Wall clock time and date at job start Tue Mar 31 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47394 * 2 1 4 4 C 1.42895 * 114.00329 * 180.02562 * 3 2 1 5 5 H 1.09009 * 115.54749 * 4.32831 * 4 3 2 6 6 C 1.52998 * 117.50068 * 218.62245 * 4 3 2 7 7 C 1.53001 * 117.50283 * 149.99748 * 4 3 2 8 8 H 1.08998 * 117.49950 * 214.97689 * 7 4 3 9 9 C 1.50699 * 117.49526 * 359.97438 * 7 4 3 10 10 O 1.21285 * 120.00512 * 359.91460 * 9 7 4 11 11 N 1.34779 * 120.00009 * 179.91196 * 9 7 4 12 12 C 1.46490 * 120.00205 * 180.02562 * 11 9 7 13 13 C 1.53010 * 109.47141 * 180.02562 * 12 11 9 14 14 C 1.53037 * 109.45604 * 295.02413 * 13 12 11 15 15 C 1.53192 * 109.31055 * 178.59926 * 14 13 12 16 16 N 1.46927 * 108.76604 * 54.65872 * 15 14 13 17 17 C 1.36931 * 120.63600 * 126.35629 * 16 15 14 18 18 H 1.08003 * 120.00723 * 207.69771 * 17 16 15 19 19 C 1.38818 * 119.99596 * 27.70377 * 17 16 15 20 20 N 1.31612 * 120.00066 * 17.34857 * 19 17 16 21 21 Si 1.86801 * 119.99795 * 197.34853 * 19 17 16 22 22 H 1.48503 * 109.47015 * 90.00322 * 21 19 17 23 23 H 1.48499 * 109.47239 * 209.99843 * 21 19 17 24 24 H 1.48492 * 109.47325 * 330.00157 * 21 19 17 25 25 C 1.46929 * 118.73815 * 306.38647 * 16 15 14 26 26 C 1.53039 * 109.45602 * 174.97120 * 13 12 11 27 27 H 1.08994 * 109.46882 * 300.00459 * 1 2 3 28 28 H 1.09004 * 109.46761 * 60.00359 * 1 2 3 29 29 H 1.09001 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47165 * 239.99244 * 2 1 3 31 31 H 1.09004 * 109.46761 * 119.99641 * 2 1 3 32 32 H 1.09000 * 117.50248 * 145.01749 * 6 4 3 33 33 H 1.09005 * 117.49771 * 359.97438 * 6 4 3 34 34 H 0.97003 * 119.99624 * 0.02562 * 11 9 7 35 35 H 1.09004 * 109.47175 * 299.99568 * 12 11 9 36 36 H 1.08994 * 109.47611 * 60.00370 * 12 11 9 37 37 H 1.09001 * 109.45977 * 54.99914 * 13 12 11 38 38 H 1.09004 * 109.49906 * 298.56428 * 14 13 12 39 39 H 1.09001 * 109.49694 * 58.66561 * 14 13 12 40 40 H 1.08991 * 109.60258 * 294.87073 * 15 14 13 41 41 H 1.08999 * 109.58527 * 174.43377 * 15 14 13 42 42 H 0.96997 * 120.00284 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.58283 * 293.82166 * 25 16 15 44 44 H 1.09000 * 109.58908 * 173.39359 * 25 16 15 45 45 H 1.08995 * 109.50370 * 301.33019 * 26 13 12 46 46 H 1.08994 * 109.50264 * 61.40504 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9770 0.5195 -0.0752 6 6 4.0518 2.5727 0.8464 7 6 4.0422 2.6875 -0.6793 8 1 4.9905 2.5547 -1.1999 9 6 3.0958 3.6847 -1.2965 10 8 1.8987 3.4971 -1.2449 11 7 3.5797 4.7852 -1.9058 12 6 2.6598 5.7549 -2.5053 13 6 3.4607 6.9010 -3.1268 14 6 4.1947 7.6667 -2.0237 15 6 5.0230 8.7914 -2.6528 16 7 4.1386 9.6243 -3.4792 17 6 4.0798 10.9793 -3.2911 18 1 3.1777 11.5201 -3.5370 19 6 5.1796 11.6581 -2.7845 20 7 6.3679 11.0927 -2.8037 21 14 4.9729 13.3740 -2.0757 22 1 4.6763 13.2773 -0.6238 23 1 6.2259 14.1459 -2.2745 24 1 3.8525 14.0627 -2.7650 25 6 3.3180 8.9755 -4.5109 26 6 2.5091 7.8484 -3.8610 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5140 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 5.0065 2.3644 1.3294 33 1 3.3736 3.2189 1.4038 34 1 4.5372 4.9351 -1.9473 35 1 2.0682 5.2646 -3.2785 36 1 1.9964 6.1502 -1.7361 37 1 4.1861 6.4962 -3.8325 38 1 3.4685 8.0929 -1.3315 39 1 4.8549 6.9862 -1.4859 40 1 5.8082 8.3629 -3.2755 41 1 5.4689 9.4006 -1.8666 42 1 7.1365 11.5671 -2.4501 43 1 3.9642 8.5618 -5.2851 44 1 2.6389 9.7060 -4.9506 45 1 1.9693 7.2973 -4.6310 46 1 1.7986 8.2724 -3.1515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332097327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:38 Heat of formation + Delta-G solvation = -63.095340 kcal Electronic energy + Delta-G solvation = -24093.358171 eV Core-core repulsion = 20597.417323 eV Total energy + Delta-G solvation = -3495.940848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03921 -39.60031 -38.77243 -36.42241 -35.94259 -34.46231 -32.39655 -31.62340 -31.51683 -28.66217 -26.25173 -24.56358 -23.79973 -23.73122 -23.03578 -22.44152 -21.20009 -20.54206 -18.84683 -18.58831 -17.13642 -16.95202 -16.72191 -16.40808 -16.27858 -15.78050 -15.57693 -15.30852 -15.13816 -14.85562 -14.54402 -14.06483 -13.99340 -13.73248 -13.54081 -13.39600 -13.24393 -13.07529 -13.00339 -12.81956 -12.57867 -12.29074 -12.08614 -11.96077 -11.86380 -11.83532 -11.61332 -11.39885 -11.21850 -11.13098 -10.73231 -10.53220 -10.03049 -9.98218 -8.67466 -7.87415 -5.31677 1.45834 1.47580 1.55959 1.59855 2.23607 2.51090 2.63626 2.92382 3.26489 3.71257 3.78702 3.85498 3.86454 3.95780 3.98620 4.07404 4.20330 4.21424 4.42950 4.51176 4.51837 4.52885 4.54604 4.68771 4.73928 4.77836 4.85948 4.90916 4.92784 5.03212 5.03587 5.06008 5.17703 5.25456 5.27246 5.29111 5.41505 5.48703 5.57790 5.66881 5.79425 6.39992 6.42042 6.65898 7.16043 7.37657 7.88103 8.38688 9.18680 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029824 B = 0.002662 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.616098 B =10516.120741 C =10892.843148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.365 6.365 4 C 0.043 3.957 5 H 0.152 0.848 6 C -0.152 4.152 7 C -0.204 4.204 8 H 0.161 0.839 9 C 0.529 3.471 10 O -0.566 6.566 11 N -0.718 5.718 12 C 0.138 3.862 13 C -0.077 4.077 14 C -0.119 4.119 15 C 0.176 3.824 16 N -0.613 5.613 17 C -0.262 4.262 18 H 0.063 0.937 19 C -0.051 4.051 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.141 3.859 26 C -0.116 4.116 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.001 0.999 41 H 0.051 0.949 42 H 0.250 0.750 43 H 0.018 0.982 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -23.578 5.267 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.283 6.283 4 C -0.016 4.016 5 H 0.169 0.831 6 C -0.190 4.190 7 C -0.225 4.225 8 H 0.178 0.822 9 C 0.316 3.684 10 O -0.445 6.445 11 N -0.371 5.371 12 C 0.014 3.986 13 C -0.096 4.096 14 C -0.158 4.158 15 C 0.050 3.950 16 N -0.337 5.337 17 C -0.393 4.393 18 H 0.081 0.919 19 C -0.246 4.246 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.016 3.984 26 C -0.155 4.155 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.248 0.752 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.020 0.980 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.599 -23.462 5.321 24.494 hybrid contribution 0.650 1.376 0.165 1.531 sum -3.949 -22.086 5.486 23.097 Atomic orbital electron populations 1.21740 0.93916 1.03097 1.01943 1.22727 0.95816 0.83018 1.01107 1.88141 1.18971 1.27442 1.93772 1.22950 0.82806 0.94233 1.01617 0.83058 1.23491 1.03955 1.01515 0.90013 1.22887 1.01855 0.99632 0.98144 0.82202 1.20201 0.88661 0.81784 0.77710 1.90730 1.17678 1.76687 1.59377 1.45990 1.11160 1.22194 1.57759 1.21221 0.91977 0.88653 0.96711 1.21152 0.97416 0.93884 0.97154 1.22029 0.99021 0.97473 0.97301 1.20607 0.90418 0.90484 0.93450 1.44354 1.48791 1.03084 1.37443 1.19510 0.96309 0.84558 1.38874 0.91887 1.25753 0.94525 1.01408 1.02959 1.70168 0.98469 1.39541 1.49763 0.85306 0.76840 0.80134 0.78424 1.21347 1.22014 1.19481 1.21048 0.92954 0.94085 0.90319 1.21863 0.97465 0.96471 0.99733 0.92866 0.93698 0.88649 0.92432 0.91465 0.83668 0.90124 0.75217 0.91833 0.93440 0.90377 0.93985 0.91048 0.98050 0.93058 0.94100 0.96399 0.92958 0.89897 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.05 0.83 6.53 71.98 0.47 1.30 16 3 O -0.36 -9.01 8.48 -127.82 -1.08 -10.10 16 4 C 0.04 0.73 6.40 30.59 0.20 0.93 16 5 H 0.15 1.41 7.93 -2.38 -0.02 1.39 16 6 C -0.15 -2.42 10.18 30.59 0.31 -2.10 16 7 C -0.20 -3.70 6.19 -11.54 -0.07 -3.77 16 8 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 9 C 0.53 14.50 7.61 87.66 0.67 15.17 16 10 O -0.57 -20.71 14.92 18.12 0.27 -20.44 16 11 N -0.72 -17.87 5.27 -463.06 -2.44 -20.31 16 12 C 0.14 3.92 5.06 86.38 0.44 4.36 16 13 C -0.08 -2.36 2.19 -10.77 -0.02 -2.38 16 14 C -0.12 -4.29 5.25 30.67 0.16 -4.13 16 15 C 0.18 8.33 5.31 86.36 0.46 8.79 16 16 N -0.61 -30.87 2.99 -699.07 -2.09 -32.96 16 17 C -0.26 -14.61 9.58 84.04 0.81 -13.80 16 18 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 19 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 20 N -0.93 -55.16 11.19 21.65 0.24 -54.92 16 21 Si 0.96 45.32 29.59 68.60 2.03 47.35 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.14 5.80 6.52 86.36 0.56 6.37 16 26 C -0.12 -3.80 5.36 30.67 0.16 -3.64 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.41 8.30 7.65 -92.71 -0.71 7.59 16 35 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 2.19 7.15 -2.39 -0.02 2.17 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.05 2.79 6.04 -2.39 -0.01 2.77 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 45 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -74.04 368.30 2.46 -71.58 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.24 Total: 16.93 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.30 Total: 2.86 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -4.29 Total: -108.19 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.81 Total: -30.53 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.04 2.46 -71.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332097327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.482 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds