Wall clock time and date at job start Tue Mar 31 2020 03:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47295 * 2 1 4 4 C 1.50699 * 109.47073 * 120.00310 * 2 1 3 5 5 O 1.21279 * 120.00223 * 94.04649 * 4 2 1 6 6 N 1.34777 * 120.00122 * 274.04264 * 4 2 1 7 7 C 1.46506 * 119.99579 * 356.25096 * 6 4 2 8 8 C 1.46493 * 120.00179 * 175.97396 * 6 4 2 9 9 C 1.50693 * 109.47336 * 90.00196 * 8 6 4 10 10 H 1.08001 * 120.00222 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00575 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99872 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00477 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46810 * 59.99893 * 13 11 9 15 15 H 1.48503 * 109.47039 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47047 * 299.99737 * 13 11 9 17 17 N 1.46895 * 109.46993 * 240.00001 * 2 1 3 18 18 C 1.47010 * 111.00468 * 177.19730 * 17 2 1 19 19 C 1.53098 * 109.26328 * 177.60839 * 18 17 2 20 20 O 1.43017 * 109.25523 * 56.84628 * 19 18 17 21 21 C 1.43017 * 113.74189 * 301.33201 * 20 19 18 22 22 H 1.08997 * 109.53555 * 298.71240 * 21 20 19 23 23 C 1.52992 * 109.50529 * 178.60632 * 21 20 19 24 24 C 1.53009 * 117.49891 * 128.83879 * 23 21 20 25 25 C 1.52998 * 60.00096 * 252.50739 * 24 23 21 26 26 C 1.47017 * 111.00092 * 53.56111 * 17 2 1 27 27 H 1.09004 * 109.46921 * 300.48325 * 1 2 3 28 28 H 1.09000 * 109.47441 * 60.47937 * 1 2 3 29 29 H 1.08998 * 109.47074 * 180.48965 * 1 2 3 30 30 H 1.09006 * 109.46648 * 275.39528 * 7 6 4 31 31 H 1.08994 * 109.47077 * 35.39786 * 7 6 4 32 32 H 1.08998 * 109.46982 * 155.40512 * 7 6 4 33 33 H 1.09006 * 109.47204 * 210.00205 * 8 6 4 34 34 H 1.09002 * 109.47608 * 329.99580 * 8 6 4 35 35 H 0.97001 * 120.00181 * 180.02562 * 12 11 9 36 36 H 1.09009 * 109.50456 * 297.54606 * 18 17 2 37 37 H 1.09001 * 109.50523 * 57.66922 * 18 17 2 38 38 H 1.08995 * 109.50381 * 296.91768 * 19 18 17 39 39 H 1.09000 * 109.50915 * 176.77995 * 19 18 17 40 40 H 1.09004 * 115.55424 * 274.54100 * 23 21 20 41 41 H 1.09007 * 117.49444 * 359.97438 * 24 23 21 42 42 H 1.08995 * 117.49990 * 145.01414 * 24 23 21 43 43 H 1.09000 * 117.50009 * 252.50857 * 25 24 23 44 44 H 1.08996 * 117.49722 * 107.48476 * 25 24 23 45 45 H 1.09006 * 109.50804 * 302.32755 * 26 17 2 46 46 H 1.09003 * 109.50725 * 62.45473 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3044 -1.8913 1.1803 6 7 2.1794 -0.0336 2.3866 7 6 1.9298 1.4094 2.4274 8 6 2.5829 -0.7419 3.6038 9 6 4.0862 -0.7458 3.7077 10 1 4.6817 -0.2688 2.9433 11 6 4.7018 -1.3592 4.7782 12 7 3.9768 -1.9406 5.7089 13 14 6.5654 -1.3647 4.9066 14 1 7.0619 0.0338 4.9605 15 1 6.9744 -2.0826 6.1406 16 1 7.1412 -2.0492 3.7213 17 7 2.0196 -0.6925 -1.1994 18 6 3.4877 -0.6543 -1.2675 19 6 3.9567 -1.4364 -2.4972 20 8 3.3459 -0.8861 -3.6674 21 6 1.9163 -0.9079 -3.6352 22 1 1.5689 -1.9388 -3.5660 23 6 1.3667 -0.2683 -4.9117 24 6 0.3222 -1.0572 -5.7041 25 6 1.7460 -0.9145 -6.2457 26 6 1.4266 -0.1205 -2.4170 27 1 -0.3633 0.5213 0.8857 28 1 -0.3634 0.5064 -0.8942 29 1 -0.3633 -1.0276 0.0088 30 1 2.8279 1.9424 2.1153 31 1 1.1088 1.6553 1.7539 32 1 1.6671 1.7041 3.4434 33 1 2.1599 -0.2394 4.4737 34 1 2.2187 -1.7685 3.5645 35 1 4.4098 -2.3719 6.4621 36 1 3.8216 0.3804 -1.3451 37 1 3.9056 -1.1058 -0.3678 38 1 3.6692 -2.4828 -2.3945 39 1 5.0408 -1.3629 -2.5837 40 1 1.2670 0.8170 -4.8885 41 1 0.0271 -2.0322 -5.3161 42 1 -0.4648 -0.4911 -6.2022 43 1 1.8957 -0.2545 -7.1001 44 1 2.3872 -1.7953 -6.2138 45 1 0.3400 -0.1823 -2.3564 46 1 1.7276 0.9228 -2.5130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331429494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:22 Heat of formation + Delta-G solvation = -38.437456 kcal Electronic energy + Delta-G solvation = -25191.366585 eV Core-core repulsion = 21696.494983 eV Total energy + Delta-G solvation = -3494.871602 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.20349 -38.88695 -37.00068 -35.68030 -34.73459 -32.66143 -31.33689 -30.82708 -27.82200 -26.73388 -25.91476 -24.82527 -23.40431 -22.52266 -21.98822 -20.78539 -20.39028 -18.32689 -16.81780 -16.68908 -16.45835 -16.26571 -15.38709 -15.19577 -15.12260 -14.92312 -14.45727 -14.07613 -13.89745 -13.66693 -13.45318 -13.15587 -12.55174 -12.32538 -12.09582 -12.02018 -11.84186 -11.76307 -11.70214 -11.46524 -11.23838 -11.19563 -11.05438 -10.88491 -10.79127 -10.57909 -10.55420 -10.19960 -10.14765 -9.64562 -9.60017 -8.81248 -8.43206 -8.20354 -7.63342 -6.04187 -4.08855 3.25866 3.31558 3.34970 3.36124 3.41293 3.63990 3.98764 4.11162 4.44671 4.47849 4.66383 4.84440 4.89339 4.94750 5.10144 5.15377 5.18998 5.23425 5.25031 5.30621 5.41582 5.42442 5.48771 5.52801 5.61883 5.66362 5.69333 5.77763 5.84516 5.90387 5.91387 5.95493 6.06982 6.07674 6.11989 6.25516 6.88609 7.01074 7.12014 7.21664 7.42683 7.55250 7.92008 8.23501 8.41992 8.90439 9.12556 9.56152 11.03862 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023187 B = 0.003706 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.277861 B = 7554.454445 C = 8317.181026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.056 0.944 4 C 0.510 3.490 5 O -0.519 6.519 6 N -0.605 5.605 7 C 0.084 3.916 8 C 0.248 3.752 9 C -0.525 4.525 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.513 5.513 18 C 0.016 3.984 19 C 0.069 3.931 20 O -0.382 6.382 21 C 0.126 3.874 22 H 0.067 0.933 23 C -0.150 4.150 24 C -0.173 4.173 25 C -0.165 4.165 26 C 0.026 3.974 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.264 0.736 36 H 0.038 0.962 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 6.817 -18.999 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.074 0.926 4 C 0.294 3.706 5 O -0.394 6.394 6 N -0.338 5.338 7 C -0.060 4.060 8 C 0.129 3.871 9 C -0.564 4.564 10 H 0.073 0.927 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.239 5.239 18 C -0.112 4.112 19 C -0.008 4.008 20 O -0.301 6.301 21 C 0.068 3.932 22 H 0.085 0.915 23 C -0.168 4.168 24 C -0.210 4.210 25 C -0.202 4.202 26 C -0.102 4.102 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.109 0.891 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.563 5.651 -18.925 21.150 hybrid contribution 1.240 0.958 0.523 1.652 sum -6.323 6.609 -18.402 20.550 Atomic orbital electron populations 1.21818 0.92428 1.03589 1.02090 1.21686 0.96963 0.95891 0.90213 0.92591 1.20016 0.79073 0.87621 0.83840 1.90673 1.49260 1.15632 1.83855 1.48173 1.66735 1.07869 1.11015 1.21656 0.99540 0.82392 1.02399 1.19284 0.95219 0.93121 0.79508 1.21372 0.91676 1.35918 1.07417 0.92662 1.24932 0.98518 0.95057 0.95574 1.69920 1.35491 1.36479 1.11566 0.86569 0.85347 0.78102 0.77467 1.20293 1.21152 1.20152 1.61894 1.06774 1.54657 1.00539 1.22851 0.87827 0.99550 1.00947 1.22635 0.97606 0.97150 0.83432 1.87959 1.18653 1.83358 1.40128 1.21595 0.81371 0.98406 0.91871 0.91465 1.22138 1.03920 0.98942 0.91834 1.23020 0.92637 1.01814 1.03536 1.22824 0.97755 1.03302 0.96304 1.22830 1.00769 0.96746 0.89869 0.91454 0.91763 0.90952 0.93536 0.92836 0.91044 0.95050 0.93981 0.92660 0.94416 0.88218 0.92001 0.88378 0.87427 0.88510 0.88475 0.88807 0.88423 0.89147 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.58 37.16 0.32 -1.48 16 2 C 0.06 1.01 1.63 -68.87 -0.11 0.89 16 3 H 0.06 0.81 6.80 -51.93 -0.35 0.46 16 4 C 0.51 10.68 5.88 -10.99 -0.06 10.61 16 5 O -0.52 -13.20 15.28 5.56 0.08 -13.12 16 6 N -0.60 -12.86 2.86 -182.96 -0.52 -13.39 16 7 C 0.08 1.35 9.82 59.85 0.59 1.93 16 8 C 0.25 6.50 5.17 -5.20 -0.03 6.48 16 9 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 13 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 N -0.51 -7.95 4.29 -227.72 -0.98 -8.93 16 18 C 0.02 0.26 5.35 -3.71 -0.02 0.24 16 19 C 0.07 0.96 7.01 37.21 0.26 1.22 16 20 O -0.38 -5.25 10.38 -35.23 -0.37 -5.62 16 21 C 0.13 1.50 3.00 -26.69 -0.08 1.42 16 22 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 23 C -0.15 -1.43 5.40 -90.62 -0.49 -1.92 16 24 C -0.17 -1.36 10.18 -26.73 -0.27 -1.63 16 25 C -0.16 -1.43 10.16 -26.73 -0.27 -1.71 16 26 C 0.03 0.32 4.44 -3.71 -0.02 0.30 16 27 H 0.07 0.79 7.09 -51.93 -0.37 0.42 16 28 H 0.06 0.64 6.24 -51.93 -0.32 0.32 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.67 5.58 -51.93 -0.29 0.38 16 32 H 0.07 1.09 7.83 -51.93 -0.41 0.69 16 33 H 0.03 0.83 7.85 -51.93 -0.41 0.42 16 34 H 0.04 1.25 7.48 -51.93 -0.39 0.86 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 37 H 0.10 1.92 6.50 -51.93 -0.34 1.58 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 41 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.97 6.06 -51.93 -0.31 0.66 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -33.25 363.31 -8.98 -42.24 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.79 Total: -0.34 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.61 Total: 2.73 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.76 Total: -48.31 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.28 Total: -18.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.25 -8.98 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331429494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.801 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds