Wall clock time and date at job start Tue Mar 31 2020 03:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46496 * 120.00117 * 2 1 4 4 C 1.50698 * 109.46885 * 269.99715 * 3 2 1 5 5 H 1.08001 * 120.00369 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99781 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00193 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99928 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47425 * 59.99983 * 8 6 4 10 10 H 1.48503 * 109.46814 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47086 * 299.99701 * 8 6 4 12 12 C 1.34780 * 119.99313 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99343 * 179.97438 * 12 2 1 14 14 C 1.50692 * 120.00544 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.46995 * 180.02562 * 14 12 2 16 16 N 1.46907 * 109.46881 * 180.02562 * 15 14 12 17 17 C 1.50034 * 110.99697 * 290.11931 * 16 15 14 18 18 C 1.51524 * 102.46253 * 212.66279 * 17 16 15 19 19 H 1.08997 * 111.11811 * 287.43882 * 18 17 16 20 20 C 1.51575 * 123.30647 * 151.73712 * 18 17 16 21 21 C 1.56334 * 101.81517 * 207.90910 * 20 18 17 22 22 C 1.55992 * 105.78040 * 25.42131 * 21 20 18 23 23 H 1.08998 * 110.52572 * 248.17342 * 22 21 20 24 24 O 1.42905 * 110.52174 * 125.56645 * 22 21 20 25 25 C 1.49722 * 103.99141 * 6.94202 * 22 21 20 26 26 H 1.09007 * 108.55309 * 78.03346 * 25 22 21 27 27 C 1.49693 * 110.99759 * 170.34442 * 16 15 14 28 28 H 1.09005 * 109.47113 * 270.00008 * 1 2 3 29 29 H 1.08998 * 109.47073 * 29.99910 * 1 2 3 30 30 H 1.09005 * 109.47090 * 150.00184 * 1 2 3 31 31 H 1.09001 * 109.47093 * 29.99787 * 3 2 1 32 32 H 1.09001 * 109.46667 * 149.99842 * 3 2 1 33 33 H 0.96999 * 120.00461 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47496 * 59.99641 * 14 12 2 35 35 H 1.09002 * 109.47210 * 299.99619 * 14 12 2 36 36 H 1.08993 * 109.47746 * 59.99733 * 15 14 12 37 37 H 1.09004 * 109.47092 * 299.99379 * 15 14 12 38 38 H 1.09000 * 110.80312 * 94.42055 * 17 16 15 39 39 H 1.08997 * 110.81163 * 330.91007 * 17 16 15 40 40 H 1.08989 * 110.96061 * 89.77241 * 20 18 17 41 41 H 1.09003 * 110.98476 * 326.04870 * 20 18 17 42 42 H 1.09006 * 110.17922 * 266.34494 * 21 20 18 43 43 H 1.08997 * 110.25523 * 144.54247 * 21 20 18 44 44 H 0.96699 * 113.99962 * 61.45964 * 24 22 21 45 45 H 1.09002 * 110.40098 * 234.10359 * 27 16 15 46 46 H 1.08999 * 110.40244 * 356.39881 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.5525 3.6185 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.1392 3.5946 -4.1338 10 1 4.1796 4.7033 -3.4339 11 1 4.2397 2.3828 -4.1342 12 6 2.1388 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0018 16 7 1.6450 -4.9075 0.0012 17 6 0.9575 -5.1319 1.3157 18 6 1.0086 -6.6396 1.4582 19 1 0.3150 -7.1228 0.7701 20 6 1.0316 -7.3487 2.7977 21 6 1.7933 -8.6684 2.4482 22 6 2.6772 -8.3322 1.2076 23 1 2.3166 -8.8627 0.3264 24 8 4.0446 -8.6594 1.4632 25 6 2.5142 -6.8537 1.0370 26 1 3.1383 -6.3486 1.7744 27 6 2.5702 -6.0610 -0.2320 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1382 0.5139 33 1 4.0294 4.4443 -0.8504 34 1 0.7590 -2.5303 -0.8896 35 1 0.7584 -2.5299 0.8903 36 1 3.0056 -3.5772 0.8921 37 1 3.0069 -3.5780 -0.8878 38 1 -0.0739 -4.7812 1.2780 39 1 1.5029 -4.6476 2.1257 40 1 0.0202 -7.5621 3.1433 41 1 1.5799 -6.7664 3.5383 42 1 1.0837 -9.4582 2.2017 43 1 2.4207 -8.9749 3.2852 44 1 4.1978 -9.5973 1.6418 45 1 2.2228 -6.6630 -1.0717 46 1 3.5837 -5.7042 -0.4150 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252894221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:11 Heat of formation + Delta-G solvation = -97.141323 kcal Electronic energy + Delta-G solvation = -24251.775289 eV Core-core repulsion = 20754.358097 eV Total energy + Delta-G solvation = -3497.417192 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60418 -40.60737 -38.02852 -36.63215 -35.73439 -34.74847 -32.85702 -30.72216 -30.08096 -28.67582 -27.26021 -26.64303 -25.44862 -23.82462 -21.86927 -21.41756 -20.90049 -19.95279 -18.71269 -18.12482 -17.84814 -17.26600 -16.95403 -16.74103 -16.32919 -16.06505 -15.73222 -15.34251 -15.00580 -14.61849 -14.34832 -14.02849 -13.81677 -13.66895 -13.51282 -13.43634 -13.35960 -13.22484 -13.14371 -12.81427 -12.61730 -12.56416 -12.30316 -12.20375 -12.14010 -11.90810 -11.73015 -11.66895 -11.38504 -11.10871 -10.86273 -10.65664 -10.62095 -9.45292 -9.42043 -8.23656 -6.38949 1.35440 1.40283 1.47523 1.82630 2.26304 2.40679 2.86973 2.96322 3.05632 3.27457 3.68739 3.83570 3.92923 3.99634 4.02258 4.15202 4.18203 4.27402 4.36848 4.41871 4.50812 4.56912 4.62507 4.66514 4.72296 4.75949 4.86001 4.90071 4.91202 4.94308 4.98692 5.03742 5.07674 5.11162 5.17144 5.21189 5.32175 5.42214 5.54939 5.76055 5.83346 5.91561 6.04857 6.68094 6.78149 6.91484 7.26731 7.47341 8.83366 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.002706 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.297037 B =10343.571316 C =10752.670820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.493 3.507 13 O -0.604 6.604 14 C -0.110 4.110 15 C 0.074 3.926 16 N -0.521 5.521 17 C 0.045 3.955 18 C -0.100 4.100 19 H 0.105 0.895 20 C -0.104 4.104 21 C -0.146 4.146 22 C 0.120 3.880 23 H 0.077 0.923 24 O -0.589 6.589 25 C -0.131 4.131 26 H 0.046 0.954 27 C 0.057 3.943 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.024 0.976 32 H -0.005 1.005 33 H 0.268 0.732 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.020 0.980 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.041 0.959 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.395 0.605 45 H 0.093 0.907 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.329 -26.950 5.481 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.282 3.718 13 O -0.486 6.486 14 C -0.150 4.150 15 C -0.055 4.055 16 N -0.245 5.245 17 C -0.082 4.082 18 C -0.118 4.118 19 H 0.123 0.877 20 C -0.142 4.142 21 C -0.184 4.184 22 C 0.061 3.939 23 H 0.095 0.905 24 O -0.398 6.398 25 C -0.151 4.151 26 H 0.064 0.936 27 C -0.070 4.070 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.042 0.958 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.245 0.755 45 H 0.112 0.888 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.943 -26.063 5.025 28.711 hybrid contribution 1.484 0.457 0.061 1.554 sum -9.459 -25.606 5.086 27.767 Atomic orbital electron populations 1.21957 0.77641 1.04131 1.02656 1.48209 1.08565 1.06320 1.71107 1.18754 0.91045 0.80537 0.96058 1.21683 1.36978 1.06580 0.93023 0.92843 1.25899 0.94853 0.96393 1.02165 1.70045 1.38904 1.14810 1.33185 0.85448 0.78929 0.77337 0.78980 1.18252 1.20238 1.20391 1.21415 0.87781 0.86824 0.75794 1.90634 1.16895 1.88315 1.52775 1.21478 0.98667 0.88530 1.06347 1.21808 0.94395 0.88982 1.00305 1.65200 1.27050 1.00681 1.31565 1.22694 1.00491 0.95660 0.89347 1.22498 0.95129 0.95065 0.99156 0.87723 1.21891 1.01481 0.95660 0.95212 1.23649 0.99013 0.98272 0.97444 1.21627 0.81596 0.93217 0.97489 0.90474 1.86567 1.26805 1.32683 1.93716 1.21968 0.98727 0.96263 0.98130 0.93584 1.21967 0.95216 0.92021 0.97837 0.91034 0.91607 0.88551 0.95768 0.98698 0.92355 0.86426 0.86720 0.96147 0.92188 0.87768 0.94086 0.89138 0.92367 0.88797 0.90606 0.75519 0.88846 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.65 16 2 N -0.61 -26.76 2.86 -851.11 -2.43 -29.19 16 3 C 0.26 14.41 5.16 85.63 0.44 14.85 16 4 C -0.54 -32.31 9.39 25.60 0.24 -32.07 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.34 5.46 84.66 0.46 0.80 16 7 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 8 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.49 21.31 7.67 87.65 0.67 21.99 16 13 O -0.60 -32.89 15.56 -3.05 -0.05 -32.94 16 14 C -0.11 -3.21 4.31 29.85 0.13 -3.08 16 15 C 0.07 2.26 3.95 86.30 0.34 2.60 16 16 N -0.52 -12.20 5.28 -888.87 -4.70 -16.90 16 17 C 0.04 0.83 5.56 85.21 0.47 1.30 16 18 C -0.10 -1.46 3.13 -10.04 -0.03 -1.49 16 19 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 20 C -0.10 -1.23 6.62 31.29 0.21 -1.02 16 21 C -0.15 -1.46 6.75 32.79 0.22 -1.24 16 22 C 0.12 1.72 4.16 30.58 0.13 1.85 16 23 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 24 O -0.59 -10.06 13.31 -148.98 -1.98 -12.04 16 25 C -0.13 -2.53 2.26 -11.19 -0.03 -2.56 16 26 H 0.05 1.16 7.97 -2.38 -0.02 1.14 16 27 C 0.06 1.27 6.74 84.71 0.57 1.84 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 30 H 0.10 2.18 6.44 -2.38 -0.02 2.16 16 31 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 32 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.12 2.97 7.40 -2.39 -0.02 2.95 16 35 H 0.11 2.64 7.48 -2.39 -0.02 2.63 16 36 H 0.02 0.70 7.83 -2.39 -0.02 0.68 16 37 H 0.06 2.08 7.96 -2.39 -0.02 2.07 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.04 0.87 7.71 -2.39 -0.02 0.85 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.08 0.76 8.01 -2.39 -0.02 0.74 16 44 H 0.39 2.88 9.11 -74.06 -0.67 2.21 16 45 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.04 1.17 7.59 -2.39 -0.02 1.15 16 Total: -1.00 -79.90 364.89 -1.43 -81.33 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.28 Total: 11.74 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.14 Total: 7.42 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -6.84 Total: -103.40 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -2.03 Total: -44.98 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.90 -1.43 -81.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252894221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.816 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds