Wall clock time and date at job start Tue Mar 31 2020 03:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46707 * 2 1 4 4 C 1.50699 * 109.47341 * 239.99582 * 2 1 3 5 5 O 1.21277 * 120.00425 * 268.72346 * 4 2 1 6 6 N 1.34774 * 119.99755 * 88.72474 * 4 2 1 7 7 C 1.46504 * 120.00118 * 354.59378 * 6 4 2 8 8 C 1.46500 * 120.00410 * 174.59074 * 6 4 2 9 9 C 1.50697 * 109.47013 * 89.99799 * 8 6 4 10 10 H 1.07994 * 120.00329 * 0.02562 * 9 8 6 11 11 C 1.37886 * 119.99675 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99993 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99835 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47439 * 59.99635 * 13 11 9 15 15 H 1.48501 * 109.46983 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46712 * 299.99822 * 13 11 9 17 17 N 1.46900 * 109.47089 * 119.99949 * 2 1 3 18 18 C 1.47014 * 111.00149 * 173.66060 * 17 2 1 19 19 C 1.53100 * 109.25925 * 177.60556 * 18 17 2 20 20 O 1.43017 * 109.25797 * 56.84839 * 19 18 17 21 21 C 1.43015 * 113.73595 * 301.32749 * 20 19 18 22 22 H 1.09000 * 109.51063 * 298.69543 * 21 20 19 23 23 C 1.52998 * 109.50695 * 178.60881 * 21 20 19 24 24 C 1.53000 * 117.50041 * 128.62476 * 23 21 20 25 25 C 1.53000 * 117.49969 * 59.99728 * 23 21 20 26 26 C 1.47012 * 111.00212 * 50.01887 * 17 2 1 27 27 H 1.09001 * 109.47385 * 302.49189 * 1 2 3 28 28 H 1.08997 * 109.47346 * 62.50082 * 1 2 3 29 29 H 1.09004 * 109.46637 * 182.49669 * 1 2 3 30 30 H 1.08996 * 109.47648 * 94.52020 * 7 6 4 31 31 H 1.09000 * 109.47280 * 214.52510 * 7 6 4 32 32 H 1.09002 * 109.46668 * 334.51947 * 7 6 4 33 33 H 1.09003 * 109.47659 * 210.00360 * 8 6 4 34 34 H 1.09008 * 109.46499 * 329.99858 * 8 6 4 35 35 H 0.97005 * 119.99868 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.50276 * 297.53830 * 18 17 2 37 37 H 1.09003 * 109.50996 * 57.62539 * 18 17 2 38 38 H 1.09001 * 109.50315 * 176.78111 * 19 18 17 39 39 H 1.09001 * 109.50636 * 296.86564 * 19 18 17 40 40 H 1.09001 * 115.54598 * 274.33025 * 23 21 20 41 41 H 1.08992 * 117.49837 * 359.97438 * 24 23 21 42 42 H 1.08998 * 117.49700 * 145.02420 * 24 23 21 43 43 H 1.09001 * 117.49965 * 214.97991 * 25 23 21 44 44 H 1.08997 * 117.50026 * 0.02562 * 25 23 21 45 45 H 1.08993 * 109.51011 * 302.33051 * 26 17 2 46 46 H 1.09004 * 109.50228 * 62.46283 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2566 -1.9018 -1.1937 6 7 2.2325 -0.0219 -2.3716 7 6 1.8507 1.3902 -2.4516 8 6 2.8319 -0.6855 -3.5320 9 6 1.7443 -1.2885 -4.3831 10 1 0.7100 -1.1872 -4.0894 11 6 2.0697 -1.9695 -5.5370 12 7 3.3293 -2.0933 -5.8945 13 14 0.7216 -2.7163 -6.5925 14 1 -0.1959 -1.6443 -7.0552 15 1 1.3293 -3.3901 -7.7680 16 1 -0.0404 -3.7089 -5.7928 17 7 2.0197 -0.6925 1.1994 18 6 3.4814 -0.8448 1.1601 19 6 3.9541 -1.5157 2.4525 20 8 3.2831 -2.7693 2.6059 21 6 1.8580 -2.6580 2.6488 22 1 1.5660 -2.0490 3.5043 23 6 1.2403 -4.0517 2.7792 24 6 0.2188 -4.2699 3.8972 25 6 1.6178 -4.8794 4.0094 26 6 1.3639 -1.9986 1.3584 27 1 -0.3634 0.5520 0.8668 28 1 -0.3634 0.4745 -0.9115 29 1 -0.3633 -1.0268 0.0448 30 1 2.7145 2.0138 -2.2213 31 1 1.4985 1.6148 -3.4584 32 1 1.0549 1.5926 -1.7347 33 1 3.3907 0.0434 -4.1190 34 1 3.5060 -1.4721 -3.1926 35 1 3.5582 -2.5721 -6.7065 36 1 3.7600 -1.4624 0.3063 37 1 3.9472 0.1363 1.0671 38 1 5.0302 -1.6825 2.4034 39 1 3.7239 -0.8725 3.3018 40 1 1.0831 -4.5858 1.8421 41 1 -0.0128 -3.4208 4.5400 42 1 -0.6106 -4.9477 3.6957 43 1 1.7086 -5.9581 3.8817 44 1 2.3059 -4.4309 4.7260 45 1 0.2841 -1.8598 1.4109 46 1 1.6088 -2.6347 0.5078 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331429504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:30 Heat of formation + Delta-G solvation = -60.474694 kcal Electronic energy + Delta-G solvation = -25574.480284 eV Core-core repulsion = 22078.653076 eV Total energy + Delta-G solvation = -3495.827208 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.75539 -40.08255 -37.85388 -36.92990 -36.36766 -34.79122 -32.54076 -31.82733 -29.74806 -27.85149 -27.37326 -26.03793 -25.04992 -23.43855 -23.10169 -21.92315 -21.45061 -19.84839 -18.72443 -18.14785 -17.84831 -17.31359 -17.02709 -16.38759 -16.28040 -16.10150 -16.01438 -15.50607 -15.25086 -14.87535 -14.64431 -14.22284 -14.06498 -13.83005 -13.50663 -13.26686 -13.20990 -13.09004 -12.88282 -12.77568 -12.59599 -12.50847 -12.37687 -12.23326 -12.10776 -11.87589 -11.75928 -11.68451 -11.31107 -11.11201 -10.99136 -10.68754 -10.53815 -9.46422 -9.22286 -8.26476 -6.41591 1.32211 1.36747 1.44047 1.73560 2.27628 2.42358 2.48255 2.73528 3.02895 3.21033 3.61792 3.68225 3.87876 3.93918 3.99481 4.14471 4.14839 4.19768 4.26000 4.32010 4.35559 4.43999 4.54492 4.62771 4.66618 4.70525 4.79158 4.81163 4.87981 4.92498 4.93624 4.97292 5.03410 5.10366 5.17274 5.20392 5.27237 5.30180 5.52115 5.75004 5.80810 5.83065 6.01830 6.25773 6.64849 6.75013 7.24255 7.44230 8.80408 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.004261 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.100232 B = 6569.641702 C = 7170.972661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 H 0.130 0.870 4 C 0.470 3.530 5 O -0.587 6.587 6 N -0.609 5.609 7 C 0.074 3.926 8 C 0.262 3.738 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.257 1.257 15 H -0.277 1.277 16 H -0.280 1.280 17 N -0.494 5.494 18 C 0.002 3.998 19 C 0.072 3.928 20 O -0.402 6.402 21 C 0.134 3.866 22 H 0.079 0.921 23 C -0.178 4.178 24 C -0.148 4.148 25 C -0.163 4.163 26 C 0.006 3.994 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.022 0.978 34 H -0.010 1.010 35 H 0.267 0.733 36 H 0.017 0.983 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 6.333 20.016 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.044 4.044 3 H 0.148 0.852 4 C 0.257 3.743 5 O -0.468 6.468 6 N -0.341 5.341 7 C -0.068 4.068 8 C 0.141 3.859 9 C -0.580 4.580 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.206 1.206 17 N -0.217 5.217 18 C -0.127 4.127 19 C -0.005 4.005 20 O -0.321 6.321 21 C 0.077 3.923 22 H 0.096 0.904 23 C -0.197 4.197 24 C -0.185 4.185 25 C -0.200 4.200 26 C -0.122 4.122 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.039 0.961 34 H 0.008 0.992 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.738 5.801 20.308 21.886 hybrid contribution 0.115 -1.014 -2.222 2.445 sum -5.623 4.787 18.086 19.535 Atomic orbital electron populations 1.21887 0.90366 1.02922 1.04510 1.22108 0.98685 0.99215 0.84344 0.85198 1.22590 0.77944 0.87596 0.86130 1.90604 1.53927 1.17379 1.84899 1.48348 1.60333 1.12732 1.12641 1.22009 1.01371 0.79597 1.03841 1.18678 0.92849 0.91640 0.82774 1.21637 0.93456 1.35424 1.07458 0.93014 1.25871 0.98071 0.96217 0.98998 1.70046 1.18549 1.42923 1.25379 0.85481 0.78889 0.78812 0.77714 1.18180 1.20223 1.20561 1.62894 1.05050 1.20037 1.33738 1.22972 0.88970 1.01803 0.98913 1.22697 0.97399 0.84894 0.95514 1.87971 1.19291 1.30928 1.93930 1.21636 0.80211 0.94370 0.96115 0.90370 1.22122 1.06125 0.96548 0.94866 1.23103 0.92659 1.03674 0.99079 1.22875 0.98793 0.99402 0.98960 1.23077 1.00234 0.90426 0.98421 0.87532 0.90826 0.93258 0.91123 0.91574 0.88388 0.96051 0.99216 0.92395 0.96447 0.88154 0.87570 0.90260 0.89543 0.87072 0.87284 0.88349 0.88303 0.88463 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.45 71.98 0.61 -2.69 16 2 C 0.07 1.97 2.12 44.17 0.09 2.06 16 3 H 0.13 2.95 6.88 -2.39 -0.02 2.94 16 4 C 0.47 19.63 5.79 87.66 0.51 20.13 16 5 O -0.59 -30.86 12.06 -3.02 -0.04 -30.90 16 6 N -0.61 -26.09 2.86 -851.12 -2.43 -28.52 16 7 C 0.07 2.18 9.88 127.77 1.26 3.44 16 8 C 0.26 14.50 5.14 85.63 0.44 14.94 16 9 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 10 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 11 C 0.01 0.43 5.46 84.66 0.46 0.90 16 12 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 13 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 17 N -0.49 -14.16 4.80 -874.36 -4.20 -18.36 16 18 C 0.00 0.05 5.17 86.31 0.45 0.50 16 19 C 0.07 1.82 7.01 72.02 0.50 2.33 16 20 O -0.40 -12.41 10.38 -148.98 -1.55 -13.95 16 21 C 0.13 3.64 3.00 30.63 0.09 3.73 16 22 H 0.08 1.81 7.90 -2.39 -0.02 1.79 16 23 C -0.18 -4.46 5.40 -10.79 -0.06 -4.52 16 24 C -0.15 -2.59 10.18 30.60 0.31 -2.27 16 25 C -0.16 -3.31 10.16 30.60 0.31 -3.00 16 26 C 0.01 0.20 4.04 86.32 0.35 0.55 16 27 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.67 6.95 -2.39 -0.02 1.65 16 29 H 0.05 1.35 6.11 -2.38 -0.01 1.33 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.06 8.11 -2.39 -0.02 2.05 16 32 H 0.10 2.15 5.19 -2.39 -0.01 2.14 16 33 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 34 H -0.01 -0.66 7.50 -2.38 -0.02 -0.68 16 35 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 36 H 0.02 0.70 6.01 -2.39 -0.01 0.69 16 37 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 2.55 8.11 -2.39 -0.02 2.53 16 41 H 0.11 1.59 8.05 -2.39 -0.02 1.57 16 42 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 43 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.10 2.68 5.99 -2.39 -0.01 2.67 16 46 H 0.04 1.72 5.50 -2.38 -0.01 1.70 16 Total: -1.00 -77.80 357.06 0.62 -77.18 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.96 Total: 19.47 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.57 Total: 4.46 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -6.34 Total: -103.99 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.58 Total: -44.86 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.80 0.62 -77.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331429504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.704 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds