Wall clock time and date at job start Tue Mar 31 2020 03:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99867 * 2 1 4 4 C 1.53004 * 109.46820 * 179.97438 * 3 2 1 5 5 C 1.50698 * 115.55347 * 294.44185 * 4 3 2 6 6 O 1.21287 * 119.99849 * 98.39773 * 5 4 3 7 7 N 1.34772 * 120.00068 * 278.40176 * 5 4 3 8 8 C 1.46509 * 120.00138 * 176.67598 * 7 5 4 9 9 C 1.52998 * 109.47190 * 179.97438 * 8 7 5 10 10 C 1.53038 * 109.45828 * 295.06841 * 9 8 7 11 11 C 1.53194 * 109.30963 * 178.61721 * 10 9 8 12 12 N 1.46925 * 108.77705 * 54.63017 * 11 10 9 13 13 C 1.36936 * 120.62960 * 126.41501 * 12 11 10 14 14 H 1.08002 * 120.00402 * 331.91461 * 13 12 11 15 15 C 1.38815 * 120.00272 * 151.91258 * 13 12 11 16 16 N 1.31621 * 119.99931 * 344.38142 * 15 13 12 17 17 Si 1.86800 * 120.00269 * 164.38146 * 15 13 12 18 18 H 1.48500 * 109.46777 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47204 * 120.00254 * 17 15 13 20 20 H 1.48505 * 109.46928 * 240.00559 * 17 15 13 21 21 C 1.46927 * 118.74112 * 306.39458 * 12 11 10 22 22 C 1.53032 * 109.45829 * 174.99902 * 9 8 7 23 23 C 1.53004 * 117.51531 * 80.14831 * 4 3 2 24 24 C 1.52999 * 117.49578 * 148.77447 * 4 3 2 25 25 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47287 * 300.00408 * 1 2 3 27 27 H 1.09000 * 109.46714 * 59.99861 * 1 2 3 28 28 H 1.09007 * 109.47058 * 60.00026 * 3 2 1 29 29 H 1.08990 * 109.47449 * 299.99833 * 3 2 1 30 30 H 0.97001 * 120.00587 * 356.66628 * 7 5 4 31 31 H 1.09000 * 109.46280 * 299.99651 * 8 7 5 32 32 H 1.09002 * 109.47035 * 59.99472 * 8 7 5 33 33 H 1.09007 * 109.45906 * 55.02462 * 9 8 7 34 34 H 1.09005 * 109.49702 * 298.56181 * 10 9 8 35 35 H 1.08996 * 109.50080 * 58.66642 * 10 9 8 36 36 H 1.09002 * 109.58352 * 294.84569 * 11 10 9 37 37 H 1.08998 * 109.70672 * 174.49402 * 11 10 9 38 38 H 0.96994 * 120.00089 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.58316 * 293.81713 * 21 12 11 40 40 H 1.08994 * 109.70466 * 173.46642 * 21 12 11 41 41 H 1.09003 * 109.49769 * 301.33413 * 22 9 8 42 42 H 1.08995 * 109.50278 * 61.43350 * 22 9 8 43 43 H 1.08996 * 117.49387 * 214.97025 * 23 4 3 44 44 H 1.09001 * 117.49664 * 359.97438 * 23 4 3 45 45 H 1.09006 * 117.49936 * 359.97377 * 24 4 3 46 46 H 1.08997 * 117.50348 * 144.97473 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1386 0.5727 1.2387 6 8 4.4468 -0.6003 1.2469 7 7 4.3353 1.3289 2.3369 8 6 4.8535 0.7182 3.5636 9 6 4.9830 1.7874 4.6503 10 6 6.0367 2.8151 4.2313 11 6 6.1390 3.9025 5.3054 12 7 6.4014 3.2634 6.6021 13 6 7.4658 3.6542 7.3699 14 1 8.3477 4.0652 6.9012 15 6 7.4112 3.5222 8.7507 16 7 6.2556 3.3194 9.3472 17 14 8.9778 3.6325 9.7622 18 1 10.1344 3.8625 8.8597 19 1 8.8679 4.7586 10.7238 20 1 9.1765 2.3631 10.5069 21 6 5.4999 2.1972 7.0595 22 6 5.4049 1.1289 5.9657 23 6 4.2223 0.8971 -1.3360 24 6 4.3316 2.2856 -0.7028 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 4.1339 2.2775 2.3151 31 1 4.1684 -0.0604 3.8992 32 1 5.8322 0.2807 3.3663 33 1 4.0231 2.2861 4.7852 34 1 7.0023 2.3215 4.1203 35 1 5.7473 3.2669 3.2826 36 1 5.2018 4.4570 5.3544 37 1 6.9542 4.5839 5.0622 38 1 6.2175 3.2268 10.3120 39 1 4.5105 2.6126 7.2516 40 1 5.8923 1.7509 7.9732 41 1 4.6656 0.3805 6.2514 42 1 6.3763 0.6512 5.8384 43 1 5.1103 0.2653 -1.3197 44 1 3.5875 0.7936 -2.2160 45 1 3.7687 3.0959 -1.1664 46 1 5.2914 2.5677 -0.2699 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332161127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:31 Heat of formation + Delta-G solvation = -44.992062 kcal Electronic energy + Delta-G solvation = -24422.485843 eV Core-core repulsion = 20927.330012 eV Total energy + Delta-G solvation = -3495.155831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.26879 -38.33274 -37.66385 -36.41083 -34.89318 -32.79084 -30.78796 -29.72533 -28.65455 -27.07624 -25.91472 -24.34932 -22.99463 -22.66353 -22.08183 -20.95545 -19.75096 -18.98698 -17.46089 -16.72638 -16.51593 -16.13328 -15.81749 -15.59501 -14.89246 -14.80382 -14.52459 -14.01907 -13.68301 -13.51071 -13.42135 -13.10716 -12.78683 -12.47840 -12.36395 -12.30024 -11.92049 -11.82363 -11.70537 -11.33495 -10.98529 -10.94057 -10.73800 -10.59689 -10.49368 -10.22888 -10.18593 -10.00173 -9.93572 -9.72173 -9.53355 -9.40270 -8.93536 -8.47379 -6.66619 -5.78488 -3.21731 2.63776 2.96762 3.22093 3.37070 3.45010 3.47085 3.73178 4.33649 4.49506 4.51132 4.60567 4.74274 4.92763 5.03968 5.09782 5.13476 5.23603 5.26039 5.28870 5.38711 5.39709 5.41749 5.49836 5.60299 5.61463 5.80111 5.88204 5.96479 6.05971 6.16360 6.32696 6.44634 6.50599 6.60856 6.70480 6.77233 6.81875 6.83937 6.97951 7.38392 7.58000 7.68141 7.79698 8.29159 8.45802 9.21999 9.85274 10.41722 11.29786 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.002870 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.170687 B = 9753.540345 C =10070.538790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.107 3.893 4 C -0.161 4.161 5 C 0.551 3.449 6 O -0.531 6.531 7 N -0.722 5.722 8 C 0.124 3.876 9 C -0.089 4.089 10 C -0.127 4.127 11 C 0.146 3.854 12 N -0.593 5.593 13 C -0.250 4.250 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.172 3.828 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.156 4.156 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.400 0.600 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.052 0.948 38 H 0.253 0.747 39 H 0.017 0.983 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 -1.829 -19.939 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.030 3.970 4 C -0.164 4.164 5 C 0.336 3.664 6 O -0.407 6.407 7 N -0.373 5.373 8 C 0.000 4.000 9 C -0.108 4.108 10 C -0.166 4.166 11 C 0.019 3.981 12 N -0.316 5.316 13 C -0.380 4.380 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.549 5.549 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.046 3.954 22 C -0.173 4.173 23 C -0.173 4.173 24 C -0.193 4.193 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.234 0.766 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.357 -2.865 -19.719 22.014 hybrid contribution 0.320 0.738 0.651 1.035 sum -9.038 -2.128 -19.067 21.208 Atomic orbital electron populations 1.22765 0.80932 1.03004 0.99887 1.88019 1.19525 1.26993 1.95332 1.21838 0.88999 0.85355 1.00818 1.21338 0.94061 1.06666 0.94326 1.19283 0.77814 0.86178 0.83166 1.90695 1.50421 1.16310 1.83246 1.46062 1.66577 1.12574 1.12079 1.21590 0.99076 0.96142 0.83149 1.21304 0.99429 0.95452 0.94644 1.22070 0.98514 0.97915 0.98086 1.20885 0.98004 0.92741 0.86471 1.44062 1.31348 1.38438 1.17732 1.19237 0.92821 1.38120 0.87817 0.91708 1.25056 0.96509 1.01372 0.96829 1.70020 1.22597 1.53604 1.08678 0.86221 0.83070 0.77297 0.80182 1.20284 1.21743 1.21561 1.20779 0.92902 0.86940 0.94810 1.22183 1.00214 0.99405 0.95497 1.22939 1.02469 0.97980 0.93936 1.23158 1.01368 0.92453 1.02299 0.89453 0.93959 0.94120 0.92411 0.92241 0.76579 0.91884 0.91634 0.91383 0.92185 0.93503 0.96659 0.92913 0.93699 0.96532 0.89206 0.93081 0.92398 0.87850 0.87766 0.87616 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.49 10.64 -35.23 -0.37 -4.86 16 3 C 0.11 1.00 5.76 37.16 0.21 1.21 16 4 C -0.16 -1.69 2.13 -155.66 -0.33 -2.02 16 5 C 0.55 7.80 6.92 -10.99 -0.08 7.73 16 6 O -0.53 -9.83 17.02 5.55 0.09 -9.74 16 7 N -0.72 -9.21 5.27 -60.29 -0.32 -9.53 16 8 C 0.12 1.82 5.07 -4.04 -0.02 1.80 16 9 C -0.09 -1.42 2.19 -90.58 -0.20 -1.61 16 10 C -0.13 -2.06 5.25 -26.61 -0.14 -2.20 16 11 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 12 N -0.59 -14.64 3.00 -172.32 -0.52 -15.16 16 13 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 14 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.02 4.96 -17.43 -0.09 -0.07 16 16 N -0.90 -26.12 11.10 55.49 0.62 -25.50 16 17 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.17 4.03 5.29 -3.71 -0.02 4.01 16 22 C -0.13 -2.49 5.36 -26.62 -0.14 -2.63 16 23 C -0.14 -1.25 9.89 -26.73 -0.26 -1.52 16 24 C -0.16 -1.17 9.92 -26.73 -0.27 -1.44 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.40 4.20 7.65 -40.82 -0.31 3.89 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 2.39 6.01 -51.93 -0.31 2.07 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -32.98 371.07 -8.46 -41.44 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.14 Total: 0.56 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.39 Total: 0.55 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.22 Total: -50.19 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.28 Total: -14.60 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.98 -8.46 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332161127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.551 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds