Wall clock time and date at job start Tue Mar 31 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47172 * 2 1 4 4 C 1.50703 * 109.47022 * 240.00142 * 2 1 3 5 5 O 1.21281 * 119.99837 * 240.00048 * 4 2 1 6 6 N 1.34781 * 120.00021 * 59.99685 * 4 2 1 7 7 C 1.46504 * 119.99832 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99786 * 179.97438 * 6 4 2 9 9 C 1.50701 * 109.46992 * 90.00095 * 8 6 4 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 N 1.46902 * 109.47260 * 120.00156 * 2 1 3 18 18 C 1.49623 * 110.99939 * 179.87485 * 17 2 1 19 19 C 1.50359 * 104.82970 * 114.66050 * 18 17 2 20 20 H 1.08999 * 110.05682 * 278.92650 * 19 18 17 21 21 C 1.51017 * 125.48560 * 144.39300 * 19 18 17 22 22 C 1.57477 * 101.10732 * 203.37363 * 21 19 18 23 23 C 1.55938 * 105.70420 * 25.58662 * 22 21 19 24 24 H 1.08997 * 110.60908 * 248.40401 * 23 22 21 25 25 O 1.42901 * 110.48954 * 125.79995 * 23 22 21 26 26 C 1.50302 * 104.16246 * 7.13004 * 23 22 21 27 27 H 1.09004 * 109.99012 * 80.52265 * 26 23 22 28 28 C 1.50105 * 110.99647 * 299.68765 * 17 2 1 29 29 H 1.09000 * 109.46945 * 299.99836 * 1 2 3 30 30 H 1.08998 * 109.47392 * 59.99794 * 1 2 3 31 31 H 1.09001 * 109.46662 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46899 * 269.99516 * 7 6 4 33 33 H 1.08992 * 109.47334 * 29.99480 * 7 6 4 34 34 H 1.08994 * 109.46680 * 150.00103 * 7 6 4 35 35 H 1.09002 * 109.47391 * 330.00086 * 8 6 4 36 36 H 1.09001 * 109.46813 * 210.00142 * 8 6 4 37 37 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 38 38 H 1.08995 * 110.36485 * 233.50037 * 18 17 2 39 39 H 1.09006 * 110.36573 * 355.82444 * 18 17 2 40 40 H 1.09003 * 110.99905 * 322.00985 * 21 19 18 41 41 H 1.08998 * 111.00282 * 85.86031 * 21 19 18 42 42 H 1.08996 * 110.55220 * 266.36274 * 22 21 19 43 43 H 1.08996 * 109.96303 * 144.50140 * 22 21 19 44 44 H 0.96691 * 114.00218 * 65.25933 * 25 23 22 45 45 H 1.08997 * 110.85652 * 331.32826 * 28 17 2 46 46 H 1.08997 * 110.84836 * 94.96302 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8648 0.9415 -2.5890 8 6 2.1955 -0.9402 -3.6508 9 6 1.2033 -1.9977 -4.0611 10 1 0.2989 -2.1410 -3.4885 11 6 1.4497 -2.7816 -5.1683 12 7 2.5508 -2.6068 -5.8659 13 14 0.2195 -4.0919 -5.6774 14 1 -1.0887 -3.4545 -5.9732 15 1 0.7151 -4.7918 -6.8898 16 1 0.0546 -5.0716 -4.5736 17 7 2.0197 -0.6925 1.1994 18 6 3.5154 -0.7151 1.2324 19 6 3.8867 0.1208 2.4258 20 1 3.8505 1.1790 2.1669 21 6 5.0537 -0.1382 3.3487 22 6 4.5786 0.6035 4.6541 23 6 3.0207 0.6190 4.5874 24 1 2.6532 1.6343 4.4382 25 8 2.4635 0.0564 5.7769 26 6 2.6950 -0.2387 3.3969 27 1 2.7451 -1.2923 3.6719 28 6 1.5447 -0.0075 2.4477 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.1832 0.6440 -2.6222 33 1 1.0287 1.6002 -1.7362 34 1 1.1227 1.4667 -3.5086 35 1 3.1559 -1.4078 -3.4336 36 1 2.3164 -0.2213 -4.4612 37 1 2.7243 -3.1586 -6.6446 38 1 3.8767 -1.7359 1.3570 39 1 3.9217 -0.2765 0.3209 40 1 5.1881 -1.2066 3.5181 41 1 5.9669 0.3121 2.9596 42 1 4.9642 1.6227 4.6770 43 1 4.9118 0.0557 5.5355 44 1 2.6432 0.5697 6.5764 45 1 1.3945 1.0578 2.2725 46 1 0.6329 -0.4725 2.8224 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331450545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:08 Heat of formation + Delta-G solvation = -81.752402 kcal Electronic energy + Delta-G solvation = -25228.920175 eV Core-core repulsion = 21732.170296 eV Total energy + Delta-G solvation = -3496.749879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85579 -40.50965 -37.85825 -36.60392 -35.81442 -34.75274 -32.72269 -30.87132 -29.76371 -28.30841 -27.52840 -26.76253 -25.49282 -24.03339 -22.24443 -21.45642 -20.94174 -19.79590 -18.68535 -18.18138 -17.80620 -17.24997 -17.00210 -16.61581 -16.12769 -16.04440 -15.64706 -15.10614 -14.91311 -14.68664 -14.19161 -14.04418 -13.93313 -13.58927 -13.48486 -13.38534 -13.21396 -13.13669 -13.05416 -12.88957 -12.64860 -12.50938 -12.38371 -12.35527 -12.15659 -11.92316 -11.71599 -11.65934 -11.46825 -11.06414 -10.81860 -10.64904 -10.44376 -9.40982 -9.29866 -8.23122 -6.37712 1.34938 1.39932 1.46890 1.83040 2.23632 2.39536 2.82409 2.97670 3.06175 3.35498 3.63150 3.73684 3.92118 4.01843 4.02884 4.10718 4.17552 4.27592 4.36179 4.40495 4.49357 4.58215 4.60960 4.68116 4.70189 4.75553 4.83264 4.88203 4.94900 4.97578 5.02157 5.05420 5.08925 5.15671 5.20711 5.28763 5.31355 5.40634 5.55824 5.80701 5.82507 5.99475 6.06044 6.69675 6.79663 6.97455 7.28130 7.51038 8.83688 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027842 B = 0.003393 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.437049 B = 8250.704686 C = 8431.646251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 H 0.087 0.913 4 C 0.498 3.502 5 O -0.581 6.581 6 N -0.610 5.610 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.542 4.542 10 H 0.051 0.949 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.277 1.277 16 H -0.280 1.280 17 N -0.530 5.530 18 C 0.075 3.925 19 C -0.126 4.126 20 H 0.088 0.912 21 C -0.104 4.104 22 C -0.143 4.143 23 C 0.123 3.877 24 H 0.082 0.918 25 O -0.582 6.582 26 C -0.108 4.108 27 H 0.064 0.936 28 C 0.064 3.936 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.071 0.929 35 H -0.006 1.006 36 H 0.025 0.975 37 H 0.267 0.733 38 H 0.051 0.949 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.395 0.605 45 H 0.075 0.925 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 14.829 21.685 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 H 0.104 0.896 4 C 0.286 3.714 5 O -0.460 6.460 6 N -0.342 5.342 7 C -0.064 4.064 8 C 0.141 3.859 9 C -0.581 4.581 10 H 0.069 0.931 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.183 1.183 15 H -0.202 1.202 16 H -0.206 1.206 17 N -0.256 5.256 18 C -0.052 4.052 19 C -0.146 4.146 20 H 0.106 0.894 21 C -0.142 4.142 22 C -0.181 4.181 23 C 0.064 3.936 24 H 0.100 0.900 25 O -0.391 6.391 26 C -0.127 4.127 27 H 0.083 0.917 28 C -0.062 4.062 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.013 0.987 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.246 0.754 45 H 0.093 0.907 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.136 13.311 21.095 24.970 hybrid contribution 0.357 -0.145 -0.622 0.731 sum -0.779 13.167 20.473 24.354 Atomic orbital electron populations 1.22042 0.90490 1.02845 1.04950 1.21701 0.98447 0.95830 0.87899 0.89609 1.21170 0.80236 0.84683 0.85346 1.90638 1.40281 1.28242 1.86859 1.48133 1.50721 1.29388 1.06006 1.22095 0.94685 0.86048 1.03622 1.18733 0.93719 0.91588 0.81879 1.21674 1.06136 1.18952 1.11332 0.93060 1.25856 0.97571 0.99487 0.96246 1.70040 1.26599 1.41363 1.18865 0.85487 0.79347 0.78681 0.77413 1.18251 1.20187 1.20619 1.64869 1.08395 1.51206 1.01107 1.21778 0.87484 0.99409 0.96529 1.22448 0.97266 1.00473 0.94371 0.89419 1.21958 0.96914 1.00683 0.94685 1.23817 0.94616 1.01863 0.97779 1.21692 0.92452 0.95892 0.83534 0.90037 1.86556 1.78834 1.55262 1.18434 1.22027 0.95540 1.01026 0.94151 0.91727 1.22387 0.97716 0.98209 0.87877 0.88678 0.89187 0.93881 0.91771 0.88456 0.91029 0.98747 0.95693 0.92391 0.93010 0.94192 0.92142 0.90388 0.88918 0.90215 0.75447 0.90668 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.74 71.98 0.63 -3.04 16 2 C 0.07 2.24 1.38 44.17 0.06 2.30 16 3 H 0.09 2.12 7.37 -2.39 -0.02 2.10 16 4 C 0.50 21.78 6.42 87.66 0.56 22.34 16 5 O -0.58 -31.75 14.30 -3.03 -0.04 -31.80 16 6 N -0.61 -26.64 2.86 -851.13 -2.43 -29.07 16 7 C 0.08 2.31 8.85 127.77 1.13 3.44 16 8 C 0.26 14.56 5.20 85.63 0.45 15.01 16 9 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 10 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 11 C 0.01 0.43 5.46 84.66 0.46 0.89 16 12 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 13 Si 0.97 46.16 29.54 68.60 2.03 48.18 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 17 N -0.53 -16.57 4.93 -868.03 -4.28 -20.85 16 18 C 0.08 2.41 5.22 84.92 0.44 2.85 16 19 C -0.13 -2.77 2.75 -10.56 -0.03 -2.80 16 20 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 21 C -0.10 -1.89 6.78 31.53 0.21 -1.68 16 22 C -0.14 -1.82 6.79 33.19 0.23 -1.59 16 23 C 0.12 1.83 4.11 30.74 0.13 1.96 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 O -0.58 -9.23 13.31 -148.98 -1.98 -11.21 16 26 C -0.11 -2.31 2.49 -10.61 -0.03 -2.34 16 27 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 28 C 0.06 1.42 5.22 85.00 0.44 1.87 16 29 H 0.09 1.72 7.14 -2.39 -0.02 1.70 16 30 H 0.09 2.03 4.53 -2.39 -0.01 2.01 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.80 6.95 -2.39 -0.02 1.79 16 33 H 0.10 2.07 6.01 -2.39 -0.01 2.06 16 34 H 0.07 2.07 7.89 -2.39 -0.02 2.05 16 35 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 36 H 0.03 1.39 7.89 -2.39 -0.02 1.37 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.04 1.44 6.65 -2.38 -0.02 1.42 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.96 8.01 -2.39 -0.02 0.94 16 44 H 0.40 2.39 9.12 -74.06 -0.68 1.71 16 45 H 0.08 1.28 7.77 -2.39 -0.02 1.26 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -80.69 354.49 -1.21 -81.90 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.29 Total: 12.80 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 4.93 Total: 7.20 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -6.43 Total: -107.07 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -2.03 Total: -43.01 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -80.69 -1.21 -81.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331450545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.150 kcal (2) G-P(sol) polarization free energy of solvation -80.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds