Wall clock time and date at job start Tue Mar 31 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47172 * 2 1 4 4 C 1.50703 * 109.47022 * 240.00142 * 2 1 3 5 5 O 1.21281 * 119.99837 * 240.00048 * 4 2 1 6 6 N 1.34781 * 120.00021 * 59.99685 * 4 2 1 7 7 C 1.46504 * 119.99832 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99786 * 179.97438 * 6 4 2 9 9 C 1.50701 * 109.46992 * 90.00095 * 8 6 4 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 N 1.46902 * 109.47260 * 120.00156 * 2 1 3 18 18 C 1.49623 * 110.99939 * 179.87485 * 17 2 1 19 19 C 1.50359 * 104.82970 * 114.66050 * 18 17 2 20 20 H 1.08999 * 110.05682 * 278.92650 * 19 18 17 21 21 C 1.51017 * 125.48560 * 144.39300 * 19 18 17 22 22 C 1.57477 * 101.10732 * 203.37363 * 21 19 18 23 23 C 1.55938 * 105.70420 * 25.58662 * 22 21 19 24 24 H 1.08997 * 110.60908 * 248.40401 * 23 22 21 25 25 O 1.42901 * 110.48954 * 125.79995 * 23 22 21 26 26 C 1.50302 * 104.16246 * 7.13004 * 23 22 21 27 27 H 1.09004 * 109.99012 * 80.52265 * 26 23 22 28 28 C 1.50105 * 110.99647 * 299.68765 * 17 2 1 29 29 H 1.09000 * 109.46945 * 299.99836 * 1 2 3 30 30 H 1.08998 * 109.47392 * 59.99794 * 1 2 3 31 31 H 1.09001 * 109.46662 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46899 * 269.99516 * 7 6 4 33 33 H 1.08992 * 109.47334 * 29.99480 * 7 6 4 34 34 H 1.08994 * 109.46680 * 150.00103 * 7 6 4 35 35 H 1.09002 * 109.47391 * 330.00086 * 8 6 4 36 36 H 1.09001 * 109.46813 * 210.00142 * 8 6 4 37 37 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 38 38 H 1.08995 * 110.36485 * 233.50037 * 18 17 2 39 39 H 1.09006 * 110.36573 * 355.82444 * 18 17 2 40 40 H 1.09003 * 110.99905 * 322.00985 * 21 19 18 41 41 H 1.08998 * 111.00282 * 85.86031 * 21 19 18 42 42 H 1.08996 * 110.55220 * 266.36274 * 22 21 19 43 43 H 1.08996 * 109.96303 * 144.50140 * 22 21 19 44 44 H 0.96691 * 114.00218 * 65.25933 * 25 23 22 45 45 H 1.08997 * 110.85652 * 331.32826 * 28 17 2 46 46 H 1.08997 * 110.84836 * 94.96302 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8648 0.9415 -2.5890 8 6 2.1955 -0.9402 -3.6508 9 6 1.2033 -1.9977 -4.0611 10 1 0.2989 -2.1410 -3.4885 11 6 1.4497 -2.7816 -5.1683 12 7 2.5508 -2.6068 -5.8659 13 14 0.2195 -4.0919 -5.6774 14 1 -1.0887 -3.4545 -5.9732 15 1 0.7151 -4.7918 -6.8898 16 1 0.0546 -5.0716 -4.5736 17 7 2.0197 -0.6925 1.1994 18 6 3.5154 -0.7151 1.2324 19 6 3.8867 0.1208 2.4258 20 1 3.8505 1.1790 2.1669 21 6 5.0537 -0.1382 3.3487 22 6 4.5786 0.6035 4.6541 23 6 3.0207 0.6190 4.5874 24 1 2.6532 1.6343 4.4382 25 8 2.4635 0.0564 5.7769 26 6 2.6950 -0.2387 3.3969 27 1 2.7451 -1.2923 3.6719 28 6 1.5447 -0.0075 2.4477 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.1832 0.6440 -2.6222 33 1 1.0287 1.6002 -1.7362 34 1 1.1227 1.4667 -3.5086 35 1 3.1559 -1.4078 -3.4336 36 1 2.3164 -0.2213 -4.4612 37 1 2.7243 -3.1586 -6.6446 38 1 3.8767 -1.7359 1.3570 39 1 3.9217 -0.2765 0.3209 40 1 5.1881 -1.2066 3.5181 41 1 5.9669 0.3121 2.9596 42 1 4.9642 1.6227 4.6770 43 1 4.9118 0.0557 5.5355 44 1 2.6432 0.5697 6.5764 45 1 1.3945 1.0578 2.2725 46 1 0.6329 -0.4725 2.8224 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331450545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:09 Heat of formation + Delta-G solvation = -54.545678 kcal Electronic energy + Delta-G solvation = -25227.740403 eV Core-core repulsion = 21732.170296 eV Total energy + Delta-G solvation = -3495.570107 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79682 -39.06499 -36.90551 -34.88372 -34.75764 -32.71843 -31.49460 -29.90762 -27.99971 -27.14652 -26.11112 -25.73899 -23.81746 -22.62838 -21.04077 -20.46227 -20.10620 -18.23744 -17.34861 -16.52830 -16.43158 -16.12511 -15.76818 -15.08300 -14.88854 -14.43112 -14.37725 -14.00614 -13.79614 -13.14087 -13.08467 -12.88358 -12.61960 -12.35974 -12.31610 -12.07209 -11.99353 -11.72064 -11.58142 -11.39891 -11.27174 -11.14422 -10.95195 -10.82317 -10.78356 -10.64989 -10.51197 -10.21982 -10.14135 -10.09634 -9.59375 -8.76676 -8.39606 -8.13178 -7.59165 -6.00714 -4.04977 3.34971 3.39257 3.40008 3.47428 3.65018 3.77161 4.04238 4.18911 4.46426 4.49659 4.71898 4.87581 4.91577 4.99591 5.07492 5.18169 5.25603 5.33558 5.35067 5.36547 5.45473 5.48072 5.54387 5.64384 5.72828 5.79772 5.85703 5.86175 5.90303 5.94739 5.98025 6.08484 6.18358 6.19381 6.37345 6.45374 6.93053 6.98764 7.18550 7.38662 7.46505 7.59078 7.96005 8.27420 8.45685 8.94674 9.16425 9.59999 11.07386 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027842 B = 0.003393 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.437049 B = 8250.704686 C = 8431.646251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 H 0.056 0.944 4 C 0.510 3.490 5 O -0.523 6.523 6 N -0.604 5.604 7 C 0.084 3.916 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.897 5.897 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.501 5.501 18 C 0.072 3.928 19 C -0.133 4.133 20 H 0.070 0.930 21 C -0.100 4.100 22 C -0.154 4.154 23 C 0.118 3.882 24 H 0.059 0.941 25 O -0.562 6.562 26 C -0.112 4.112 27 H 0.095 0.905 28 C 0.060 3.940 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.375 0.625 45 H 0.047 0.953 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 12.352 19.880 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.053 4.053 3 H 0.073 0.927 4 C 0.295 3.705 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.060 4.060 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.226 5.226 18 C -0.055 4.055 19 C -0.153 4.153 20 H 0.088 0.912 21 C -0.138 4.138 22 C -0.192 4.192 23 C 0.059 3.941 24 H 0.077 0.923 25 O -0.368 6.368 26 C -0.131 4.131 27 H 0.113 0.887 28 C -0.067 4.067 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.221 0.779 45 H 0.065 0.935 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.638 10.776 19.260 22.079 hybrid contribution -0.232 0.659 -0.068 0.702 sum 0.407 11.434 19.192 22.344 Atomic orbital electron populations 1.22026 0.92501 1.03844 1.02544 1.21780 0.97236 0.95569 0.90730 0.92669 1.20051 0.81403 0.85108 0.83962 1.90672 1.37828 1.25415 1.85910 1.48116 1.50175 1.28117 1.07291 1.21763 0.95225 0.87680 1.01320 1.19273 0.95995 0.91851 0.80027 1.21402 1.05946 1.17892 1.11064 0.92507 1.24931 0.95617 0.97289 0.96287 1.69923 1.24915 1.40320 1.18429 0.86562 0.81162 0.81831 0.77891 1.20275 1.21216 1.20127 1.64972 1.08350 1.49450 0.99794 1.22002 0.87126 1.00676 0.95717 1.22559 0.96110 1.00653 0.95970 0.91158 1.21899 0.97042 1.01029 0.93815 1.23869 0.95397 1.00840 0.99094 1.21725 0.91933 0.95805 0.84633 0.92302 1.86607 1.78623 1.54138 1.17390 1.22070 0.96057 1.02050 0.92966 0.88694 1.22343 0.97689 0.97036 0.89617 0.92313 0.90441 0.91156 0.92848 0.92714 0.91544 0.93941 0.95119 0.92716 0.89641 0.91727 0.90615 0.91325 0.91268 0.90714 0.77864 0.93455 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.74 37.16 0.32 -1.78 16 2 C 0.06 0.94 1.38 -68.86 -0.09 0.85 16 3 H 0.06 0.78 7.37 -51.93 -0.38 0.40 16 4 C 0.51 10.85 6.42 -10.98 -0.07 10.77 16 5 O -0.52 -13.37 14.30 5.56 0.08 -13.29 16 6 N -0.60 -12.97 2.86 -182.95 -0.52 -13.49 16 7 C 0.08 1.34 8.85 59.85 0.53 1.87 16 8 C 0.25 6.57 5.20 -5.19 -0.03 6.54 16 9 C -0.52 -15.14 9.39 -34.44 -0.32 -15.46 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 N -0.50 -7.87 4.93 -225.72 -1.11 -8.98 16 18 C 0.07 1.10 5.22 -3.62 -0.02 1.08 16 19 C -0.13 -1.53 2.75 -90.26 -0.25 -1.78 16 20 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.10 -0.96 6.78 -25.29 -0.17 -1.13 16 22 C -0.15 -1.21 6.79 -22.72 -0.15 -1.37 16 23 C 0.12 1.07 4.11 -26.51 -0.11 0.96 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 O -0.56 -5.23 13.31 -35.23 -0.47 -5.70 16 26 C -0.11 -1.29 2.49 -90.34 -0.23 -1.51 16 27 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 28 C 0.06 0.74 5.22 -3.07 -0.02 0.72 16 29 H 0.06 0.66 7.14 -51.93 -0.37 0.29 16 30 H 0.08 1.00 4.53 -51.93 -0.24 0.77 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.82 6.95 -51.93 -0.36 0.46 16 33 H 0.05 0.69 6.01 -51.93 -0.31 0.38 16 34 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.06 1.10 6.65 -51.93 -0.35 0.75 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.56 8.01 -51.93 -0.42 0.14 16 44 H 0.37 1.74 9.12 45.56 0.42 2.16 16 45 H 0.05 0.51 7.77 -51.93 -0.40 0.11 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -34.52 354.49 -8.63 -43.16 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.97 Total: 0.55 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.70 Total: 1.43 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.90 Total: -48.73 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.39 Total: -18.99 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.52 -8.63 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331450545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.387 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds