47708 7.58619 7.95265 8.27017 8.47052 8.93594 9.14812 9.59009 11.06815 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.002706 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.297037 B =10343.571316 C =10752.670820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.132 4.132 15 C 0.065 3.935 16 N -0.525 5.525 17 C 0.050 3.950 18 C -0.112 4.112 19 H 0.091 0.909 20 C -0.105 4.105 21 C -0.155 4.155 22 C 0.122 3.878 23 H 0.063 0.937 24 O -0.564 6.564 25 C -0.129 4.129 26 H 0.076 0.924 27 C 0.060 3.940 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.376 0.624 45 H 0.078 0.922 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 -24.932 6.218 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.172 4.172 15 C -0.063 4.063 16 N -0.249 5.249 17 C -0.077 4.077 18 C -0.131 4.131 19 H 0.109 0.891 20 C -0.143 4.143 21 C -0.192 4.192 22 C 0.062 3.938 23 H 0.081 0.919 24 O -0.369 6.369 25 C -0.148 4.148 26 H 0.095 0.905 27 C -0.067 4.067 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.223 0.777 45 H 0.097 0.903 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.123 -24.011 5.749 25.991 hybrid contribution 0.601 -0.145 -0.225 0.658 sum -7.522 -24.156 5.524 25.896 Atomic orbital electron populations 1.21635 0.81455 1.02629 1.00304 1.48161 1.06183 1.07873 1.71371 1.19273 0.92539 0.78192 0.97457 1.21406 1.36498 1.06225 0.92320 0.92521 1.24942 0.95381 0.96390 0.97446 1.69923 1.38437 1.14362 1.30797 0.86553 0.78355 0.77801 0.84680 1.20244 1.21186 1.20161 1.20333 0.88080 0.85210 0.77391 1.90665 1.14028 1.87386 1.50335 1.21578 0.99188 0.92558 1.03905 1.22030 0.94615 0.87247 1.02437 1.65152 1.27653 1.01839 1.30237 1.22565 1.00147 0.94155 0.90852 1.22510 0.96357 0.96260 0.98001 0.89117 1.21864 1.00406 0.95665 0.96377 1.23697 0.99052 0.98183 0.98318 1.21537 0.81544 0.94695 0.95980 0.91938 1.86613 1.26053 1.30703 1.93544 1.21968 0.97820 0.95045 0.99990 0.90548 1.21941 0.96378 0.91960 0.96453 0.93885 0.90866 0.92279 0.95078 0.93913 0.92684 0.88723 0.89956 0.93855 0.89821 0.89715 0.92879 0.91112 0.91088 0.91065 0.90727 0.77692 0.90324 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.97 16 2 N -0.60 -13.15 2.86 -182.95 -0.52 -13.68 16 3 C 0.24 6.58 5.16 -5.20 -0.03 6.55 16 4 C -0.53 -15.26 9.39 -34.44 -0.32 -15.58 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 8 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.50 10.72 7.67 -10.99 -0.08 10.63 16 13 O -0.55 -14.08 15.56 5.55 0.09 -13.99 16 14 C -0.13 -2.02 4.31 -27.89 -0.12 -2.14 16 15 C 0.07 0.97 3.95 -3.82 -0.02 0.96 16 16 N -0.52 -6.42 5.28 -232.30 -1.23 -7.65 16 17 C 0.05 0.51 5.56 -2.81 -0.02 0.50 16 18 C -0.11 -0.96 3.13 -89.45 -0.28 -1.24 16 19 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 20 C -0.11 -0.75 6.62 -25.66 -0.17 -0.92 16 21 C -0.15 -0.98 6.75 -23.34 -0.16 -1.14 16 22 C 0.12 0.98 4.16 -26.75 -0.11 0.87 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 O -0.56 -5.04 13.31 -35.23 -0.47 -5.51 16 25 C -0.13 -1.28 2.26 -91.23 -0.21 -1.49 16 26 H 0.08 0.92 7.97 -51.93 -0.41 0.51 16 27 C 0.06 0.67 6.74 -3.88 -0.03 0.65 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.09 1.35 7.40 -51.93 -0.38 0.97 16 35 H 0.08 1.08 7.48 -51.93 -0.39 0.69 16 36 H 0.04 0.70 7.83 -51.93 -0.41 0.29 16 37 H 0.08 1.38 7.96 -51.93 -0.41 0.97 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.58 7.71 -51.93 -0.40 0.18 16 40 H 0.07 0.42 8.14 -51.94 -0.42 0.00 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.46 8.01 -51.93 -0.42 0.04 16 44 H 0.38 1.62 9.11 45.56 0.42 2.04 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.82 7.59 -51.93 -0.39 0.43 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -34.75 364.89 -9.23 -43.98 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.29 Total: -0.78 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.02 Total: 1.29 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -1.01 Total: -47.71 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.38 Total: -19.50 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.75 -9.23 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252894221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.333 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds