Wall clock time and date at job start Tue Mar 31 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00264 * 2 1 4 4 H 1.09003 * 110.76301 * 31.74362 * 3 2 1 5 5 C 1.55137 * 110.70925 * 154.94642 * 3 2 1 6 6 C 1.54906 * 101.65493 * 154.03691 * 5 3 2 7 7 H 1.08999 * 110.37401 * 81.75910 * 6 5 3 8 8 C 1.50697 * 110.47070 * 204.05288 * 6 5 3 9 9 O 1.21286 * 119.99802 * 91.91519 * 8 6 5 10 10 N 1.34766 * 120.00340 * 271.91833 * 8 6 5 11 11 C 1.46508 * 120.00043 * 5.15920 * 10 8 6 12 12 C 1.50695 * 109.47200 * 89.99994 * 11 10 8 13 13 H 1.07998 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99826 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99748 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00060 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47165 * 90.00157 * 16 14 12 18 18 H 1.48502 * 109.46982 * 210.00035 * 16 14 12 19 19 H 1.48497 * 109.46889 * 329.99663 * 16 14 12 20 20 C 1.46497 * 120.00643 * 185.16142 * 10 8 6 21 21 C 1.52998 * 109.47447 * 94.94931 * 20 10 8 22 22 C 1.52996 * 117.50293 * 243.24507 * 21 20 10 23 23 C 1.52999 * 60.00137 * 252.50900 * 22 21 20 24 24 N 1.47847 * 104.79351 * 322.93158 * 6 5 3 25 25 C 1.46903 * 111.00130 * 146.36443 * 24 6 5 26 26 C 1.47441 * 108.57042 * 24.09460 * 24 6 5 27 27 H 1.09006 * 109.47158 * 60.00223 * 1 2 3 28 28 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 300.00015 * 1 2 3 30 30 H 1.08999 * 110.99124 * 35.94756 * 5 3 2 31 31 H 1.08996 * 111.02334 * 272.14460 * 5 3 2 32 32 H 1.08998 * 109.47286 * 210.00921 * 11 10 8 33 33 H 1.09005 * 109.46643 * 330.00010 * 11 10 8 34 34 H 0.97001 * 119.99793 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47414 * 214.95273 * 20 10 8 36 36 H 1.09005 * 109.47000 * 334.95257 * 20 10 8 37 37 H 1.09005 * 115.54514 * 28.95025 * 21 20 10 38 38 H 1.09001 * 117.49740 * 359.97438 * 22 21 20 39 39 H 1.09006 * 117.50278 * 145.01524 * 22 21 20 40 40 H 1.08999 * 117.49527 * 252.51125 * 23 22 21 41 41 H 1.08993 * 117.51912 * 107.47552 * 23 22 21 42 42 H 1.09004 * 109.46758 * 299.03400 * 25 24 6 43 43 H 1.09002 * 109.46931 * 59.02696 * 25 24 6 44 44 H 1.08990 * 109.47338 * 179.02914 * 25 24 6 45 45 H 1.09000 * 109.89079 * 118.41256 * 26 24 6 46 46 H 1.08998 * 109.89220 * 239.60627 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3756 2.0110 0.5362 5 6 3.4343 1.2719 0.6145 6 6 4.0984 2.4940 -0.0675 7 1 3.8239 3.4130 0.4503 8 6 5.5966 2.3343 -0.0920 9 8 6.1359 1.8183 -1.0480 10 7 6.3373 2.7647 0.9483 11 6 5.6801 3.2841 2.1503 12 6 5.4357 2.1543 3.1172 13 1 5.7399 1.1499 2.8621 14 6 4.8238 2.4029 4.3274 15 7 4.6109 1.4170 5.1714 16 14 4.2970 4.1401 4.7683 17 1 2.9066 4.3696 4.3001 18 1 4.3589 4.3172 6.2415 19 1 5.2069 5.1143 4.1140 20 6 7.7997 2.7134 0.8775 21 6 8.3353 4.0668 0.4062 22 6 9.0850 4.1045 -0.9270 23 6 9.8532 4.2582 0.3872 24 7 3.5585 2.4977 -1.4439 25 6 3.4064 3.8698 -1.9460 26 6 2.2656 1.7890 -1.4431 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9515 0.3492 0.3513 31 1 3.3966 1.4010 1.6961 32 1 6.3192 4.0321 2.6195 33 1 4.7287 3.7398 1.8760 34 1 4.1801 1.5919 6.0227 35 1 8.2036 2.4864 1.8641 36 1 8.1023 1.9379 0.1738 37 1 7.7223 4.9305 0.6638 38 1 9.1970 3.1650 -1.4682 39 1 8.9652 4.9931 -1.5469 40 1 10.2388 5.2478 0.6320 41 1 10.4701 3.4199 0.7108 42 1 2.7080 4.4140 -1.3103 43 1 4.3746 4.3705 -1.9339 44 1 3.0240 3.8430 -2.9663 45 1 1.4707 2.4674 -1.7529 46 1 2.3108 0.9343 -2.1180 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331831834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:16 Heat of formation + Delta-G solvation = -35.500920 kcal Electronic energy + Delta-G solvation = -25659.720387 eV Core-core repulsion = 22164.976123 eV Total energy + Delta-G solvation = -3494.744264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.94890 -38.44985 -37.05551 -36.26698 -34.74827 -32.46216 -31.31015 -29.32985 -28.19677 -26.61519 -26.23133 -24.99113 -22.63873 -22.14371 -21.83581 -20.83946 -20.11537 -18.22297 -17.17599 -16.99513 -16.21882 -16.04342 -15.47192 -14.89624 -14.81686 -14.43893 -14.30426 -14.15479 -13.97159 -13.57622 -13.20164 -13.02664 -12.59844 -12.32288 -12.17066 -12.14442 -11.76439 -11.67220 -11.42102 -11.40888 -11.29683 -11.10732 -10.89841 -10.86958 -10.67800 -10.55367 -10.37369 -10.14743 -9.64397 -9.59626 -9.48309 -9.01438 -8.74613 -8.02075 -7.70302 -6.23406 -4.24181 3.11999 3.21445 3.22889 3.30414 3.61388 3.91416 4.07505 4.23049 4.41965 4.73846 4.97871 5.05292 5.07018 5.14295 5.20282 5.27429 5.31812 5.39442 5.41546 5.43897 5.49835 5.55982 5.65513 5.71221 5.75019 5.81636 5.86921 5.97053 6.09175 6.10141 6.12783 6.23848 6.33175 6.41577 6.46440 6.60082 6.64161 6.72133 7.04091 7.19835 7.35009 7.39429 7.44318 8.16003 8.42546 8.83822 9.04445 9.35910 10.88822 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.010078 B = 0.007079 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.745124 B = 3954.320474 C = 5906.103115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.067 3.933 4 H 0.069 0.931 5 C -0.105 4.105 6 C 0.061 3.939 7 H 0.077 0.923 8 C 0.533 3.467 9 O -0.542 6.542 10 N -0.592 5.592 11 C 0.207 3.793 12 C -0.537 4.537 13 H 0.081 0.919 14 C 0.078 3.922 15 N -0.887 5.887 16 Si 0.865 3.135 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.150 3.850 21 C -0.162 4.162 22 C -0.176 4.176 23 C -0.179 4.179 24 N -0.508 5.508 25 C 0.023 3.977 26 C 0.025 3.975 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.025 0.975 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 5.679 -9.535 11.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.008 3.992 4 H 0.087 0.913 5 C -0.143 4.143 6 C -0.050 4.050 7 H 0.095 0.905 8 C 0.320 3.680 9 O -0.419 6.419 10 N -0.323 5.323 11 C 0.086 3.914 12 C -0.575 4.575 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.525 5.525 16 Si 0.692 3.308 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.189 1.189 20 C 0.026 3.974 21 C -0.181 4.181 22 C -0.213 4.213 23 C -0.217 4.217 24 N -0.234 5.234 25 C -0.126 4.126 26 C -0.103 4.103 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.642 4.937 -10.178 11.617 hybrid contribution -1.209 1.738 1.069 2.372 sum -3.852 6.675 -9.110 11.932 Atomic orbital electron populations 1.22774 0.81625 1.02588 0.99699 1.87979 1.19169 1.26975 1.94784 1.23463 0.95661 0.84856 0.95210 0.91316 1.22733 0.91791 0.97488 1.02328 1.22436 0.93727 1.00050 0.88741 0.90530 1.19950 0.88211 0.77818 0.82038 1.90591 1.73240 1.43453 1.34617 1.47817 1.05478 1.62473 1.16539 1.19829 0.92775 0.95715 0.83097 1.21381 1.40107 0.95583 1.00444 0.90077 1.24857 0.95231 0.96528 0.95992 1.69891 1.42111 1.31316 1.09146 0.87017 0.79611 0.85733 0.78436 1.20025 1.20847 1.18868 1.20847 0.80462 0.94214 1.01875 1.22797 0.93928 1.00341 1.01036 1.22973 1.04648 1.02951 0.90722 1.22903 0.94306 1.02559 1.01926 1.63100 1.23332 1.15443 1.21481 1.22548 1.01248 0.88921 0.99855 1.23353 0.89896 0.99180 0.97857 0.94390 0.89736 0.94029 0.89504 0.86801 0.94862 0.95649 0.92380 0.89985 0.90225 0.88085 0.88645 0.89552 0.89209 0.88789 0.95687 0.91382 0.91315 0.92845 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.88 101.05 1.10 1.45 16 2 O -0.37 -5.99 10.43 -35.23 -0.37 -6.35 16 3 C 0.07 1.07 3.39 -24.91 -0.08 0.98 16 4 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 5 C -0.11 -2.02 6.08 -24.60 -0.15 -2.17 16 6 C 0.06 1.14 2.04 -67.34 -0.14 1.01 16 7 H 0.08 1.38 5.86 -51.93 -0.30 1.07 16 8 C 0.53 11.18 6.92 -10.99 -0.08 11.11 16 9 O -0.54 -12.61 16.13 5.55 0.09 -12.52 16 10 N -0.59 -12.08 2.46 -175.06 -0.43 -12.51 16 11 C 0.21 4.46 4.14 -5.19 -0.02 4.44 16 12 C -0.54 -13.59 8.53 -34.44 -0.29 -13.88 16 13 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 14 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.89 -25.07 13.96 55.43 0.77 -24.29 16 16 Si 0.87 19.23 27.47 -169.99 -4.67 14.56 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 20 C 0.15 2.74 5.78 -4.04 -0.02 2.72 16 21 C -0.16 -2.53 6.01 -90.62 -0.54 -3.07 16 22 C -0.18 -2.46 10.18 -26.73 -0.27 -2.73 16 23 C -0.18 -2.32 10.25 -26.73 -0.27 -2.59 16 24 N -0.51 -8.59 4.73 -232.98 -1.10 -9.70 16 25 C 0.02 0.32 9.12 60.07 0.55 0.86 16 26 C 0.03 0.38 6.67 -2.84 -0.02 0.36 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 30 H 0.09 1.83 8.05 -51.93 -0.42 1.41 16 31 H 0.11 2.42 6.82 -51.93 -0.35 2.06 16 32 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.03 0.53 5.24 -51.93 -0.27 0.26 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 35 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 36 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 37 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.10 1.39 8.03 -51.93 -0.42 0.98 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.31 8.11 -51.93 -0.42 -0.11 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.66 7.58 -51.93 -0.39 0.26 16 46 H 0.09 1.34 8.06 -51.93 -0.42 0.92 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -29.90 368.85 -8.45 -38.35 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.95 Total: 6.51 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.35 Total: 0.40 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.76 Total: -46.51 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.28 Total: -18.87 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.67 Total: 14.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.90 -8.45 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331831834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.848 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds