Wall clock time and date at job start Tue Mar 31 2020 03:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99878 * 2 1 4 4 H 1.08998 * 109.47076 * 346.08243 * 3 2 1 5 5 C 1.50699 * 109.46982 * 226.08211 * 3 2 1 6 6 O 1.21274 * 120.00532 * 355.00303 * 5 3 2 7 7 N 1.34782 * 119.99575 * 174.99960 * 5 3 2 8 8 C 1.46498 * 119.99553 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.46897 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.49717 * 304.93821 * 9 8 7 11 11 C 1.53042 * 109.49876 * 184.83902 * 9 8 7 12 12 C 1.53035 * 109.53640 * 178.68492 * 11 9 8 13 13 C 1.53193 * 109.31694 * 61.36379 * 12 11 9 14 14 N 1.46919 * 108.77600 * 305.36966 * 13 12 11 15 15 C 1.36944 * 120.62770 * 233.58684 * 14 13 12 16 16 H 1.07997 * 119.99824 * 146.04206 * 15 14 13 17 17 C 1.38810 * 119.99827 * 326.03911 * 15 14 13 18 18 N 1.31620 * 120.00229 * 343.80827 * 17 15 14 19 19 Si 1.86799 * 119.99909 * 163.80651 * 17 15 14 20 20 H 1.48503 * 109.46894 * 60.00167 * 19 17 15 21 21 H 1.48502 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47031 * 300.00255 * 19 17 15 23 23 C 1.46928 * 118.74356 * 53.60096 * 14 13 12 24 24 C 1.52993 * 109.46671 * 106.08388 * 3 2 1 25 25 C 1.53004 * 117.50267 * 11.38889 * 24 3 2 26 26 C 1.53008 * 117.50102 * 302.76356 * 24 3 2 27 27 H 1.09002 * 109.46343 * 302.63971 * 1 2 3 28 28 H 1.08992 * 109.47195 * 62.64371 * 1 2 3 29 29 H 1.09000 * 109.46556 * 182.64614 * 1 2 3 30 30 H 0.97001 * 120.00134 * 0.02562 * 7 5 3 31 31 H 1.08998 * 109.47222 * 60.00380 * 8 7 5 32 32 H 1.09001 * 109.47192 * 299.99867 * 8 7 5 33 33 H 1.09000 * 109.45926 * 298.70546 * 11 9 8 34 34 H 1.08999 * 109.45822 * 58.66050 * 11 9 8 35 35 H 1.09000 * 109.50052 * 301.41189 * 12 11 9 36 36 H 1.09001 * 109.52314 * 181.33565 * 12 11 9 37 37 H 1.08994 * 109.58982 * 185.57274 * 13 12 11 38 38 H 1.09004 * 109.69997 * 65.21986 * 13 12 11 39 39 H 0.96993 * 120.00417 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.59025 * 186.60897 * 23 14 13 41 41 H 1.08997 * 109.58509 * 66.18531 * 23 14 13 42 42 H 1.09000 * 115.54938 * 157.09881 * 24 3 2 43 43 H 1.08998 * 117.49791 * 359.97438 * 25 24 3 44 44 H 1.08997 * 117.49786 * 145.01893 * 25 24 3 45 45 H 1.09001 * 117.49854 * 214.98423 * 26 24 3 46 46 H 1.08999 * 117.49498 * 0.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2468 2.0431 -0.2472 5 6 3.1149 1.3636 -1.0235 6 8 3.4394 0.3606 -1.6231 7 7 3.7421 2.5303 -1.2725 8 6 4.8163 2.5866 -2.2670 9 6 5.3553 4.0158 -2.3551 10 1 4.5345 4.7019 -2.5642 11 6 6.3926 4.1023 -3.4770 12 6 6.9083 5.5389 -3.5876 13 6 7.5846 5.9372 -2.2720 14 7 6.6389 5.7188 -1.1690 15 6 6.3456 6.7281 -0.2912 16 1 5.3542 6.8064 0.1299 17 6 7.3227 7.6505 0.0573 18 7 8.5898 7.3908 -0.1863 19 14 6.8391 9.2603 0.8722 20 1 6.1403 8.9772 2.1515 21 1 8.0582 10.0643 1.1420 22 1 5.9345 10.0189 -0.0286 23 6 6.0140 4.3968 -1.0255 24 6 2.5827 1.6088 1.3860 25 6 2.6844 0.4482 2.3779 26 6 1.6256 1.5346 2.5774 27 1 -0.3632 0.5543 0.8654 28 1 -0.3633 0.4722 -0.9127 29 1 -0.3632 -1.0266 0.0474 30 1 3.4828 3.3324 -0.7926 31 1 4.4276 2.2839 -3.2393 32 1 5.6207 1.9129 -1.9715 33 1 7.2245 3.4340 -3.2547 34 1 5.9327 3.8079 -4.4203 35 1 6.0733 6.2111 -3.7854 36 1 7.6296 5.6054 -4.4021 37 1 7.8655 6.9897 -2.3095 38 1 8.4743 5.3269 -2.1167 39 1 9.2725 8.0351 0.0575 40 1 5.2585 4.4329 -0.2406 41 1 6.7745 3.6590 -0.7699 42 1 3.3655 2.3667 1.4158 43 1 2.3430 -0.5313 2.0431 44 1 3.5343 0.4424 3.0602 45 1 1.7790 2.2435 3.3911 46 1 0.5882 1.2694 2.3738 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352578720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:37 Heat of formation + Delta-G solvation = -64.459382 kcal Electronic energy + Delta-G solvation = -24746.947535 eV Core-core repulsion = 21250.947538 eV Total energy + Delta-G solvation = -3495.999997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25603 -39.66945 -38.87490 -36.85515 -36.17002 -34.66815 -32.32149 -32.14297 -30.01296 -27.39826 -27.17025 -26.14771 -23.83916 -23.23513 -22.77360 -22.25375 -21.27219 -20.56499 -18.80386 -18.40045 -17.83481 -17.31795 -16.79582 -16.51386 -16.26983 -15.77825 -15.73277 -15.31862 -15.18801 -14.97616 -14.52218 -14.35695 -14.00516 -13.98120 -13.74196 -13.59672 -12.98322 -12.85728 -12.82983 -12.50050 -12.35595 -12.32799 -12.30097 -12.00876 -11.82477 -11.70856 -11.55345 -11.32704 -11.24564 -11.07543 -10.89155 -10.53400 -10.33446 -10.09141 -8.59517 -7.86499 -5.38543 1.48020 1.50356 1.52477 1.56909 1.92706 2.51577 2.83102 3.01750 3.28835 3.57429 3.62158 3.73621 3.90356 3.99960 4.02053 4.06849 4.16887 4.21279 4.36189 4.40424 4.50879 4.57576 4.58225 4.61884 4.77075 4.78737 4.88261 4.88588 4.90562 5.01264 5.01366 5.11562 5.21144 5.23624 5.32014 5.34055 5.38406 5.46472 5.54547 5.67999 5.75693 6.03842 6.42136 6.54116 7.16659 7.20331 7.85796 8.42025 9.19251 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.003844 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.868855 B = 7281.806971 C = 8573.701203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.381 6.381 3 C 0.109 3.891 4 H 0.119 0.881 5 C 0.508 3.492 6 O -0.574 6.574 7 N -0.713 5.713 8 C 0.138 3.862 9 C -0.099 4.099 10 H 0.080 0.920 11 C -0.098 4.098 12 C -0.129 4.129 13 C 0.177 3.823 14 N -0.607 5.607 15 C -0.268 4.268 16 H 0.069 0.931 17 C -0.045 4.045 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.153 3.847 24 C -0.190 4.190 25 C -0.173 4.173 26 C -0.151 4.151 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.413 0.587 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.040 0.960 38 H -0.008 1.008 39 H 0.249 0.751 40 H 0.058 0.942 41 H 0.001 0.999 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.719 -9.889 0.001 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.299 6.299 3 C 0.048 3.952 4 H 0.137 0.863 5 C 0.295 3.705 6 O -0.452 6.452 7 N -0.366 5.366 8 C 0.014 3.986 9 C -0.119 4.119 10 H 0.098 0.902 11 C -0.136 4.136 12 C -0.168 4.168 13 C 0.051 3.949 14 N -0.331 5.331 15 C -0.399 4.399 16 H 0.086 0.914 17 C -0.241 4.241 18 N -0.579 5.579 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.224 1.224 22 H -0.202 1.202 23 C 0.028 3.972 24 C -0.209 4.209 25 C -0.210 4.210 26 C -0.188 4.188 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.249 0.751 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.010 0.990 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.019 0.981 42 H 0.134 0.866 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.127 0.873 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.243 -10.683 -0.380 19.444 hybrid contribution 0.385 1.443 0.682 1.642 sum -15.858 -9.240 0.303 18.356 Atomic orbital electron populations 1.23202 0.78947 1.04350 1.01278 1.88010 1.21671 1.25625 1.94598 1.21379 0.94319 0.87484 0.92027 0.86306 1.21081 0.83534 0.82828 0.83099 1.90672 1.66453 1.35927 1.52192 1.45961 1.36980 1.11347 1.42338 1.21272 0.88934 0.96519 0.91908 1.21717 0.98510 0.94591 0.97120 0.90154 1.21339 0.97834 0.96390 0.98026 1.21986 1.00289 0.96857 0.97658 1.20533 0.89982 0.98217 0.86126 1.44223 1.51041 1.08075 1.29712 1.19443 0.94445 1.05284 1.20679 0.91371 1.25958 0.94796 1.03437 0.99892 1.70186 0.99878 1.35679 1.52194 0.85387 0.76650 0.79849 0.78815 1.19775 1.22413 1.20167 1.21019 0.94786 0.86179 0.95231 1.22674 1.04723 1.03809 0.89693 1.22912 1.02000 0.94846 1.01204 1.23089 0.96060 1.01472 0.98132 0.91753 0.93180 0.88290 0.75073 0.90957 0.92898 0.92866 0.90089 0.92552 0.91242 0.94154 0.98952 0.94172 0.92358 0.98069 0.86637 0.88523 0.88766 0.87295 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.70 113.37 1.21 1.46 16 2 O -0.38 -8.80 8.24 -129.99 -1.07 -9.87 16 3 C 0.11 2.30 2.98 29.85 0.09 2.39 16 4 H 0.12 1.78 7.65 -2.39 -0.02 1.76 16 5 C 0.51 14.25 7.17 87.66 0.63 14.87 16 6 O -0.57 -21.33 16.51 15.98 0.26 -21.07 16 7 N -0.71 -17.85 5.23 -463.06 -2.42 -20.28 16 8 C 0.14 3.81 5.07 86.38 0.44 4.24 16 9 C -0.10 -3.01 2.38 -10.71 -0.03 -3.04 16 10 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 11 C -0.10 -2.96 5.17 30.62 0.16 -2.80 16 12 C -0.13 -4.58 6.08 30.67 0.19 -4.39 16 13 C 0.18 8.40 5.27 86.36 0.46 8.85 16 14 N -0.61 -29.51 2.96 -699.11 -2.07 -31.58 16 15 C -0.27 -14.24 9.51 84.03 0.80 -13.44 16 16 H 0.07 3.45 7.88 -2.91 -0.02 3.42 16 17 C -0.04 -2.44 4.89 84.86 0.41 -2.03 16 18 N -0.93 -55.14 11.60 21.65 0.25 -54.89 16 19 Si 0.97 43.61 29.58 68.60 2.03 45.64 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 C 0.15 6.01 5.60 86.36 0.48 6.49 16 24 C -0.19 -3.73 5.66 -10.79 -0.06 -3.79 16 25 C -0.17 -3.40 9.88 30.60 0.30 -3.10 16 26 C -0.15 -2.26 10.16 30.60 0.31 -1.95 16 27 H 0.06 0.63 6.36 -2.39 -0.02 0.62 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.41 8.76 7.70 -92.71 -0.71 8.05 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.04 2.16 6.50 -2.39 -0.02 2.14 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.06 2.14 7.13 -2.39 -0.02 2.12 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.12 2.36 8.06 -2.39 -0.02 2.34 16 43 H 0.10 2.09 7.10 -2.39 -0.02 2.08 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.11 1.28 6.32 -2.39 -0.02 1.27 16 Total: -1.00 -70.66 364.80 2.62 -68.04 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.24 Total: 20.21 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.39 Total: 3.79 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -4.24 Total: -106.74 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.81 Total: -30.93 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.66 2.62 -68.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352578720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.581 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds