Wall clock time and date at job start Tue Mar 31 2020 03:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47128 * 2 1 4 4 C 1.46506 * 119.99503 * 269.99876 * 3 2 1 5 5 C 1.50700 * 109.46829 * 269.99642 * 4 3 2 6 6 H 1.07993 * 120.00289 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99827 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99730 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99936 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47180 * 59.99710 * 9 7 5 11 11 H 1.48505 * 109.46884 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46829 * 299.99407 * 9 7 5 13 13 C 1.34770 * 120.00271 * 89.99899 * 3 2 1 14 14 O 1.21279 * 120.00206 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99938 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47112 * 180.02562 * 15 13 3 17 17 C 1.49627 * 110.99703 * 70.18687 * 16 15 13 18 18 C 1.50365 * 104.82856 * 114.66630 * 17 16 15 19 19 H 1.08997 * 109.71666 * 279.04509 * 18 17 16 20 20 C 1.51011 * 125.48775 * 144.39169 * 18 17 16 21 21 C 1.56400 * 101.60223 * 203.93222 * 20 18 17 22 22 C 1.55939 * 105.79282 * 25.00470 * 21 20 18 23 23 H 1.09005 * 110.49149 * 126.19030 * 22 21 20 24 24 O 1.42899 * 110.49280 * 248.84884 * 22 21 20 25 25 C 1.50300 * 104.16398 * 7.52036 * 22 21 20 26 26 H 1.09001 * 109.99249 * 80.52270 * 25 22 21 27 27 C 1.50097 * 111.00115 * 190.00053 * 16 15 13 28 28 H 1.08998 * 109.47099 * 300.00123 * 1 2 3 29 29 H 1.09003 * 109.46781 * 60.00417 * 1 2 3 30 30 H 1.09002 * 109.46833 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47524 * 239.99549 * 2 1 3 32 32 H 1.08998 * 109.47211 * 119.99382 * 2 1 3 33 33 H 1.08992 * 109.47186 * 29.99968 * 4 3 2 34 34 H 1.09000 * 109.46464 * 150.00146 * 4 3 2 35 35 H 0.97007 * 120.00071 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46885 * 60.00350 * 15 13 3 37 37 H 1.08998 * 109.46931 * 300.00359 * 15 13 3 38 38 H 1.08996 * 110.36866 * 355.82532 * 17 16 15 39 39 H 1.09007 * 110.36585 * 233.49727 * 17 16 15 40 40 H 1.09007 * 111.00199 * 322.00775 * 20 18 17 41 41 H 1.08997 * 111.00294 * 85.85484 * 20 18 17 42 42 H 1.08994 * 110.18357 * 265.92394 * 21 20 18 43 43 H 1.08993 * 110.24987 * 144.12027 * 21 20 18 44 44 H 0.96700 * 113.99861 * 294.74544 * 24 22 21 45 45 H 1.09000 * 110.85296 * 94.96587 * 27 16 15 46 46 H 1.08993 * 110.85377 * 331.33632 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3494 3.1263 -3.6177 9 14 5.9135 2.0962 -3.4170 10 1 6.1403 0.6396 -3.5952 11 1 6.1614 2.7973 -4.7024 12 1 6.8412 2.6188 -2.3819 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2066 3.5888 17 6 1.3060 3.3125 3.6880 18 6 0.6073 3.0819 4.9993 19 1 -0.1579 2.3151 4.8784 20 6 0.1146 4.1625 5.9321 21 6 0.0872 3.4074 7.3015 22 6 1.1266 2.2524 7.1702 23 1 1.8465 2.2921 7.9877 24 8 0.4660 0.9855 7.1448 25 6 1.8070 2.5175 5.8565 26 1 2.5691 3.2869 5.9801 27 6 2.3047 1.4664 4.8946 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.6755 3.5168 -4.4437 36 1 2.6212 0.4188 2.5303 37 1 0.9432 1.0127 2.5298 38 1 0.5949 3.2548 2.8639 39 1 1.8074 4.2804 3.6905 40 1 0.8112 5.0003 5.9619 41 1 -0.8839 4.4965 5.6502 42 1 -0.9066 2.9999 7.4864 43 1 0.3733 4.0808 8.1093 44 1 0.0099 0.7632 7.9680 45 1 3.3111 1.1428 5.1604 46 1 1.6205 0.6189 4.8579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344057453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:27 Heat of formation + Delta-G solvation = -89.404123 kcal Electronic energy + Delta-G solvation = -25040.528292 eV Core-core repulsion = 21543.446610 eV Total energy + Delta-G solvation = -3497.081682 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 3.91 seconds Orbital eigenvalues (eV) -41.69598 -40.46715 -37.71525 -36.84294 -35.32878 -34.86427 -31.78711 -31.26488 -30.64823 -29.12913 -26.93856 -26.68599 -24.74840 -24.02779 -22.35150 -21.27760 -20.86471 -19.73261 -18.64805 -18.37959 -17.82262 -17.22693 -16.97673 -16.51751 -16.09509 -15.88471 -15.50509 -15.36521 -14.74949 -14.54899 -14.47012 -14.33701 -14.00367 -13.67048 -13.62757 -13.33116 -13.26732 -13.14590 -13.06027 -12.64946 -12.54088 -12.50777 -12.24172 -12.13665 -11.97890 -11.90468 -11.80345 -11.72579 -11.48792 -11.07475 -10.70458 -10.64297 -10.52457 -9.44066 -9.28644 -8.22104 -6.37120 1.35618 1.40774 1.47847 1.87133 2.21791 2.40677 2.92525 2.98855 3.07021 3.47205 3.70072 3.77130 3.78496 4.05377 4.09567 4.19567 4.21505 4.31209 4.35734 4.41016 4.42872 4.53283 4.61856 4.63569 4.69316 4.77631 4.91874 4.92957 4.96380 4.99298 5.03848 5.07793 5.09619 5.17884 5.21155 5.35094 5.35421 5.43507 5.58163 5.79280 5.84333 5.96380 6.07595 6.70909 6.83207 6.99683 7.29099 7.54475 8.84755 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.003410 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.052938 B = 8208.823343 C = 8510.055702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.496 3.504 14 O -0.580 6.580 15 C 0.048 3.952 16 N -0.534 5.534 17 C 0.070 3.930 18 C -0.124 4.124 19 H 0.071 0.929 20 C -0.104 4.104 21 C -0.143 4.143 22 C 0.124 3.876 23 H 0.079 0.921 24 O -0.577 6.577 25 C -0.111 4.111 26 H 0.088 0.912 27 C 0.067 3.933 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.021 0.979 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.394 0.606 45 H 0.085 0.915 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 -6.947 24.127 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.285 3.715 14 O -0.459 6.459 15 C -0.083 4.083 16 N -0.258 5.258 17 C -0.057 4.057 18 C -0.144 4.144 19 H 0.089 0.911 20 C -0.142 4.142 21 C -0.181 4.181 22 C 0.065 3.935 23 H 0.097 0.903 24 O -0.385 6.385 25 C -0.130 4.130 26 H 0.106 0.894 27 C -0.059 4.059 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.039 0.961 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.244 0.756 45 H 0.103 0.897 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.129 -6.082 23.221 25.343 hybrid contribution -0.117 0.095 -0.496 0.518 sum -8.247 -5.986 22.726 24.906 Atomic orbital electron populations 1.22142 0.94720 1.03486 1.01398 1.21730 0.95193 0.81470 1.03860 1.48298 1.64314 1.15116 1.06169 1.18644 0.95228 0.91326 0.80374 1.21695 0.97919 1.32037 1.06546 0.92966 1.25880 1.02506 0.94434 0.96395 1.70052 1.37847 1.34214 1.14802 0.85456 0.78883 0.79088 0.77313 1.18321 1.20213 1.20449 1.21163 0.77419 0.86741 0.86225 1.90624 1.47010 1.20459 1.87828 1.22100 1.01936 0.96023 0.88228 1.64810 1.48180 1.10090 1.02756 1.21891 0.92352 0.95361 0.96110 1.22423 0.97642 1.00249 0.94059 0.91066 1.21781 1.01499 0.96682 0.94271 1.23684 1.00095 0.97254 0.97064 1.21707 0.93003 0.83313 0.95471 0.90304 1.86516 1.72506 1.36438 1.43075 1.22166 0.97254 0.98918 0.94652 0.89405 1.22218 1.01539 0.95433 0.86737 0.92709 0.94221 0.88471 0.90805 0.88443 0.96125 0.98878 0.92408 0.86500 0.90275 0.94497 0.92185 0.91072 0.91012 0.89852 0.89249 0.75565 0.89665 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 10.24 71.98 0.74 -3.45 16 2 C 0.10 3.21 5.93 86.38 0.51 3.72 16 3 N -0.61 -27.14 2.46 -826.14 -2.03 -29.17 16 4 C 0.27 15.01 5.16 85.63 0.44 15.45 16 5 C -0.54 -32.61 9.39 25.60 0.24 -32.37 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 9 Si 0.97 46.33 29.54 68.60 2.03 48.36 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 C 0.50 22.21 7.23 87.66 0.63 22.85 16 14 O -0.58 -32.14 15.14 -3.02 -0.05 -32.18 16 15 C 0.05 1.55 3.65 85.56 0.31 1.86 16 16 N -0.53 -17.08 4.96 -893.42 -4.44 -21.52 16 17 C 0.07 2.20 5.56 84.92 0.47 2.67 16 18 C -0.12 -2.80 2.74 -10.56 -0.03 -2.83 16 19 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 20 C -0.10 -1.78 6.72 31.13 0.21 -1.57 16 21 C -0.14 -1.66 6.75 32.80 0.22 -1.44 16 22 C 0.12 1.71 4.16 30.74 0.13 1.84 16 23 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 24 O -0.58 -8.08 12.73 -148.98 -1.90 -9.97 16 25 C -0.11 -2.25 2.66 -10.61 -0.03 -2.28 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 C 0.07 1.59 6.29 85.00 0.53 2.13 16 28 H 0.05 1.37 7.22 -2.39 -0.02 1.36 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.49 8.07 -2.39 -0.02 2.48 16 32 H 0.10 2.46 6.44 -2.39 -0.02 2.44 16 33 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 34 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 35 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 36 H 0.12 3.22 7.35 -2.39 -0.02 3.20 16 37 H 0.08 2.17 7.10 -2.39 -0.02 2.15 16 38 H 0.04 1.28 7.31 -2.39 -0.02 1.27 16 39 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 0.83 8.01 -2.39 -0.02 0.82 16 43 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.39 1.93 9.12 -74.06 -0.68 1.26 16 45 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.06 1.44 7.56 -2.39 -0.02 1.42 16 Total: -1.00 -79.85 362.56 -0.97 -80.81 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.28 Total: 13.88 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.85 Total: 7.43 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -6.18 Total: -108.33 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.94 Total: -42.16 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -79.85 -0.97 -80.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344057453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.591 kcal (2) G-P(sol) polarization free energy of solvation -79.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.91 seconds