Wall clock time and date at job start Tue Mar 31 2020 03:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99555 * 2 1 4 4 H 1.08998 * 109.47168 * 329.99275 * 3 2 1 5 5 C 1.53002 * 109.47043 * 89.99968 * 3 2 1 6 6 C 1.52995 * 109.46928 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47288 * 299.99919 * 6 5 3 8 8 C 1.52995 * 109.47147 * 59.99866 * 7 6 5 9 9 C 1.53003 * 109.47353 * 300.00074 * 8 7 6 10 10 H 1.08998 * 109.47000 * 300.00431 * 9 8 7 11 11 C 1.50697 * 109.47104 * 179.97438 * 9 8 7 12 12 O 1.21289 * 119.99942 * 256.74830 * 11 9 8 13 13 N 1.34777 * 120.00034 * 76.74957 * 11 9 8 14 14 C 1.46965 * 120.59481 * 173.93046 * 13 11 9 15 15 C 1.53377 * 108.63219 * 235.20235 * 14 13 11 16 16 N 1.46961 * 108.63676 * 310.57800 * 15 14 13 17 17 C 1.36939 * 120.59556 * 235.23009 * 16 15 14 18 18 H 1.07994 * 120.00546 * 151.82491 * 17 16 15 19 19 C 1.38820 * 119.99285 * 331.82978 * 17 16 15 20 20 N 1.31618 * 119.99425 * 160.36871 * 19 17 16 21 21 Si 1.86802 * 120.00175 * 340.35915 * 19 17 16 22 22 H 1.48501 * 109.46707 * 89.94112 * 21 19 17 23 23 H 1.48495 * 109.47088 * 209.94086 * 21 19 17 24 24 H 1.48502 * 109.46985 * 329.94390 * 21 19 17 25 25 C 1.46968 * 118.81176 * 55.22118 * 16 15 14 26 26 C 1.46969 * 120.59281 * 353.90591 * 13 11 9 27 27 H 1.09000 * 109.47703 * 300.00374 * 1 2 3 28 28 H 1.09004 * 109.46827 * 60.00509 * 1 2 3 29 29 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47214 * 59.99509 * 5 3 2 31 31 H 1.09004 * 109.46564 * 299.99728 * 5 3 2 32 32 H 1.09002 * 109.47209 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47332 * 59.99877 * 6 5 3 34 34 H 1.09001 * 109.46899 * 300.00223 * 7 6 5 35 35 H 1.09001 * 109.47390 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47499 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.46929 * 60.00375 * 8 7 6 38 38 H 1.08998 * 109.60816 * 354.94491 * 14 13 11 39 39 H 1.08994 * 109.61253 * 115.46022 * 14 13 11 40 40 H 1.09002 * 109.60467 * 70.32170 * 15 14 13 41 41 H 1.08999 * 109.61008 * 190.83050 * 15 14 13 42 42 H 0.97007 * 119.99448 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.60836 * 185.02950 * 25 16 15 44 44 H 1.08997 * 109.74692 * 64.61155 * 25 16 15 45 45 H 1.09001 * 109.60690 * 244.54354 * 26 13 11 46 46 H 1.08999 * 109.60946 * 5.05032 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 2.8403 3.1689 1.4425 7 6 4.1891 3.1263 0.7214 8 6 3.9817 2.6603 -0.7210 9 6 3.3590 1.2627 -0.7210 10 1 4.0239 0.5687 -0.2070 11 6 3.1542 0.8041 -2.1418 12 8 2.0455 0.8283 -2.6331 13 7 4.2030 0.3670 -2.8666 14 6 4.0005 -0.2068 -4.2044 15 6 4.6322 -1.6040 -4.2391 16 7 5.9988 -1.5150 -3.7060 17 6 7.0646 -1.9586 -4.4426 18 1 8.0397 -1.5162 -4.3022 19 6 6.8914 -2.9771 -5.3699 20 7 7.7726 -3.1472 -6.3326 21 14 5.4079 -4.1061 -5.2512 22 1 4.2863 -3.5340 -6.0386 23 1 5.7597 -5.4441 -5.7907 24 1 4.9984 -4.2375 -3.8298 25 6 6.2012 -0.9411 -2.3682 26 6 5.5697 0.4560 -2.3336 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 2.8828 1.0776 1.9564 31 1 1.2566 1.8015 1.9563 32 1 2.9885 3.5007 2.4702 33 1 2.1754 3.8631 0.9285 34 1 4.8540 2.4321 1.2354 35 1 4.6330 4.1218 0.7218 36 1 4.9426 2.6294 -1.2346 37 1 3.3168 3.3544 -1.2350 38 1 2.9333 -0.2825 -4.4123 39 1 4.4770 0.4286 -4.9509 40 1 4.0440 -2.2866 -3.6258 41 1 4.6632 -1.9661 -5.2668 42 1 7.6518 -3.8591 -6.9804 43 1 7.2685 -0.8654 -2.1603 44 1 5.7269 -1.5758 -1.6196 45 1 6.1578 1.1387 -2.9469 46 1 5.5386 0.8180 -1.3059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340572434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:46 Heat of formation + Delta-G solvation = -80.454781 kcal Electronic energy + Delta-G solvation = -25919.180259 eV Core-core repulsion = 22422.486649 eV Total energy + Delta-G solvation = -3496.693610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.68525 -39.72987 -38.41210 -37.34053 -35.68114 -33.55037 -32.83991 -31.61751 -30.93193 -28.89665 -27.38746 -25.58247 -25.20288 -24.01685 -23.20195 -22.27403 -20.93587 -20.17234 -18.82788 -17.99571 -17.72771 -17.18467 -17.02422 -16.34569 -16.10302 -16.02344 -15.95742 -15.43220 -15.15106 -14.85776 -14.64111 -14.55241 -14.30859 -14.07947 -13.98697 -13.85171 -13.38804 -13.08657 -12.86719 -12.65285 -12.54328 -12.32729 -12.26297 -11.99902 -11.95322 -11.84471 -11.77491 -11.60842 -11.45977 -11.28060 -10.91280 -10.65762 -10.35021 -9.87807 -8.88330 -8.20095 -5.53305 1.25426 1.37511 1.45150 1.62713 1.97650 2.36859 2.77958 3.02211 3.26461 3.39150 3.63451 3.97381 3.98683 4.05419 4.16921 4.20263 4.21796 4.24728 4.27399 4.37093 4.41948 4.44518 4.49329 4.52842 4.55092 4.56153 4.66541 4.79212 4.81881 4.85737 4.89776 4.93195 5.05265 5.14459 5.15616 5.20487 5.29100 5.33431 5.48355 5.51781 5.82272 6.09837 6.27960 6.47809 6.84208 7.16724 7.55485 7.97436 8.99372 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.004491 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.583196 B = 6233.064092 C = 6877.603841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.408 6.408 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.133 4.133 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.108 4.108 9 C -0.099 4.099 10 H 0.109 0.891 11 C 0.518 3.482 12 O -0.583 6.583 13 N -0.606 5.606 14 C 0.107 3.893 15 C 0.113 3.887 16 N -0.618 5.618 17 C -0.246 4.246 18 H 0.066 0.934 19 C -0.026 4.026 20 N -0.951 5.951 21 Si 0.937 3.063 22 H -0.276 1.276 23 H -0.308 1.308 24 H -0.272 1.272 25 C 0.126 3.874 26 C 0.096 3.904 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.064 0.936 42 H 0.262 0.738 43 H 0.085 0.915 44 H 0.033 0.967 45 H 0.076 0.924 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 14.503 18.514 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.327 6.327 3 C 0.049 3.951 4 H 0.073 0.927 5 C -0.171 4.171 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.145 4.145 9 C -0.120 4.120 10 H 0.127 0.873 11 C 0.308 3.692 12 O -0.464 6.464 13 N -0.338 5.338 14 C -0.017 4.017 15 C -0.013 4.013 16 N -0.343 5.343 17 C -0.376 4.376 18 H 0.084 0.916 19 C -0.221 4.221 20 N -0.597 5.597 21 Si 0.767 3.233 22 H -0.203 1.203 23 H -0.236 1.236 24 H -0.197 1.197 25 C 0.001 3.999 26 C -0.027 4.027 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.051 0.949 45 H 0.094 0.906 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.999 14.258 18.141 25.561 hybrid contribution -0.756 -1.106 -0.866 1.595 sum -11.755 13.152 17.275 24.689 Atomic orbital electron populations 1.22783 0.80133 1.03006 1.00117 1.87846 1.21011 1.28685 1.95157 1.21974 0.92640 0.84414 0.96085 0.92662 1.22013 1.02230 0.98254 0.94611 1.21534 0.96639 0.95249 1.01910 1.21574 0.97678 1.02850 0.93115 1.21617 1.01212 0.91931 0.99777 1.21536 0.99118 1.00839 0.90542 0.87304 1.21154 0.83314 0.76111 0.88611 1.90599 1.25563 1.56917 1.73298 1.48099 1.07971 1.60530 1.17168 1.21882 1.00741 0.94658 0.84451 1.21672 0.86051 0.95499 0.98045 1.44411 1.01787 1.72483 1.15570 1.18919 0.90263 1.12892 1.15495 0.91641 1.25800 0.99540 0.99297 0.97502 1.69925 1.39446 1.34415 1.15933 0.86103 0.80478 0.78637 0.78120 1.20310 1.23629 1.19737 1.21563 1.00526 0.92736 0.85105 1.22486 0.80973 0.98284 1.00985 0.92210 0.95049 0.89511 0.90767 0.90931 0.89580 0.91859 0.90402 0.89512 0.89645 0.91861 0.90155 0.91311 0.95864 0.91799 0.92857 0.89663 0.94931 0.90575 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.82 113.37 1.23 2.03 16 2 O -0.41 -11.49 9.67 -140.08 -1.35 -12.84 16 3 C 0.11 2.45 1.58 30.60 0.05 2.50 16 4 H 0.06 1.39 7.57 -2.39 -0.02 1.37 16 5 C -0.13 -2.08 5.54 30.59 0.17 -1.91 16 6 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 7 C -0.11 -1.28 5.92 30.59 0.18 -1.09 16 8 C -0.11 -1.79 4.86 30.59 0.15 -1.64 16 9 C -0.10 -2.29 1.41 -11.54 -0.02 -2.31 16 10 H 0.11 2.36 7.08 -2.39 -0.02 2.34 16 11 C 0.52 16.80 6.63 87.66 0.58 17.38 16 12 O -0.58 -22.90 15.14 5.84 0.09 -22.81 16 13 N -0.61 -20.18 2.95 -818.02 -2.41 -22.59 16 14 C 0.11 4.13 6.58 86.42 0.57 4.70 16 15 C 0.11 5.05 4.36 86.42 0.38 5.42 16 16 N -0.62 -28.50 2.74 -698.21 -1.91 -30.41 16 17 C -0.25 -13.54 10.03 84.03 0.84 -12.70 16 18 H 0.07 3.83 8.06 -2.91 -0.02 3.81 16 19 C -0.03 -1.50 5.25 84.86 0.45 -1.06 16 20 N -0.95 -58.94 13.97 21.65 0.30 -58.64 16 21 Si 0.94 47.28 24.35 68.60 1.67 48.95 16 22 H -0.28 -13.32 6.49 99.48 0.65 -12.67 16 23 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 24 H -0.27 -13.59 6.80 99.48 0.68 -12.91 16 25 C 0.13 4.46 6.67 86.41 0.58 5.04 16 26 C 0.10 2.68 5.63 86.41 0.49 3.17 16 27 H 0.06 1.01 7.87 -2.39 -0.02 0.99 16 28 H 0.03 0.77 8.09 -2.39 -0.02 0.76 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.03 7.87 -2.38 -0.02 1.01 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 1.32 6.28 -2.39 -0.02 1.30 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 3.12 7.03 -2.39 -0.02 3.11 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.02 1.07 7.26 -2.39 -0.02 1.05 16 41 H 0.06 3.09 4.31 -2.39 -0.01 3.08 16 42 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 43 H 0.09 2.85 7.93 -2.39 -0.02 2.83 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.12 2.39 4.68 -2.39 -0.01 2.38 16 Total: -1.00 -72.06 344.16 3.06 -69.00 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.86 Total: 10.94 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 5.82 Total: 18.41 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.02 Total: -111.64 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -1.27 Total: -35.66 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.67 Total: 48.95 kcal Total: -72.06 3.06 -69.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340572434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.452 kcal (2) G-P(sol) polarization free energy of solvation -72.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds