Wall clock time and date at job start Tue Mar 31 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00264 * 2 1 4 4 H 1.09003 * 110.76301 * 31.74362 * 3 2 1 5 5 C 1.55137 * 110.70925 * 154.94642 * 3 2 1 6 6 C 1.54906 * 101.65493 * 154.03691 * 5 3 2 7 7 H 1.08999 * 110.37401 * 81.75910 * 6 5 3 8 8 C 1.50697 * 110.47070 * 204.05288 * 6 5 3 9 9 O 1.21286 * 119.99802 * 91.91519 * 8 6 5 10 10 N 1.34766 * 120.00340 * 271.91833 * 8 6 5 11 11 C 1.46508 * 120.00043 * 5.15920 * 10 8 6 12 12 C 1.50695 * 109.47200 * 89.99994 * 11 10 8 13 13 H 1.07998 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99826 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99748 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00060 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47165 * 90.00157 * 16 14 12 18 18 H 1.48502 * 109.46982 * 210.00035 * 16 14 12 19 19 H 1.48497 * 109.46889 * 329.99663 * 16 14 12 20 20 C 1.46497 * 120.00643 * 185.16142 * 10 8 6 21 21 C 1.52998 * 109.47447 * 94.94931 * 20 10 8 22 22 C 1.52996 * 117.50293 * 243.24507 * 21 20 10 23 23 C 1.52999 * 60.00137 * 252.50900 * 22 21 20 24 24 N 1.47847 * 104.79351 * 322.93158 * 6 5 3 25 25 C 1.46903 * 111.00130 * 146.36443 * 24 6 5 26 26 C 1.47441 * 108.57042 * 24.09460 * 24 6 5 27 27 H 1.09006 * 109.47158 * 60.00223 * 1 2 3 28 28 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 300.00015 * 1 2 3 30 30 H 1.08999 * 110.99124 * 35.94756 * 5 3 2 31 31 H 1.08996 * 111.02334 * 272.14460 * 5 3 2 32 32 H 1.08998 * 109.47286 * 210.00921 * 11 10 8 33 33 H 1.09005 * 109.46643 * 330.00010 * 11 10 8 34 34 H 0.97001 * 119.99793 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47414 * 214.95273 * 20 10 8 36 36 H 1.09005 * 109.47000 * 334.95257 * 20 10 8 37 37 H 1.09005 * 115.54514 * 28.95025 * 21 20 10 38 38 H 1.09001 * 117.49740 * 359.97438 * 22 21 20 39 39 H 1.09006 * 117.50278 * 145.01524 * 22 21 20 40 40 H 1.08999 * 117.49527 * 252.51125 * 23 22 21 41 41 H 1.08993 * 117.51912 * 107.47552 * 23 22 21 42 42 H 1.09004 * 109.46758 * 299.03400 * 25 24 6 43 43 H 1.09002 * 109.46931 * 59.02696 * 25 24 6 44 44 H 1.08990 * 109.47338 * 179.02914 * 25 24 6 45 45 H 1.09000 * 109.89079 * 118.41256 * 26 24 6 46 46 H 1.08998 * 109.89220 * 239.60627 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3756 2.0110 0.5362 5 6 3.4343 1.2719 0.6145 6 6 4.0984 2.4940 -0.0675 7 1 3.8239 3.4130 0.4503 8 6 5.5966 2.3343 -0.0920 9 8 6.1359 1.8183 -1.0480 10 7 6.3373 2.7647 0.9483 11 6 5.6801 3.2841 2.1503 12 6 5.4357 2.1543 3.1172 13 1 5.7399 1.1499 2.8621 14 6 4.8238 2.4029 4.3274 15 7 4.6109 1.4170 5.1714 16 14 4.2970 4.1401 4.7683 17 1 2.9066 4.3696 4.3001 18 1 4.3589 4.3172 6.2415 19 1 5.2069 5.1143 4.1140 20 6 7.7997 2.7134 0.8775 21 6 8.3353 4.0668 0.4062 22 6 9.0850 4.1045 -0.9270 23 6 9.8532 4.2582 0.3872 24 7 3.5585 2.4977 -1.4439 25 6 3.4064 3.8698 -1.9460 26 6 2.2656 1.7890 -1.4431 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9515 0.3492 0.3513 31 1 3.3966 1.4010 1.6961 32 1 6.3192 4.0321 2.6195 33 1 4.7287 3.7398 1.8760 34 1 4.1801 1.5919 6.0227 35 1 8.2036 2.4864 1.8641 36 1 8.1023 1.9379 0.1738 37 1 7.7223 4.9305 0.6638 38 1 9.1970 3.1650 -1.4682 39 1 8.9652 4.9931 -1.5469 40 1 10.2388 5.2478 0.6320 41 1 10.4701 3.4199 0.7108 42 1 2.7080 4.4140 -1.3103 43 1 4.3746 4.3705 -1.9339 44 1 3.0240 3.8430 -2.9663 45 1 1.4707 2.4674 -1.7529 46 1 2.3108 0.9343 -2.1180 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331831834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:16 Heat of formation + Delta-G solvation = -55.430371 kcal Electronic energy + Delta-G solvation = -25660.584593 eV Core-core repulsion = 22164.976123 eV Total energy + Delta-G solvation = -3495.608470 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43382 -39.82441 -38.29790 -37.55437 -36.45427 -34.42441 -32.61321 -30.72541 -29.97536 -27.73846 -27.59699 -26.17995 -24.51189 -23.32262 -23.14064 -22.11511 -21.41466 -19.81027 -18.98417 -18.59798 -17.67211 -17.40178 -16.81432 -16.42093 -16.04282 -15.89342 -15.60898 -15.51210 -15.19353 -14.81837 -14.72738 -14.53446 -14.33143 -13.86870 -13.49012 -13.47547 -13.27796 -12.97187 -12.76326 -12.67117 -12.53497 -12.50173 -12.36231 -12.31302 -12.18674 -12.05197 -11.84699 -11.67683 -11.31275 -10.85617 -10.79442 -10.62130 -10.58946 -9.42902 -9.26949 -8.26388 -6.32830 1.38491 1.41956 1.50717 1.69941 2.10376 2.35365 2.74194 2.90735 3.05613 3.11059 3.43341 3.65780 3.82849 3.85942 3.94139 4.03471 4.09313 4.15948 4.24845 4.36995 4.40641 4.45091 4.53227 4.56332 4.65109 4.67450 4.73984 4.77177 4.80262 4.83860 4.86500 4.90998 4.97074 4.97465 5.02267 5.11109 5.26863 5.28702 5.46068 5.65431 5.84045 6.04967 6.22121 6.24086 6.63700 6.73757 7.28048 7.40924 8.89659 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.010078 B = 0.007079 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.745124 B = 3954.320474 C = 5906.103115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.075 3.925 4 H 0.089 0.911 5 C -0.105 4.105 6 C 0.069 3.931 7 H 0.088 0.912 8 C 0.526 3.474 9 O -0.572 6.572 10 N -0.595 5.595 11 C 0.217 3.783 12 C -0.532 4.532 13 H 0.029 0.971 14 C 0.023 3.977 15 N -0.940 5.940 16 Si 0.933 3.067 17 H -0.259 1.259 18 H -0.287 1.287 19 H -0.239 1.239 20 C 0.147 3.853 21 C -0.180 4.180 22 C -0.173 4.173 23 C -0.156 4.156 24 N -0.531 5.531 25 C 0.022 3.978 26 C 0.033 3.967 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.267 0.733 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 8.922 -10.589 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.016 3.984 4 H 0.107 0.893 5 C -0.144 4.144 6 C -0.042 4.042 7 H 0.106 0.894 8 C 0.314 3.686 9 O -0.451 6.451 10 N -0.325 5.325 11 C 0.095 3.905 12 C -0.570 4.570 13 H 0.047 0.953 14 C -0.176 4.176 15 N -0.579 5.579 16 Si 0.756 3.244 17 H -0.184 1.184 18 H -0.213 1.213 19 H -0.162 1.162 20 C 0.025 3.975 21 C -0.199 4.199 22 C -0.210 4.210 23 C -0.194 4.194 24 N -0.257 5.257 25 C -0.126 4.126 26 C -0.095 4.095 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.816 8.192 -11.256 14.435 hybrid contribution -0.803 0.558 1.373 1.686 sum -4.619 8.749 -9.883 13.985 Atomic orbital electron populations 1.23028 0.79165 1.04038 1.01086 1.87940 1.21900 1.27200 1.94996 1.23385 0.93671 0.85416 0.95905 0.89336 1.22538 0.94590 0.96413 1.00848 1.22292 0.91876 0.99784 0.90247 0.89418 1.20489 0.89438 0.77077 0.81611 1.90559 1.74073 1.44745 1.35739 1.47908 1.06404 1.62136 1.16084 1.19670 0.93878 0.94329 0.82595 1.21411 1.39546 0.94536 1.01519 0.95308 1.25716 0.95108 1.01180 0.95618 1.70061 1.43775 1.34205 1.09869 0.85931 0.80317 0.80268 0.77922 1.18373 1.21325 1.16183 1.20896 0.79574 0.95960 1.01119 1.22618 0.95924 0.98288 1.03058 1.22997 1.04215 1.03116 0.90706 1.23022 0.92142 1.04044 1.00163 1.63020 1.24792 1.17773 1.20070 1.22628 1.01417 0.87185 1.01340 1.23329 0.89990 0.99500 0.96679 0.92085 0.88440 0.93429 0.92961 0.89647 0.93619 0.93825 0.92374 0.90860 0.91779 0.87900 0.89890 0.87886 0.86815 0.88317 0.93630 0.92413 0.89137 0.89141 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.88 113.37 1.23 1.72 16 2 O -0.40 -12.79 10.43 -148.98 -1.55 -14.35 16 3 C 0.08 2.32 3.39 31.77 0.11 2.43 16 4 H 0.09 2.37 7.88 -2.39 -0.02 2.35 16 5 C -0.11 -4.19 6.08 31.98 0.19 -4.00 16 6 C 0.07 2.56 2.04 44.64 0.09 2.66 16 7 H 0.09 3.01 5.86 -2.39 -0.01 3.00 16 8 C 0.53 22.59 6.92 87.66 0.61 23.20 16 9 O -0.57 -27.50 16.13 -3.05 -0.05 -27.55 16 10 N -0.59 -24.77 2.46 -826.16 -2.03 -26.80 16 11 C 0.22 9.27 4.14 85.63 0.35 9.62 16 12 C -0.53 -27.87 8.53 25.60 0.22 -27.65 16 13 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 14 C 0.02 1.21 5.47 84.65 0.46 1.67 16 15 N -0.94 -55.03 13.96 21.45 0.30 -54.73 16 16 Si 0.93 38.72 27.47 68.60 1.88 40.61 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 20 C 0.15 5.55 5.78 86.38 0.50 6.05 16 21 C -0.18 -5.43 6.01 -10.80 -0.06 -5.49 16 22 C -0.17 -4.60 10.18 30.59 0.31 -4.29 16 23 C -0.16 -3.69 10.25 30.59 0.31 -3.38 16 24 N -0.53 -17.19 4.73 -891.01 -4.22 -21.41 16 25 C 0.02 0.54 9.12 127.69 1.16 1.71 16 26 C 0.03 0.90 6.67 86.65 0.58 1.48 16 27 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 0.95 8.11 -2.39 -0.02 0.93 16 30 H 0.05 2.38 8.05 -2.39 -0.02 2.36 16 31 H 0.08 3.83 6.82 -2.39 -0.02 3.81 16 32 H 0.05 1.87 7.13 -2.39 -0.02 1.85 16 33 H 0.04 1.73 5.24 -2.38 -0.01 1.72 16 34 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.07 2.81 8.11 -2.39 -0.02 2.79 16 36 H 0.06 2.57 6.95 -2.38 -0.02 2.55 16 37 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 38 H 0.08 2.41 8.03 -2.39 -0.02 2.39 16 39 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.05 0.94 8.11 -2.38 -0.02 0.92 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.09 1.83 7.58 -2.39 -0.02 1.81 16 46 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 Total: -1.00 -68.50 368.85 1.29 -67.21 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.89 Total: 31.29 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.07 Total: 5.73 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -5.95 Total: -102.93 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -1.60 Total: -41.89 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.88 Total: 40.61 kcal Total: -68.50 1.29 -67.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331831834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.778 kcal (2) G-P(sol) polarization free energy of solvation -68.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds