Wall clock time and date at job start Tue Mar 31 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 H 1.09002 * 109.46923 * 329.99972 * 3 2 1 5 5 C 1.52993 * 109.47009 * 90.00335 * 3 2 1 6 6 C 1.53004 * 109.47017 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47142 * 299.99755 * 6 5 3 8 8 C 1.53006 * 109.47301 * 59.99908 * 7 6 5 9 9 H 1.08992 * 109.47449 * 180.02562 * 8 7 6 10 10 C 1.50708 * 109.46708 * 59.99782 * 8 7 6 11 11 O 1.21279 * 119.99568 * 243.91591 * 10 8 7 12 12 N 1.34772 * 120.00058 * 63.92138 * 10 8 7 13 13 C 1.46973 * 120.59327 * 4.48519 * 12 10 8 14 14 C 1.53811 * 108.39755 * 124.76063 * 13 12 10 15 15 N 1.46963 * 108.58197 * 49.63476 * 14 13 12 16 16 C 1.36936 * 120.59486 * 124.66674 * 15 14 13 17 17 H 1.07995 * 120.00075 * 207.79501 * 16 15 14 18 18 C 1.38815 * 119.99975 * 27.79247 * 16 15 14 19 19 N 1.31619 * 119.99761 * 16.75870 * 18 16 15 20 20 Si 1.86797 * 120.00105 * 196.76087 * 18 16 15 21 21 H 1.48497 * 109.47483 * 89.99981 * 20 18 16 22 22 H 1.48506 * 109.47049 * 209.99972 * 20 18 16 23 23 H 1.48500 * 109.47294 * 329.99524 * 20 18 16 24 24 C 1.46966 * 118.81525 * 304.64996 * 15 14 13 25 25 C 1.46961 * 120.59652 * 184.76633 * 12 10 8 26 26 C 1.52999 * 109.47190 * 300.00450 * 8 7 6 27 27 H 1.09001 * 109.47369 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.46761 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46868 * 299.99782 * 1 2 3 30 30 H 1.09002 * 109.47574 * 60.00036 * 5 3 2 31 31 H 1.09001 * 109.47188 * 299.99879 * 5 3 2 32 32 H 1.09002 * 109.46906 * 59.99642 * 6 5 3 33 33 H 1.08999 * 109.47345 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47490 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47674 * 300.00253 * 7 6 5 36 36 H 1.08998 * 109.60672 * 244.54265 * 13 12 10 37 37 H 1.08997 * 109.60428 * 5.05394 * 13 12 10 38 38 H 1.09000 * 109.73905 * 289.84863 * 14 13 12 39 39 H 1.08998 * 109.67102 * 169.38664 * 14 13 12 40 40 H 0.96998 * 119.99981 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.60862 * 295.48457 * 24 15 14 42 42 H 1.09000 * 109.75588 * 175.04974 * 24 15 14 43 43 H 1.08999 * 109.61053 * 354.94531 * 25 12 10 44 44 H 1.09003 * 109.61169 * 115.28146 * 25 12 10 45 45 H 1.08998 * 109.47725 * 180.02562 * 26 8 7 46 46 H 1.09002 * 109.46590 * 299.99759 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2177 1.7713 1.4424 6 6 2.8406 3.1688 1.4424 7 6 4.1893 3.1260 0.7214 8 6 3.9819 2.6600 -0.7212 9 1 4.9428 2.6291 -1.2347 10 6 3.0626 3.6198 -1.4317 11 8 1.9814 3.2413 -1.8302 12 7 3.4419 4.8986 -1.6244 13 6 4.7865 5.3467 -1.2354 14 6 5.4631 5.9760 -2.4650 15 7 4.5375 6.9489 -3.0623 16 6 4.9228 8.2482 -3.2580 17 1 4.1843 9.0362 -3.2587 18 6 6.2628 8.5526 -3.4554 19 7 7.1122 7.6020 -3.7827 20 14 6.8602 10.3112 -3.2566 21 1 7.2728 10.5376 -1.8481 22 1 8.0190 10.5450 -4.1555 23 1 5.7640 11.2492 -3.6082 24 6 3.1910 6.5022 -3.4461 25 6 2.5163 5.8715 -2.2216 26 6 3.3589 1.2626 -0.7212 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.8830 1.0774 1.9563 31 1 1.2569 1.8014 1.9563 32 1 2.1757 3.8629 0.9285 33 1 2.9881 3.5009 2.4701 34 1 4.6330 4.1216 0.7210 35 1 4.8543 2.4318 1.2352 36 1 4.7093 6.0863 -0.4384 37 1 5.3709 4.4936 -0.8909 38 1 5.6981 5.1999 -3.1934 39 1 6.3794 6.4819 -2.1609 40 1 8.0485 7.8145 -3.9203 41 1 3.2643 5.7635 -4.2442 42 1 2.6040 7.3542 -3.7889 43 1 1.6012 5.3651 -2.5285 44 1 2.2788 6.6459 -1.4921 45 1 3.2116 0.9304 -1.7488 46 1 4.0239 0.5685 -0.2072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340573937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:25 Heat of formation + Delta-G solvation = -78.392709 kcal Electronic energy + Delta-G solvation = -25818.559713 eV Core-core repulsion = 22321.955522 eV Total energy + Delta-G solvation = -3496.604192 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84838 -39.59042 -38.33599 -37.06084 -35.63226 -33.36210 -32.21448 -31.62186 -30.83120 -28.69161 -27.32661 -25.83585 -24.75278 -23.93827 -23.26416 -22.26210 -21.24814 -19.87347 -18.50473 -17.94859 -17.44502 -16.87921 -16.72629 -16.55073 -16.06161 -15.96647 -15.51926 -15.46872 -15.25548 -14.88866 -14.76295 -14.46659 -14.11976 -13.80176 -13.40869 -13.23145 -13.18847 -13.02522 -13.00062 -12.67986 -12.55360 -12.48101 -12.22578 -12.02651 -11.93233 -11.84514 -11.78842 -11.66620 -11.43443 -11.31816 -10.61340 -10.44714 -10.28104 -9.76472 -8.65679 -7.88171 -5.36737 1.49504 1.51106 1.59508 1.65497 2.07199 2.51686 2.81634 3.26011 3.49513 3.59739 3.74279 3.77566 4.09260 4.15314 4.21283 4.23841 4.27758 4.38158 4.40855 4.49149 4.53109 4.54877 4.56300 4.61403 4.66777 4.70080 4.78211 4.80720 4.81504 4.95466 5.03168 5.06434 5.12173 5.13783 5.21879 5.27852 5.30908 5.40574 5.56000 5.61372 5.68849 6.31931 6.35698 6.54336 7.11204 7.21723 7.78628 8.31820 9.16518 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033333 B = 0.003698 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.809048 B = 7570.631148 C = 7834.531465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.071 3.929 4 H 0.071 0.929 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.102 4.102 9 H 0.113 0.887 10 C 0.514 3.486 11 O -0.582 6.582 12 N -0.600 5.600 13 C 0.095 3.905 14 C 0.160 3.840 15 N -0.608 5.608 16 C -0.266 4.266 17 H 0.068 0.932 18 C -0.045 4.045 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.272 1.272 24 C 0.132 3.868 25 C 0.106 3.894 26 C -0.090 4.090 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.109 0.891 38 H -0.003 1.003 39 H 0.078 0.922 40 H 0.252 0.748 41 H 0.005 0.995 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 -11.234 12.470 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.014 3.986 4 H 0.088 0.912 5 C -0.170 4.170 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.123 4.123 9 H 0.131 0.869 10 C 0.305 3.695 11 O -0.463 6.463 12 N -0.331 5.331 13 C -0.028 4.028 14 C 0.034 3.966 15 N -0.332 5.332 16 C -0.396 4.396 17 H 0.086 0.914 18 C -0.241 4.241 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.207 1.207 22 H -0.224 1.224 23 H -0.197 1.197 24 C 0.006 3.994 25 C -0.018 4.018 26 C -0.128 4.128 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.015 0.985 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.023 0.977 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.355 -11.542 12.207 18.340 hybrid contribution 0.195 1.240 -0.685 1.430 sum -7.161 -10.303 11.522 17.035 Atomic orbital electron populations 1.22862 0.80408 1.03423 0.99963 1.87780 1.20685 1.28866 1.95237 1.22543 0.95668 0.84316 0.96048 0.91151 1.21974 1.01466 0.97225 0.96299 1.21478 0.96174 0.96073 1.01518 1.21759 0.98334 1.03378 0.91698 1.21386 0.99114 0.93456 0.98372 0.86904 1.21157 0.87420 0.82388 0.78562 1.90534 1.25473 1.77083 1.53251 1.48111 1.15337 1.09208 1.60426 1.22678 0.82083 1.00090 0.97965 1.21171 0.93676 0.90436 0.91363 1.44258 1.10919 1.07513 1.70501 1.19530 0.92535 0.84266 1.43226 0.91398 1.25773 0.97589 1.01048 0.99681 1.70148 1.03408 1.33487 1.50787 0.85244 0.77400 0.80192 0.77417 1.20708 1.22412 1.19709 1.21333 0.87178 0.97007 0.93888 1.21959 0.92637 0.91298 0.95926 1.21301 0.95828 0.94976 1.00655 0.94958 0.88069 0.93499 0.90151 0.92007 0.94312 0.89395 0.90089 0.87905 0.91001 0.87272 0.98518 0.90349 0.93863 0.97679 0.91150 0.89865 0.91153 0.92871 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.82 113.37 1.23 1.85 16 2 O -0.41 -10.70 10.35 -148.98 -1.54 -12.24 16 3 C 0.07 1.85 2.32 30.59 0.07 1.92 16 4 H 0.07 2.23 5.02 -2.39 -0.01 2.22 16 5 C -0.13 -2.73 5.54 30.59 0.17 -2.56 16 6 C -0.11 -2.30 5.70 30.59 0.17 -2.13 16 7 C -0.11 -2.16 5.06 30.60 0.15 -2.01 16 8 C -0.10 -2.48 2.17 -11.54 -0.02 -2.50 16 9 H 0.11 2.51 7.32 -2.39 -0.02 2.49 16 10 C 0.51 16.56 5.56 87.66 0.49 17.05 16 11 O -0.58 -21.93 12.94 -3.03 -0.04 -21.97 16 12 N -0.60 -20.24 2.94 -817.14 -2.40 -22.64 16 13 C 0.10 3.13 5.11 86.56 0.44 3.58 16 14 C 0.16 7.13 5.53 86.56 0.48 7.61 16 15 N -0.61 -29.45 2.97 -697.35 -2.07 -31.52 16 16 C -0.27 -14.00 9.59 84.03 0.81 -13.20 16 17 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 18 C -0.05 -2.41 4.93 84.86 0.42 -1.99 16 19 N -0.93 -52.51 11.12 21.65 0.24 -52.27 16 20 Si 0.97 42.90 29.59 68.60 2.03 44.93 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 C 0.13 5.55 6.67 86.42 0.58 6.12 16 25 C 0.11 3.78 6.60 86.42 0.57 4.35 16 26 C -0.09 -2.22 4.76 30.60 0.15 -2.07 16 27 H 0.03 0.72 8.09 -2.39 -0.02 0.71 16 28 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.05 0.86 7.87 -2.39 -0.02 0.84 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.23 7.87 -2.39 -0.02 1.21 16 32 H 0.04 0.97 7.22 -2.39 -0.02 0.95 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.54 5.60 -2.39 -0.01 1.52 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.11 2.85 4.83 -2.39 -0.01 2.83 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.08 3.89 5.92 -2.39 -0.01 3.88 16 40 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 41 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.07 2.81 7.94 -2.39 -0.02 2.80 16 43 H 0.08 2.93 6.99 -2.39 -0.02 2.91 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 46 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -64.76 343.83 2.87 -61.89 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.95 Total: 17.79 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 5.70 Total: 16.03 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -4.23 Total: -106.43 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.58 Total: -34.21 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -64.76 2.87 -61.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340573937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.499 kcal (2) G-P(sol) polarization free energy of solvation -64.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds