Wall clock time and date at job start Tue Mar 31 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47344 * 2 1 4 4 C 1.42903 * 114.00174 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.54788 * 355.72241 * 4 3 2 6 6 C 1.52999 * 117.49920 * 141.39119 * 4 3 2 7 7 C 1.52999 * 117.49853 * 210.01560 * 4 3 2 8 8 H 1.09000 * 117.50130 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.49738 * 145.01972 * 7 4 3 10 10 O 1.21280 * 120.00204 * 359.97438 * 9 7 4 11 11 N 1.34781 * 120.00174 * 179.97438 * 9 7 4 12 12 C 1.46496 * 120.00179 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47054 * 179.97438 * 12 11 9 14 14 C 1.53039 * 109.46296 * 295.02788 * 13 12 11 15 15 C 1.53188 * 109.31695 * 178.59831 * 14 13 12 16 16 N 1.46928 * 108.76121 * 54.65368 * 15 14 13 17 17 C 1.36944 * 120.62944 * 126.40490 * 16 15 14 18 18 H 1.07998 * 119.99940 * 332.61161 * 17 16 15 19 19 C 1.38806 * 119.99728 * 152.60388 * 17 16 15 20 20 N 1.31620 * 120.00078 * 159.36548 * 19 17 16 21 21 Si 1.86799 * 120.00578 * 339.36367 * 19 17 16 22 22 H 1.48503 * 109.47040 * 92.90849 * 21 19 17 23 23 H 1.48491 * 109.47564 * 212.90995 * 21 19 17 24 24 H 1.48505 * 109.46985 * 332.91508 * 21 19 17 25 25 C 1.46923 * 118.74008 * 306.38529 * 16 15 14 26 26 C 1.53042 * 109.45938 * 174.97029 * 13 12 11 27 27 H 1.08992 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46801 * 300.00332 * 1 2 3 29 29 H 1.09005 * 109.47068 * 59.99452 * 1 2 3 30 30 H 1.09000 * 109.47185 * 239.99930 * 2 1 3 31 31 H 1.09001 * 109.47320 * 120.00122 * 2 1 3 32 32 H 1.09002 * 117.49771 * 214.97589 * 6 4 3 33 33 H 1.09002 * 117.49919 * 0.02562 * 6 4 3 34 34 H 0.97001 * 119.99290 * 359.97438 * 11 9 7 35 35 H 1.08997 * 109.47416 * 299.99581 * 12 11 9 36 36 H 1.08994 * 109.47200 * 60.00482 * 12 11 9 37 37 H 1.09003 * 109.46195 * 55.00024 * 13 12 11 38 38 H 1.09004 * 109.49699 * 298.56719 * 14 13 12 39 39 H 1.09003 * 109.49650 * 58.65691 * 14 13 12 40 40 H 1.09003 * 109.59954 * 294.87176 * 15 14 13 41 41 H 1.08999 * 109.70334 * 174.50465 * 15 14 13 42 42 H 0.97000 * 120.00455 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.58811 * 293.81883 * 25 16 15 44 44 H 1.09004 * 109.58504 * 173.39944 * 25 16 15 45 45 H 1.09001 * 109.50024 * 301.33734 * 26 13 12 46 46 H 1.08999 * 109.49882 * 61.43990 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9770 0.5195 0.0724 6 6 4.0511 2.5731 -0.8475 7 6 4.0427 2.6872 0.6782 8 1 3.3586 3.4087 1.1249 9 6 5.3543 2.5032 1.3970 10 8 5.8844 1.4127 1.4220 11 7 5.9385 3.5506 2.0120 12 6 7.2139 3.3719 2.7102 13 6 7.6551 4.7059 3.3159 14 6 7.9439 5.7050 2.1932 15 6 8.3514 7.0495 2.8037 16 7 9.4784 6.8300 3.7206 17 6 10.6360 7.5495 3.5879 18 1 10.9246 7.9348 2.6212 19 6 11.4384 7.7836 4.6961 20 7 12.7062 8.0989 4.5359 21 14 10.7191 7.6513 6.4150 22 1 10.9336 6.2777 6.9370 23 1 11.3883 8.6305 7.3085 24 1 9.2632 7.9404 6.3659 25 6 9.3396 5.8243 4.7826 26 6 8.9207 4.4935 4.1498 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.0054 2.3651 -1.3314 33 1 3.3725 3.2197 -1.4040 34 1 5.5147 4.4229 1.9916 35 1 7.0935 2.6344 3.5037 36 1 7.9692 3.0264 2.0045 37 1 6.8613 5.0955 3.9534 38 1 8.7546 5.3275 1.5699 39 1 7.0488 5.8380 1.5854 40 1 7.5100 7.4715 3.3535 41 1 8.6523 7.7363 2.0126 42 1 13.2669 8.2629 5.3103 43 1 8.5788 6.1463 5.4937 44 1 10.2933 5.7007 5.2957 45 1 8.7210 3.7643 4.9349 46 1 9.7221 4.1277 3.5080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332097329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:42 Heat of formation + Delta-G solvation = -41.931472 kcal Electronic energy + Delta-G solvation = -23777.444904 eV Core-core repulsion = 20282.421790 eV Total energy + Delta-G solvation = -3495.023114 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.25776 -38.69204 -37.98556 -35.53882 -35.00363 -32.88165 -31.25909 -31.04712 -30.36551 -27.42393 -24.70681 -23.44117 -23.28673 -22.63090 -22.35059 -21.25046 -20.28075 -19.35719 -18.01461 -16.86145 -16.67834 -16.10077 -15.93058 -15.42323 -15.29719 -14.84200 -14.32727 -14.16953 -13.96424 -13.54717 -13.27177 -13.15885 -13.05053 -12.84398 -12.74434 -12.49609 -12.36447 -12.04096 -11.80801 -11.60474 -11.42936 -11.33644 -10.88734 -10.84675 -10.65233 -10.51641 -10.15599 -10.08387 -9.88150 -9.70925 -9.52148 -9.41916 -9.10272 -8.62550 -6.98278 -5.95315 -3.31031 2.32151 2.75690 3.31234 3.33241 3.47699 3.50319 3.57808 4.40188 4.48181 4.52374 4.63196 4.67834 4.76536 4.88258 4.92354 4.96470 4.98333 5.09224 5.11806 5.21136 5.34984 5.42073 5.44019 5.48873 5.61929 5.67772 5.70549 5.75968 5.86700 5.91684 6.04736 6.16360 6.25586 6.37390 6.40507 6.48181 6.61984 6.63952 6.69223 6.81423 6.95389 7.40647 7.96132 8.10240 8.32508 8.93972 9.71855 10.09746 11.20708 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.041927 B = 0.002423 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.667117 B =11553.532017 C =11712.447430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.052 3.948 5 H 0.125 0.875 6 C -0.154 4.154 7 C -0.194 4.194 8 H 0.129 0.871 9 C 0.542 3.458 10 O -0.547 6.547 11 N -0.718 5.718 12 C 0.123 3.877 13 C -0.091 4.091 14 C -0.129 4.129 15 C 0.148 3.852 16 N -0.606 5.606 17 C -0.259 4.259 18 H 0.085 0.915 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.126 3.874 26 C -0.126 4.126 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.063 0.937 42 H 0.262 0.738 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.174 -13.492 -8.599 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.276 6.276 4 C -0.007 4.007 5 H 0.142 0.858 6 C -0.192 4.192 7 C -0.216 4.216 8 H 0.147 0.853 9 C 0.328 3.672 10 O -0.425 6.425 11 N -0.369 5.369 12 C 0.000 4.000 13 C -0.110 4.110 14 C -0.168 4.168 15 C 0.022 3.978 16 N -0.330 5.330 17 C -0.388 4.388 18 H 0.102 0.898 19 C -0.177 4.177 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.001 3.999 26 C -0.166 4.166 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.042 0.958 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.735 -14.038 -8.499 27.234 hybrid contribution -0.328 0.297 1.156 1.238 sum -22.064 -13.741 -7.343 27.010 Atomic orbital electron populations 1.21760 0.93471 1.02469 1.03210 1.22580 0.95563 0.83156 1.00642 1.87809 1.18559 1.27214 1.93979 1.22598 0.81961 0.94360 1.01734 0.85778 1.23446 1.03097 1.01934 0.90702 1.22687 0.97507 1.04579 0.96787 0.85298 1.19549 0.85075 0.84191 0.78374 1.90693 1.65225 1.25514 1.61036 1.45991 1.24085 1.12163 1.54681 1.21565 0.84181 0.98138 0.96108 1.21309 0.98512 0.93679 0.97529 1.22076 1.00293 0.97531 0.96910 1.20914 0.89930 0.93768 0.93171 1.44357 1.13510 1.40989 1.34135 1.18920 0.95869 1.28884 0.95094 0.89755 1.25287 0.95713 0.98941 0.97740 1.69839 1.04404 1.50764 1.30142 0.86938 0.79500 0.76313 0.85830 1.21633 1.23187 1.19651 1.21326 0.99634 0.87824 0.91142 1.21997 0.96449 0.99184 0.98964 0.90858 0.91761 0.91780 0.92897 0.92870 0.87375 0.87055 0.76280 0.91673 0.91338 0.91149 0.91670 0.92953 0.96130 0.91882 0.92782 0.95794 0.90856 0.92573 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.41 6.53 37.16 0.24 0.66 16 3 O -0.36 -3.47 10.60 -35.23 -0.37 -3.84 16 4 C 0.05 0.50 5.96 -26.73 -0.16 0.34 16 5 H 0.12 1.24 7.45 -51.93 -0.39 0.85 16 6 C -0.15 -1.29 10.18 -26.73 -0.27 -1.56 16 7 C -0.19 -1.87 6.14 -91.77 -0.56 -2.43 16 8 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 9 C 0.54 6.71 7.61 -10.99 -0.08 6.63 16 10 O -0.55 -8.72 16.26 5.56 0.09 -8.63 16 11 N -0.72 -8.11 5.27 -60.30 -0.32 -8.43 16 12 C 0.12 1.61 5.06 -4.04 -0.02 1.59 16 13 C -0.09 -1.30 2.19 -90.58 -0.20 -1.50 16 14 C -0.13 -1.94 5.25 -26.61 -0.14 -2.07 16 15 C 0.15 2.78 6.52 -3.71 -0.02 2.75 16 16 N -0.61 -14.10 2.77 -172.32 -0.48 -14.58 16 17 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 20 N -0.91 -27.83 13.97 55.49 0.78 -27.06 16 21 Si 0.88 22.32 24.34 -169.99 -4.14 18.18 16 22 H -0.29 -7.03 6.62 56.52 0.37 -6.66 16 23 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.27 -6.72 6.64 56.52 0.38 -6.35 16 25 C 0.13 2.69 4.20 -3.71 -0.02 2.68 16 26 C -0.13 -2.14 5.36 -26.61 -0.14 -2.28 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 3.67 7.65 -40.82 -0.31 3.35 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.64 7.15 -51.93 -0.37 0.26 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.02 0.51 7.08 -51.93 -0.37 0.14 16 44 H 0.07 1.73 4.50 -51.93 -0.23 1.50 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -32.79 364.36 -8.22 -41.02 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.04 Total: 0.33 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.24 Total: -2.48 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.02 Total: -50.06 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.28 Total: -12.47 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.79 -8.22 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332097329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.914 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds