Wall clock time and date at job start Tue Mar 31 2020 03:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 H 1.09002 * 109.46923 * 329.99972 * 3 2 1 5 5 C 1.52993 * 109.47009 * 90.00335 * 3 2 1 6 6 C 1.53004 * 109.47017 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47142 * 299.99755 * 6 5 3 8 8 C 1.53006 * 109.47301 * 59.99908 * 7 6 5 9 9 H 1.08992 * 109.47449 * 180.02562 * 8 7 6 10 10 C 1.50708 * 109.46708 * 59.99782 * 8 7 6 11 11 O 1.21279 * 119.99568 * 243.91591 * 10 8 7 12 12 N 1.34772 * 120.00058 * 63.92138 * 10 8 7 13 13 C 1.46973 * 120.59327 * 4.48519 * 12 10 8 14 14 C 1.53811 * 108.39755 * 124.76063 * 13 12 10 15 15 N 1.46963 * 108.58197 * 49.63476 * 14 13 12 16 16 C 1.36936 * 120.59486 * 124.66674 * 15 14 13 17 17 H 1.07995 * 120.00075 * 207.79501 * 16 15 14 18 18 C 1.38815 * 119.99975 * 27.79247 * 16 15 14 19 19 N 1.31619 * 119.99761 * 16.75870 * 18 16 15 20 20 Si 1.86797 * 120.00105 * 196.76087 * 18 16 15 21 21 H 1.48497 * 109.47483 * 89.99981 * 20 18 16 22 22 H 1.48506 * 109.47049 * 209.99972 * 20 18 16 23 23 H 1.48500 * 109.47294 * 329.99524 * 20 18 16 24 24 C 1.46966 * 118.81525 * 304.64996 * 15 14 13 25 25 C 1.46961 * 120.59652 * 184.76633 * 12 10 8 26 26 C 1.52999 * 109.47190 * 300.00450 * 8 7 6 27 27 H 1.09001 * 109.47369 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.46761 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46868 * 299.99782 * 1 2 3 30 30 H 1.09002 * 109.47574 * 60.00036 * 5 3 2 31 31 H 1.09001 * 109.47188 * 299.99879 * 5 3 2 32 32 H 1.09002 * 109.46906 * 59.99642 * 6 5 3 33 33 H 1.08999 * 109.47345 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47490 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47674 * 300.00253 * 7 6 5 36 36 H 1.08998 * 109.60672 * 244.54265 * 13 12 10 37 37 H 1.08997 * 109.60428 * 5.05394 * 13 12 10 38 38 H 1.09000 * 109.73905 * 289.84863 * 14 13 12 39 39 H 1.08998 * 109.67102 * 169.38664 * 14 13 12 40 40 H 0.96998 * 119.99981 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.60862 * 295.48457 * 24 15 14 42 42 H 1.09000 * 109.75588 * 175.04974 * 24 15 14 43 43 H 1.08999 * 109.61053 * 354.94531 * 25 12 10 44 44 H 1.09003 * 109.61169 * 115.28146 * 25 12 10 45 45 H 1.08998 * 109.47725 * 180.02562 * 26 8 7 46 46 H 1.09002 * 109.46590 * 299.99759 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2177 1.7713 1.4424 6 6 2.8406 3.1688 1.4424 7 6 4.1893 3.1260 0.7214 8 6 3.9819 2.6600 -0.7212 9 1 4.9428 2.6291 -1.2347 10 6 3.0626 3.6198 -1.4317 11 8 1.9814 3.2413 -1.8302 12 7 3.4419 4.8986 -1.6244 13 6 4.7865 5.3467 -1.2354 14 6 5.4631 5.9760 -2.4650 15 7 4.5375 6.9489 -3.0623 16 6 4.9228 8.2482 -3.2580 17 1 4.1843 9.0362 -3.2587 18 6 6.2628 8.5526 -3.4554 19 7 7.1122 7.6020 -3.7827 20 14 6.8602 10.3112 -3.2566 21 1 7.2728 10.5376 -1.8481 22 1 8.0190 10.5450 -4.1555 23 1 5.7640 11.2492 -3.6082 24 6 3.1910 6.5022 -3.4461 25 6 2.5163 5.8715 -2.2216 26 6 3.3589 1.2626 -0.7212 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.8830 1.0774 1.9563 31 1 1.2569 1.8014 1.9563 32 1 2.1757 3.8629 0.9285 33 1 2.9881 3.5009 2.4701 34 1 4.6330 4.1216 0.7210 35 1 4.8543 2.4318 1.2352 36 1 4.7093 6.0863 -0.4384 37 1 5.3709 4.4936 -0.8909 38 1 5.6981 5.1999 -3.1934 39 1 6.3794 6.4819 -2.1609 40 1 8.0485 7.8145 -3.9203 41 1 3.2643 5.7635 -4.2442 42 1 2.6040 7.3542 -3.7889 43 1 1.6012 5.3651 -2.5285 44 1 2.2788 6.6459 -1.4921 45 1 3.2116 0.9304 -1.7488 46 1 4.0239 0.5685 -0.2072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340573937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:26 Heat of formation + Delta-G solvation = -60.655308 kcal Electronic energy + Delta-G solvation = -25817.790562 eV Core-core repulsion = 22321.955522 eV Total energy + Delta-G solvation = -3495.835040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.62636 -38.38964 -36.85436 -35.97573 -33.94030 -31.72419 -30.91250 -30.20850 -29.71807 -26.99784 -26.42941 -24.22396 -23.27652 -22.54637 -22.23819 -21.00741 -19.85335 -18.38860 -17.04346 -16.70290 -15.97165 -15.73601 -15.50093 -15.00913 -14.79629 -14.73760 -14.38283 -13.76185 -13.70421 -13.48861 -13.29601 -13.20644 -13.04166 -12.55079 -12.27919 -12.11098 -11.93918 -11.73322 -11.52651 -11.31903 -11.01316 -10.88436 -10.84688 -10.75985 -10.59639 -10.43286 -10.34324 -10.24732 -10.01042 -9.86830 -9.42030 -9.05102 -8.63105 -8.24495 -6.75434 -5.88997 -3.33664 2.95439 3.31556 3.38559 3.39813 3.43795 3.77120 4.40952 4.63481 4.69621 4.77181 5.03904 5.15942 5.16752 5.22841 5.29220 5.32879 5.40249 5.41373 5.48501 5.56457 5.63063 5.66192 5.75376 5.79721 5.84740 5.90734 5.96683 6.00911 6.07591 6.10075 6.14340 6.17387 6.26584 6.33858 6.36206 6.41925 6.75855 6.90916 7.18232 7.29601 7.44168 7.68395 7.91090 8.32083 8.55376 9.08553 9.70880 10.27558 11.18489 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.003698 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.809048 B = 7570.631148 C = 7834.531465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.072 3.928 4 H 0.099 0.901 5 C -0.138 4.138 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.106 4.106 9 H 0.102 0.898 10 C 0.517 3.483 11 O -0.558 6.558 12 N -0.594 5.594 13 C 0.077 3.923 14 C 0.156 3.844 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.132 3.868 25 C 0.095 3.905 26 C -0.091 4.091 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.103 0.897 40 H 0.255 0.745 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 -10.822 10.258 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.015 3.985 4 H 0.116 0.884 5 C -0.176 4.176 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.127 4.127 9 H 0.120 0.880 10 C 0.305 3.695 11 O -0.438 6.438 12 N -0.325 5.325 13 C -0.047 4.047 14 C 0.029 3.971 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.005 3.995 25 C -0.029 4.029 26 C -0.129 4.129 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.454 -11.117 9.982 16.697 hybrid contribution 0.328 1.170 0.083 1.218 sum -7.127 -9.947 10.065 15.844 Atomic orbital electron populations 1.22709 0.81637 1.01966 0.99952 1.87815 1.19268 1.28775 1.95091 1.22598 0.96141 0.84849 0.94875 0.88365 1.22027 1.00857 0.96922 0.97787 1.21488 0.96626 0.96804 1.00582 1.21719 0.97932 1.02623 0.93281 1.21313 0.99759 0.94498 0.97164 0.88038 1.20497 0.87274 0.82564 0.79144 1.90528 1.24105 1.76798 1.52362 1.48053 1.15461 1.08841 1.60135 1.22898 0.82296 0.98935 1.00576 1.21309 0.94102 0.91567 0.90121 1.43990 1.09802 1.07704 1.69905 1.19235 0.92267 0.83130 1.43792 0.91423 1.25065 0.97458 0.97565 0.99512 1.69999 1.03460 1.31754 1.49529 0.86242 0.78278 0.84334 0.77622 1.21356 1.21716 1.20399 1.21280 0.88102 0.97125 0.92996 1.22184 0.92773 0.90954 0.96995 1.21293 0.95399 0.94651 1.01526 0.93905 0.90203 0.94557 0.91537 0.92312 0.91907 0.91499 0.90271 0.90720 0.91801 0.90600 0.95899 0.87949 0.93460 0.95892 0.91633 0.90097 0.92080 0.90874 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 101.05 1.09 1.47 16 2 O -0.39 -5.38 10.35 -35.23 -0.36 -5.75 16 3 C 0.07 0.98 2.32 -26.73 -0.06 0.92 16 4 H 0.10 1.56 5.02 -51.93 -0.26 1.30 16 5 C -0.14 -1.61 5.54 -26.73 -0.15 -1.75 16 6 C -0.12 -1.34 5.70 -26.73 -0.15 -1.50 16 7 C -0.12 -1.32 5.06 -26.73 -0.14 -1.46 16 8 C -0.11 -1.40 2.17 -91.76 -0.20 -1.60 16 9 H 0.10 1.27 7.32 -51.93 -0.38 0.89 16 10 C 0.52 8.56 5.56 -10.98 -0.06 8.49 16 11 O -0.56 -10.49 12.94 5.56 0.07 -10.42 16 12 N -0.59 -10.30 2.94 -172.21 -0.51 -10.80 16 13 C 0.08 1.32 5.11 -3.36 -0.02 1.30 16 14 C 0.16 3.44 5.53 -3.37 -0.02 3.42 16 15 N -0.59 -14.16 2.97 -171.77 -0.51 -14.67 16 16 C -0.25 -6.68 9.59 -15.06 -0.14 -6.83 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 19 N -0.90 -25.01 11.12 55.49 0.62 -24.40 16 20 Si 0.91 20.84 29.59 -169.99 -5.03 15.81 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.13 2.73 6.67 -3.59 -0.02 2.71 16 25 C 0.10 1.71 6.60 -3.60 -0.02 1.69 16 26 C -0.09 -1.20 4.76 -26.73 -0.13 -1.32 16 27 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 32 H 0.06 0.84 7.22 -51.93 -0.37 0.47 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.90 5.60 -51.93 -0.29 0.61 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.09 4.83 -51.93 -0.25 0.84 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 2.50 5.92 -51.93 -0.31 2.20 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 43 H 0.08 1.43 6.99 -51.93 -0.36 1.06 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -29.67 343.83 -8.30 -37.97 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.65 Total: 1.54 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.11 Total: 5.53 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.40 Total: -49.87 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.29 Total: -16.17 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.67 -8.30 -37.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340573937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.684 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds