Wall clock time and date at job start Tue Mar 31 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46707 * 2 1 4 4 C 1.50699 * 109.47341 * 239.99582 * 2 1 3 5 5 O 1.21277 * 120.00425 * 268.72346 * 4 2 1 6 6 N 1.34774 * 119.99755 * 88.72474 * 4 2 1 7 7 C 1.46504 * 120.00118 * 354.59378 * 6 4 2 8 8 C 1.46500 * 120.00410 * 174.59074 * 6 4 2 9 9 C 1.50697 * 109.47013 * 89.99799 * 8 6 4 10 10 H 1.07994 * 120.00329 * 0.02562 * 9 8 6 11 11 C 1.37886 * 119.99675 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99993 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99835 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47439 * 59.99635 * 13 11 9 15 15 H 1.48501 * 109.46983 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46712 * 299.99822 * 13 11 9 17 17 N 1.46900 * 109.47089 * 119.99949 * 2 1 3 18 18 C 1.47014 * 111.00149 * 173.66060 * 17 2 1 19 19 C 1.53100 * 109.25925 * 177.60556 * 18 17 2 20 20 O 1.43017 * 109.25797 * 56.84839 * 19 18 17 21 21 C 1.43015 * 113.73595 * 301.32749 * 20 19 18 22 22 H 1.09000 * 109.51063 * 298.69543 * 21 20 19 23 23 C 1.52998 * 109.50695 * 178.60881 * 21 20 19 24 24 C 1.53000 * 117.50041 * 128.62476 * 23 21 20 25 25 C 1.53000 * 117.49969 * 59.99728 * 23 21 20 26 26 C 1.47012 * 111.00212 * 50.01887 * 17 2 1 27 27 H 1.09001 * 109.47385 * 302.49189 * 1 2 3 28 28 H 1.08997 * 109.47346 * 62.50082 * 1 2 3 29 29 H 1.09004 * 109.46637 * 182.49669 * 1 2 3 30 30 H 1.08996 * 109.47648 * 94.52020 * 7 6 4 31 31 H 1.09000 * 109.47280 * 214.52510 * 7 6 4 32 32 H 1.09002 * 109.46668 * 334.51947 * 7 6 4 33 33 H 1.09003 * 109.47659 * 210.00360 * 8 6 4 34 34 H 1.09008 * 109.46499 * 329.99858 * 8 6 4 35 35 H 0.97005 * 119.99868 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.50276 * 297.53830 * 18 17 2 37 37 H 1.09003 * 109.50996 * 57.62539 * 18 17 2 38 38 H 1.09001 * 109.50315 * 176.78111 * 19 18 17 39 39 H 1.09001 * 109.50636 * 296.86564 * 19 18 17 40 40 H 1.09001 * 115.54598 * 274.33025 * 23 21 20 41 41 H 1.08992 * 117.49837 * 359.97438 * 24 23 21 42 42 H 1.08998 * 117.49700 * 145.02420 * 24 23 21 43 43 H 1.09001 * 117.49965 * 214.97991 * 25 23 21 44 44 H 1.08997 * 117.50026 * 0.02562 * 25 23 21 45 45 H 1.08993 * 109.51011 * 302.33051 * 26 17 2 46 46 H 1.09004 * 109.50228 * 62.46283 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2566 -1.9018 -1.1937 6 7 2.2325 -0.0219 -2.3716 7 6 1.8507 1.3902 -2.4516 8 6 2.8319 -0.6855 -3.5320 9 6 1.7443 -1.2885 -4.3831 10 1 0.7100 -1.1872 -4.0894 11 6 2.0697 -1.9695 -5.5370 12 7 3.3293 -2.0933 -5.8945 13 14 0.7216 -2.7163 -6.5925 14 1 -0.1959 -1.6443 -7.0552 15 1 1.3293 -3.3901 -7.7680 16 1 -0.0404 -3.7089 -5.7928 17 7 2.0197 -0.6925 1.1994 18 6 3.4814 -0.8448 1.1601 19 6 3.9541 -1.5157 2.4525 20 8 3.2831 -2.7693 2.6059 21 6 1.8580 -2.6580 2.6488 22 1 1.5660 -2.0490 3.5043 23 6 1.2403 -4.0517 2.7792 24 6 0.2188 -4.2699 3.8972 25 6 1.6178 -4.8794 4.0094 26 6 1.3639 -1.9986 1.3584 27 1 -0.3634 0.5520 0.8668 28 1 -0.3634 0.4745 -0.9115 29 1 -0.3633 -1.0268 0.0448 30 1 2.7145 2.0138 -2.2213 31 1 1.4985 1.6148 -3.4584 32 1 1.0549 1.5926 -1.7347 33 1 3.3907 0.0434 -4.1190 34 1 3.5060 -1.4721 -3.1926 35 1 3.5582 -2.5721 -6.7065 36 1 3.7600 -1.4624 0.3063 37 1 3.9472 0.1363 1.0671 38 1 5.0302 -1.6825 2.4034 39 1 3.7239 -0.8725 3.3018 40 1 1.0831 -4.5858 1.8421 41 1 -0.0128 -3.4208 4.5400 42 1 -0.6106 -4.9477 3.6957 43 1 1.7086 -5.9581 3.8817 44 1 2.3059 -4.4309 4.7260 45 1 0.2841 -1.8598 1.4109 46 1 1.6088 -2.6347 0.5078 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331429504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:31 Heat of formation + Delta-G solvation = -36.900073 kcal Electronic energy + Delta-G solvation = -25573.458012 eV Core-core repulsion = 22078.653076 eV Total energy + Delta-G solvation = -3494.804936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40388 -38.77286 -36.81899 -35.57185 -34.74435 -32.68436 -31.32129 -30.63862 -27.83117 -26.70854 -25.92608 -24.61561 -23.44269 -22.38987 -21.94552 -20.67529 -20.34053 -18.34118 -16.79046 -16.61475 -16.48621 -16.17130 -15.46495 -15.11477 -14.99840 -14.66380 -14.57298 -14.18714 -13.84585 -13.61761 -13.30396 -13.00584 -12.46625 -12.24711 -12.08758 -12.01680 -11.77402 -11.62289 -11.57641 -11.50702 -11.20948 -11.02231 -10.85135 -10.78528 -10.62215 -10.58897 -10.39563 -10.16803 -10.07443 -9.69794 -9.56424 -9.38911 -8.45395 -7.81986 -7.66567 -6.06181 -4.10935 3.27022 3.30283 3.34709 3.38436 3.45314 3.89288 3.95402 4.14469 4.42869 4.65306 4.83926 4.99218 5.01127 5.08409 5.09698 5.26665 5.27804 5.30195 5.32992 5.35223 5.53105 5.55537 5.56420 5.63789 5.69765 5.76146 5.81290 5.86374 5.92190 6.01795 6.04764 6.11562 6.18106 6.18930 6.27999 6.48164 6.94482 7.05065 7.06769 7.32843 7.39089 7.50584 7.89443 8.21040 8.36586 8.86812 9.03409 9.54010 11.01955 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.004261 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.100232 B = 6569.641702 C = 7170.972661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 H 0.099 0.901 4 C 0.479 3.521 5 O -0.535 6.535 6 N -0.600 5.600 7 C 0.079 3.921 8 C 0.246 3.754 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 N -0.510 5.510 18 C 0.002 3.998 19 C 0.072 3.928 20 O -0.377 6.377 21 C 0.130 3.870 22 H 0.058 0.942 23 C -0.148 4.148 24 C -0.174 4.174 25 C -0.166 4.166 26 C 0.002 3.998 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 4.538 18.046 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.052 4.052 3 H 0.117 0.883 4 C 0.264 3.736 5 O -0.413 6.413 6 N -0.332 5.332 7 C -0.065 4.065 8 C 0.127 3.873 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.202 1.202 17 N -0.234 5.234 18 C -0.127 4.127 19 C -0.005 4.005 20 O -0.296 6.296 21 C 0.072 3.928 22 H 0.076 0.924 23 C -0.166 4.166 24 C -0.211 4.211 25 C -0.203 4.203 26 C -0.126 4.126 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.697 3.956 18.319 19.103 hybrid contribution -0.575 -0.448 -1.624 1.780 sum -4.272 3.508 16.695 17.587 Atomic orbital electron populations 1.21855 0.92404 1.03288 1.02548 1.21915 0.97202 0.98714 0.87407 0.88311 1.21457 0.79153 0.87972 0.85028 1.90603 1.52054 1.14685 1.83965 1.48301 1.60460 1.10573 1.13856 1.21710 0.99075 0.82682 1.02997 1.19261 0.93836 0.92930 0.81319 1.21358 0.93300 1.34894 1.06827 0.92604 1.24933 0.95602 0.95941 0.97587 1.69920 1.16471 1.42247 1.24783 0.86563 0.81821 0.79459 0.79607 1.20237 1.21134 1.20213 1.62757 1.05260 1.20643 1.34779 1.22943 0.88622 1.01432 0.99654 1.22546 0.96843 0.85307 0.95832 1.87992 1.18219 1.29476 1.93933 1.21579 0.80951 0.93586 0.96698 0.92382 1.22174 1.03089 0.96618 0.94755 1.22991 0.93098 1.03459 1.01548 1.22806 0.97734 0.99288 1.00431 1.23155 0.99292 0.90898 0.99230 0.91132 0.91417 0.91509 0.93693 0.90789 0.92087 0.95118 0.94178 0.92655 0.91434 0.90330 0.88714 0.92960 0.87071 0.88780 0.88524 0.88820 0.88633 0.89892 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.45 37.16 0.31 -1.57 16 2 C 0.06 0.91 2.12 -68.87 -0.15 0.76 16 3 H 0.10 1.31 6.88 -51.93 -0.36 0.96 16 4 C 0.48 9.75 5.79 -10.99 -0.06 9.68 16 5 O -0.54 -13.12 12.06 5.56 0.07 -13.06 16 6 N -0.60 -12.60 2.86 -182.95 -0.52 -13.13 16 7 C 0.08 1.24 9.88 59.85 0.59 1.83 16 8 C 0.25 6.45 5.14 -5.19 -0.03 6.43 16 9 C -0.52 -14.96 9.39 -34.44 -0.32 -15.28 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 13 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 N -0.51 -7.64 4.80 -227.72 -1.09 -8.73 16 18 C 0.00 0.03 5.17 -3.71 -0.02 0.01 16 19 C 0.07 0.95 7.01 37.21 0.26 1.21 16 20 O -0.38 -5.83 10.38 -35.23 -0.37 -6.20 16 21 C 0.13 1.80 3.00 -26.68 -0.08 1.72 16 22 H 0.06 0.75 7.90 -51.93 -0.41 0.34 16 23 C -0.15 -1.86 5.40 -90.62 -0.49 -2.35 16 24 C -0.17 -1.71 10.18 -26.73 -0.27 -1.98 16 25 C -0.17 -1.78 10.16 -26.73 -0.27 -2.05 16 26 C 0.00 0.03 4.04 -3.71 -0.01 0.01 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.87 6.95 -51.93 -0.36 0.51 16 29 H 0.07 0.96 6.11 -51.93 -0.32 0.64 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 32 H 0.06 0.77 5.19 -51.93 -0.27 0.50 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.19 7.50 -51.92 -0.39 0.80 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 1.29 6.01 -51.93 -0.31 0.98 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.11 1.52 8.11 -51.93 -0.42 1.10 16 41 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.17 5.99 -51.93 -0.31 0.86 16 46 H 0.09 1.76 5.50 -51.93 -0.29 1.48 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -33.08 357.06 -9.08 -42.15 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.62 Total: 2.54 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.64 Total: 0.10 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.88 Total: -47.90 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.30 Total: -19.25 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.08 -9.08 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331429504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.252 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds