Wall clock time and date at job start Tue Mar 31 2020 03:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99555 * 2 1 4 4 H 1.08998 * 109.47168 * 329.99275 * 3 2 1 5 5 C 1.53002 * 109.47043 * 89.99968 * 3 2 1 6 6 C 1.52995 * 109.46928 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47288 * 299.99919 * 6 5 3 8 8 C 1.52995 * 109.47147 * 59.99866 * 7 6 5 9 9 C 1.53003 * 109.47353 * 300.00074 * 8 7 6 10 10 H 1.08998 * 109.47000 * 300.00431 * 9 8 7 11 11 C 1.50697 * 109.47104 * 179.97438 * 9 8 7 12 12 O 1.21289 * 119.99942 * 256.74830 * 11 9 8 13 13 N 1.34777 * 120.00034 * 76.74957 * 11 9 8 14 14 C 1.46965 * 120.59481 * 173.93046 * 13 11 9 15 15 C 1.53377 * 108.63219 * 235.20235 * 14 13 11 16 16 N 1.46961 * 108.63676 * 310.57800 * 15 14 13 17 17 C 1.36939 * 120.59556 * 235.23009 * 16 15 14 18 18 H 1.07994 * 120.00546 * 151.82491 * 17 16 15 19 19 C 1.38820 * 119.99285 * 331.82978 * 17 16 15 20 20 N 1.31618 * 119.99425 * 160.36871 * 19 17 16 21 21 Si 1.86802 * 120.00175 * 340.35915 * 19 17 16 22 22 H 1.48501 * 109.46707 * 89.94112 * 21 19 17 23 23 H 1.48495 * 109.47088 * 209.94086 * 21 19 17 24 24 H 1.48502 * 109.46985 * 329.94390 * 21 19 17 25 25 C 1.46968 * 118.81176 * 55.22118 * 16 15 14 26 26 C 1.46969 * 120.59281 * 353.90591 * 13 11 9 27 27 H 1.09000 * 109.47703 * 300.00374 * 1 2 3 28 28 H 1.09004 * 109.46827 * 60.00509 * 1 2 3 29 29 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47214 * 59.99509 * 5 3 2 31 31 H 1.09004 * 109.46564 * 299.99728 * 5 3 2 32 32 H 1.09002 * 109.47209 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47332 * 59.99877 * 6 5 3 34 34 H 1.09001 * 109.46899 * 300.00223 * 7 6 5 35 35 H 1.09001 * 109.47390 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47499 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.46929 * 60.00375 * 8 7 6 38 38 H 1.08998 * 109.60816 * 354.94491 * 14 13 11 39 39 H 1.08994 * 109.61253 * 115.46022 * 14 13 11 40 40 H 1.09002 * 109.60467 * 70.32170 * 15 14 13 41 41 H 1.08999 * 109.61008 * 190.83050 * 15 14 13 42 42 H 0.97007 * 119.99448 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.60836 * 185.02950 * 25 16 15 44 44 H 1.08997 * 109.74692 * 64.61155 * 25 16 15 45 45 H 1.09001 * 109.60690 * 244.54354 * 26 13 11 46 46 H 1.08999 * 109.60946 * 5.05032 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 2.8403 3.1689 1.4425 7 6 4.1891 3.1263 0.7214 8 6 3.9817 2.6603 -0.7210 9 6 3.3590 1.2627 -0.7210 10 1 4.0239 0.5687 -0.2070 11 6 3.1542 0.8041 -2.1418 12 8 2.0455 0.8283 -2.6331 13 7 4.2030 0.3670 -2.8666 14 6 4.0005 -0.2068 -4.2044 15 6 4.6322 -1.6040 -4.2391 16 7 5.9988 -1.5150 -3.7060 17 6 7.0646 -1.9586 -4.4426 18 1 8.0397 -1.5162 -4.3022 19 6 6.8914 -2.9771 -5.3699 20 7 7.7726 -3.1472 -6.3326 21 14 5.4079 -4.1061 -5.2512 22 1 4.2863 -3.5340 -6.0386 23 1 5.7597 -5.4441 -5.7907 24 1 4.9984 -4.2375 -3.8298 25 6 6.2012 -0.9411 -2.3682 26 6 5.5697 0.4560 -2.3336 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 2.8828 1.0776 1.9564 31 1 1.2566 1.8015 1.9563 32 1 2.9885 3.5007 2.4702 33 1 2.1754 3.8631 0.9285 34 1 4.8540 2.4321 1.2354 35 1 4.6330 4.1218 0.7218 36 1 4.9426 2.6294 -1.2346 37 1 3.3168 3.3544 -1.2350 38 1 2.9333 -0.2825 -4.4123 39 1 4.4770 0.4286 -4.9509 40 1 4.0440 -2.2866 -3.6258 41 1 4.6632 -1.9661 -5.2668 42 1 7.6518 -3.8591 -6.9804 43 1 7.2685 -0.8654 -2.1603 44 1 5.7269 -1.5758 -1.6196 45 1 6.1578 1.1387 -2.9469 46 1 5.5386 0.8180 -1.3059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340572434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:47 Heat of formation + Delta-G solvation = -58.893062 kcal Electronic energy + Delta-G solvation = -25918.245273 eV Core-core repulsion = 22422.486649 eV Total energy + Delta-G solvation = -3495.758623 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.50071 -38.54548 -36.87254 -36.46124 -33.98125 -31.81489 -31.36517 -30.35392 -30.13407 -27.21436 -26.44031 -24.11642 -23.64254 -22.76044 -22.27490 -20.86367 -20.03823 -18.75021 -17.21095 -16.75244 -16.35368 -15.93625 -15.32576 -15.23163 -14.89585 -14.77143 -14.27861 -14.12764 -13.91055 -13.85483 -13.61966 -13.26679 -12.95445 -12.78935 -12.48420 -12.17697 -12.12208 -11.90251 -11.79813 -11.47654 -11.27775 -11.06160 -10.98890 -10.90862 -10.72703 -10.49758 -10.41447 -10.26243 -9.97170 -9.59680 -9.53727 -9.25668 -8.82469 -8.25794 -6.97822 -5.99454 -3.37474 2.93319 3.28947 3.31918 3.48009 3.51413 3.69247 4.40673 4.45692 4.49417 4.71675 4.85174 4.89906 4.97462 5.04548 5.10836 5.19008 5.20597 5.28316 5.29638 5.43160 5.51356 5.56507 5.56989 5.64891 5.71071 5.75495 5.77508 5.83318 5.85389 5.87189 5.90144 6.00017 6.05318 6.15463 6.18080 6.24799 6.42954 6.52323 6.70855 6.94872 7.21367 7.80886 7.89412 8.27690 8.51113 8.86690 9.66050 10.03008 11.16248 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.004491 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.583196 B = 6233.064092 C = 6877.603841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.111 3.889 4 H 0.068 0.932 5 C -0.141 4.141 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.104 4.104 10 H 0.101 0.899 11 C 0.523 3.477 12 O -0.550 6.550 13 N -0.600 5.600 14 C 0.098 3.902 15 C 0.112 3.888 16 N -0.605 5.605 17 C -0.264 4.264 18 H 0.087 0.913 19 C 0.026 3.974 20 N -0.907 5.907 21 Si 0.883 3.117 22 H -0.286 1.286 23 H -0.302 1.302 24 H -0.272 1.272 25 C 0.133 3.867 26 C 0.086 3.914 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.084 0.916 42 H 0.264 0.736 43 H 0.075 0.925 44 H 0.028 0.972 45 H 0.070 0.930 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 12.833 15.787 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.052 3.948 4 H 0.086 0.914 5 C -0.179 4.179 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.149 4.149 9 C -0.126 4.126 10 H 0.119 0.881 11 C 0.311 3.689 12 O -0.429 6.429 13 N -0.332 5.332 14 C -0.026 4.026 15 C -0.014 4.014 16 N -0.329 5.329 17 C -0.392 4.392 18 H 0.105 0.895 19 C -0.173 4.173 20 N -0.549 5.549 21 Si 0.713 3.287 22 H -0.214 1.214 23 H -0.230 1.230 24 H -0.197 1.197 25 C 0.006 3.994 26 C -0.038 4.038 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.089 0.911 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.420 12.555 15.364 22.411 hybrid contribution -0.914 -0.645 -0.061 1.120 sum -11.334 11.910 15.303 22.461 Atomic orbital electron populations 1.22696 0.81183 1.02398 0.99602 1.87901 1.19658 1.27175 1.94887 1.21819 0.93349 0.85414 0.94186 0.91393 1.22062 1.01513 0.97235 0.97062 1.21515 0.96826 0.96519 1.00688 1.21566 0.97382 1.01700 0.95035 1.21583 1.01481 0.94030 0.97814 1.21428 0.98243 0.99089 0.93799 0.88090 1.20337 0.84173 0.77140 0.87262 1.90615 1.24253 1.55707 1.72296 1.47986 1.06813 1.60551 1.17882 1.22190 1.01302 0.96324 0.82779 1.21769 0.86339 0.93858 0.99441 1.44278 1.02476 1.72315 1.13818 1.18918 0.89989 1.14098 1.16176 0.89508 1.25284 0.97114 0.97681 0.97235 1.69820 1.37152 1.33344 1.14612 0.86992 0.82731 0.80633 0.78324 1.21390 1.23005 1.19683 1.21312 0.99307 0.91148 0.87619 1.22467 0.82412 1.00448 0.98517 0.94718 0.93630 0.90061 0.90933 0.91662 0.91528 0.91861 0.91345 0.91292 0.90269 0.91214 0.89904 0.91362 0.95207 0.89811 0.92657 0.90618 0.95400 0.91128 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.82 101.05 1.09 1.54 16 2 O -0.38 -5.56 9.67 -44.54 -0.43 -5.99 16 3 C 0.11 1.38 1.58 -26.73 -0.04 1.33 16 4 H 0.07 0.89 7.57 -51.93 -0.39 0.49 16 5 C -0.14 -1.32 5.54 -26.73 -0.15 -1.46 16 6 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 7 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 8 C -0.11 -1.11 4.86 -26.73 -0.13 -1.24 16 9 C -0.10 -1.34 1.41 -91.77 -0.13 -1.46 16 10 H 0.10 1.27 7.08 -51.93 -0.37 0.90 16 11 C 0.52 8.86 6.63 -10.99 -0.07 8.79 16 12 O -0.55 -10.91 15.14 -3.76 -0.06 -10.96 16 13 N -0.60 -10.50 2.95 -172.49 -0.51 -11.01 16 14 C 0.10 1.91 6.58 -3.59 -0.02 1.89 16 15 C 0.11 2.52 4.36 -3.60 -0.02 2.50 16 16 N -0.60 -14.17 2.74 -172.04 -0.47 -14.64 16 17 C -0.26 -7.21 10.03 -15.06 -0.15 -7.36 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.03 0.75 5.25 -17.43 -0.09 0.66 16 20 N -0.91 -27.48 13.97 55.49 0.78 -26.70 16 21 Si 0.88 22.53 24.35 -169.99 -4.14 18.39 16 22 H -0.29 -7.04 6.49 56.52 0.37 -6.68 16 23 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 24 H -0.27 -6.95 6.80 56.52 0.38 -6.57 16 25 C 0.13 2.49 6.67 -3.60 -0.02 2.47 16 26 C 0.09 1.32 5.63 -3.60 -0.02 1.30 16 27 H 0.03 0.32 7.87 -51.93 -0.41 -0.08 16 28 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.77 6.28 -51.93 -0.33 0.44 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.61 7.03 -51.93 -0.36 1.25 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.03 0.69 7.26 -51.93 -0.38 0.32 16 41 H 0.08 2.02 4.31 -51.93 -0.22 1.80 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.08 0.95 4.68 -51.93 -0.24 0.71 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -32.83 344.16 -7.50 -40.33 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.78 Total: -1.42 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.07 Total: 6.81 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.20 Total: -52.35 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.49 Total: -16.95 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.83 -7.50 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340572434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.568 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds