Wall clock time and date at job start Tue Mar 31 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47344 * 2 1 4 4 C 1.42903 * 114.00174 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.54788 * 355.72241 * 4 3 2 6 6 C 1.52999 * 117.49920 * 141.39119 * 4 3 2 7 7 C 1.52999 * 117.49853 * 210.01560 * 4 3 2 8 8 H 1.09000 * 117.50130 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.49738 * 145.01972 * 7 4 3 10 10 O 1.21280 * 120.00204 * 359.97438 * 9 7 4 11 11 N 1.34781 * 120.00174 * 179.97438 * 9 7 4 12 12 C 1.46496 * 120.00179 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47054 * 179.97438 * 12 11 9 14 14 C 1.53039 * 109.46296 * 295.02788 * 13 12 11 15 15 C 1.53188 * 109.31695 * 178.59831 * 14 13 12 16 16 N 1.46928 * 108.76121 * 54.65368 * 15 14 13 17 17 C 1.36944 * 120.62944 * 126.40490 * 16 15 14 18 18 H 1.07998 * 119.99940 * 332.61161 * 17 16 15 19 19 C 1.38806 * 119.99728 * 152.60388 * 17 16 15 20 20 N 1.31620 * 120.00078 * 159.36548 * 19 17 16 21 21 Si 1.86799 * 120.00578 * 339.36367 * 19 17 16 22 22 H 1.48503 * 109.47040 * 92.90849 * 21 19 17 23 23 H 1.48491 * 109.47564 * 212.90995 * 21 19 17 24 24 H 1.48505 * 109.46985 * 332.91508 * 21 19 17 25 25 C 1.46923 * 118.74008 * 306.38529 * 16 15 14 26 26 C 1.53042 * 109.45938 * 174.97029 * 13 12 11 27 27 H 1.08992 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46801 * 300.00332 * 1 2 3 29 29 H 1.09005 * 109.47068 * 59.99452 * 1 2 3 30 30 H 1.09000 * 109.47185 * 239.99930 * 2 1 3 31 31 H 1.09001 * 109.47320 * 120.00122 * 2 1 3 32 32 H 1.09002 * 117.49771 * 214.97589 * 6 4 3 33 33 H 1.09002 * 117.49919 * 0.02562 * 6 4 3 34 34 H 0.97001 * 119.99290 * 359.97438 * 11 9 7 35 35 H 1.08997 * 109.47416 * 299.99581 * 12 11 9 36 36 H 1.08994 * 109.47200 * 60.00482 * 12 11 9 37 37 H 1.09003 * 109.46195 * 55.00024 * 13 12 11 38 38 H 1.09004 * 109.49699 * 298.56719 * 14 13 12 39 39 H 1.09003 * 109.49650 * 58.65691 * 14 13 12 40 40 H 1.09003 * 109.59954 * 294.87176 * 15 14 13 41 41 H 1.08999 * 109.70334 * 174.50465 * 15 14 13 42 42 H 0.97000 * 120.00455 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.58811 * 293.81883 * 25 16 15 44 44 H 1.09004 * 109.58504 * 173.39944 * 25 16 15 45 45 H 1.09001 * 109.50024 * 301.33734 * 26 13 12 46 46 H 1.08999 * 109.49882 * 61.43990 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9770 0.5195 0.0724 6 6 4.0511 2.5731 -0.8475 7 6 4.0427 2.6872 0.6782 8 1 3.3586 3.4087 1.1249 9 6 5.3543 2.5032 1.3970 10 8 5.8844 1.4127 1.4220 11 7 5.9385 3.5506 2.0120 12 6 7.2139 3.3719 2.7102 13 6 7.6551 4.7059 3.3159 14 6 7.9439 5.7050 2.1932 15 6 8.3514 7.0495 2.8037 16 7 9.4784 6.8300 3.7206 17 6 10.6360 7.5495 3.5879 18 1 10.9246 7.9348 2.6212 19 6 11.4384 7.7836 4.6961 20 7 12.7062 8.0989 4.5359 21 14 10.7191 7.6513 6.4150 22 1 10.9336 6.2777 6.9370 23 1 11.3883 8.6305 7.3085 24 1 9.2632 7.9404 6.3659 25 6 9.3396 5.8243 4.7826 26 6 8.9207 4.4935 4.1498 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.0054 2.3651 -1.3314 33 1 3.3725 3.2197 -1.4040 34 1 5.5147 4.4229 1.9916 35 1 7.0935 2.6344 3.5037 36 1 7.9692 3.0264 2.0045 37 1 6.8613 5.0955 3.9534 38 1 8.7546 5.3275 1.5699 39 1 7.0488 5.8380 1.5854 40 1 7.5100 7.4715 3.3535 41 1 8.6523 7.7363 2.0126 42 1 13.2669 8.2629 5.3103 43 1 8.5788 6.1463 5.4937 44 1 10.2933 5.7007 5.2957 45 1 8.7210 3.7643 4.9349 46 1 9.7221 4.1277 3.5080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332097329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:41 Heat of formation + Delta-G solvation = -64.583362 kcal Electronic energy + Delta-G solvation = -23778.427164 eV Core-core repulsion = 20282.421790 eV Total energy + Delta-G solvation = -3496.005373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18588 -39.78324 -39.05617 -36.60845 -35.99584 -34.51878 -32.87735 -31.87695 -31.70502 -28.82431 -26.12841 -24.81555 -23.95704 -23.80270 -23.10412 -22.68294 -21.30657 -20.70452 -18.90489 -18.62748 -17.62202 -17.13161 -16.99749 -16.50153 -16.42452 -15.91205 -15.72131 -15.36170 -15.21866 -15.12153 -14.71499 -14.44621 -13.99804 -13.75808 -13.71260 -13.53845 -13.41556 -13.34757 -13.05056 -12.93873 -12.54574 -12.24801 -12.17627 -12.11996 -11.90907 -11.74775 -11.61262 -11.58871 -11.31313 -11.20448 -10.98893 -10.66771 -10.20948 -10.10277 -8.91443 -8.16063 -5.47185 1.30395 1.41327 1.42001 1.50649 1.95071 2.42214 2.60335 2.83311 3.06588 3.37989 3.66206 3.75734 3.80078 3.86800 3.94854 4.02128 4.06262 4.17739 4.33032 4.38663 4.43836 4.46028 4.51087 4.55015 4.63438 4.71906 4.76711 4.80557 4.88447 4.91227 5.00329 5.01620 5.02401 5.10461 5.16727 5.21511 5.27414 5.28085 5.39256 5.59994 5.88151 6.13389 6.17981 6.52476 6.94044 7.19625 7.64730 8.04620 9.03967 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.041927 B = 0.002423 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.667117 B =11553.532017 C =11712.447430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.369 6.369 4 C 0.043 3.957 5 H 0.115 0.885 6 C -0.139 4.139 7 C -0.194 4.194 8 H 0.148 0.852 9 C 0.541 3.459 10 O -0.587 6.587 11 N -0.708 5.708 12 C 0.134 3.866 13 C -0.079 4.079 14 C -0.118 4.118 15 C 0.141 3.859 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.049 0.951 19 C -0.040 4.040 20 N -0.959 5.959 21 Si 0.950 3.050 22 H -0.275 1.275 23 H -0.313 1.313 24 H -0.258 1.258 25 C 0.120 3.880 26 C -0.121 4.121 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.416 0.584 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.041 0.959 41 H 0.052 0.948 42 H 0.261 0.739 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.492 -14.332 -8.430 30.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.288 6.288 4 C -0.015 4.015 5 H 0.132 0.868 6 C -0.177 4.177 7 C -0.215 4.215 8 H 0.165 0.835 9 C 0.329 3.671 10 O -0.468 6.468 11 N -0.359 5.359 12 C 0.010 3.990 13 C -0.098 4.098 14 C -0.157 4.157 15 C 0.016 3.984 16 N -0.347 5.347 17 C -0.377 4.377 18 H 0.067 0.933 19 C -0.234 4.234 20 N -0.606 5.606 21 Si 0.779 3.221 22 H -0.202 1.202 23 H -0.242 1.242 24 H -0.182 1.182 25 C -0.005 4.005 26 C -0.161 4.161 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.254 0.746 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.121 -14.879 -8.343 30.365 hybrid contribution 0.684 0.534 0.993 1.318 sum -24.437 -14.345 -7.350 29.274 Atomic orbital electron populations 1.21772 0.92269 1.03599 1.02944 1.22778 0.96567 0.82336 1.01041 1.87788 1.18387 1.28556 1.94094 1.22589 0.82106 0.94245 1.02603 0.86785 1.23506 1.03156 1.01139 0.89903 1.22674 0.96262 1.05152 0.97418 0.83468 1.19991 0.85656 0.83579 0.77921 1.90680 1.66468 1.27137 1.62529 1.45859 1.23331 1.12750 1.53995 1.21291 0.84648 0.97180 0.95850 1.21179 0.97611 0.94012 0.97023 1.21952 1.01228 0.95352 0.97143 1.21140 0.88887 0.95916 0.92409 1.44515 1.13454 1.41279 1.35440 1.18869 0.97223 1.27963 0.93616 0.93310 1.25948 0.95869 0.99876 1.01743 1.69979 1.05899 1.53657 1.31039 0.85861 0.79011 0.76527 0.80721 1.20222 1.24211 1.18241 1.21392 0.98692 0.89416 0.91005 1.21891 0.97334 0.97135 0.99698 0.89077 0.92237 0.91773 0.92040 0.92993 0.87440 0.85361 0.74631 0.91648 0.92752 0.89210 0.93534 0.89151 0.94149 0.92962 0.93057 0.94507 0.93615 0.90018 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 71.98 0.74 -0.69 16 2 C 0.05 0.64 6.53 71.98 0.47 1.11 16 3 O -0.37 -6.53 10.60 -148.98 -1.58 -8.11 16 4 C 0.04 0.76 5.96 30.59 0.18 0.95 16 5 H 0.11 2.21 7.45 -2.39 -0.02 2.19 16 6 C -0.14 -1.99 10.18 30.60 0.31 -1.67 16 7 C -0.19 -3.22 6.14 -11.54 -0.07 -3.29 16 8 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 9 C 0.54 12.18 7.61 87.66 0.67 12.85 16 10 O -0.59 -18.07 16.26 -3.03 -0.05 -18.12 16 11 N -0.71 -13.67 5.27 -463.07 -2.44 -16.11 16 12 C 0.13 3.13 5.06 86.38 0.44 3.56 16 13 C -0.08 -1.99 2.19 -10.76 -0.02 -2.01 16 14 C -0.12 -3.21 5.25 30.67 0.16 -3.05 16 15 C 0.14 5.01 6.52 86.36 0.56 5.57 16 16 N -0.62 -28.45 2.77 -699.09 -1.94 -30.39 16 17 C -0.25 -14.00 10.04 84.03 0.84 -13.16 16 18 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 19 C -0.04 -2.35 5.23 84.86 0.44 -1.91 16 20 N -0.96 -60.87 13.97 21.65 0.30 -60.56 16 21 Si 0.95 46.53 24.34 68.60 1.67 48.20 16 22 H -0.28 -12.76 6.62 99.48 0.66 -12.10 16 23 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 24 H -0.26 -11.92 6.64 99.48 0.66 -11.26 16 25 C 0.12 4.87 4.20 86.36 0.36 5.24 16 26 C -0.12 -3.82 5.36 30.67 0.16 -3.66 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.42 5.75 7.65 -92.71 -0.71 5.04 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.80 7.15 -2.39 -0.02 1.79 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 42 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.04 1.42 7.08 -2.38 -0.02 1.40 16 44 H 0.05 2.11 4.50 -2.39 -0.01 2.10 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -73.03 364.36 1.37 -71.67 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.15 Total: 13.59 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.25 Total: -0.16 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.07 Total: -107.06 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.63 Total: -26.23 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.67 Total: 48.20 kcal Total: -73.03 1.37 -71.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332097329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.082 kcal (2) G-P(sol) polarization free energy of solvation -73.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds