Wall clock time and date at job start Tue Mar 31 2020 03:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99629 * 2 1 4 4 C 1.50707 * 112.85071 * 69.28694 * 3 2 1 5 5 O 1.21282 * 119.99888 * 202.33843 * 4 3 2 6 6 N 1.34773 * 119.99916 * 22.33716 * 4 3 2 7 7 C 1.46494 * 120.00004 * 174.69907 * 6 4 3 8 8 C 1.53008 * 109.47219 * 179.97438 * 7 6 4 9 9 H 1.08995 * 109.49305 * 55.00087 * 8 7 6 10 10 C 1.53041 * 109.49550 * 175.06586 * 8 7 6 11 11 C 1.53042 * 109.53665 * 181.28718 * 10 8 7 12 12 C 1.53195 * 109.33718 * 298.68087 * 11 10 8 13 13 N 1.46933 * 108.77360 * 54.62201 * 12 11 10 14 14 C 1.36937 * 120.62817 * 126.37164 * 13 12 11 15 15 H 1.07998 * 119.99806 * 327.39096 * 14 13 12 16 16 C 1.38811 * 119.99539 * 147.39561 * 14 13 12 17 17 N 1.31618 * 120.00491 * 349.85911 * 16 14 13 18 18 Si 1.86808 * 119.99504 * 169.85908 * 16 14 13 19 19 H 1.48498 * 109.47135 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46966 * 119.99952 * 18 16 14 21 21 H 1.48503 * 109.46862 * 239.99680 * 18 16 14 22 22 C 1.46922 * 118.73583 * 306.38648 * 13 12 11 23 23 C 1.53780 * 113.61817 * 298.09019 * 3 2 1 24 24 C 1.53780 * 87.08362 * 220.02192 * 23 3 2 25 25 C 1.53785 * 113.61315 * 200.59034 * 3 2 1 26 26 H 1.08997 * 109.47770 * 304.95075 * 1 2 3 27 27 H 1.08994 * 109.47290 * 64.95343 * 1 2 3 28 28 H 1.09001 * 109.46751 * 184.94975 * 1 2 3 29 29 H 0.97007 * 120.00158 * 354.69900 * 6 4 3 30 30 H 1.08999 * 109.47541 * 299.99906 * 7 6 4 31 31 H 1.09001 * 109.47439 * 60.00280 * 7 6 4 32 32 H 1.08997 * 109.45914 * 301.33392 * 10 8 7 33 33 H 1.08999 * 109.46131 * 61.29755 * 10 8 7 34 34 H 1.08997 * 109.49372 * 178.71701 * 11 10 8 35 35 H 1.08999 * 109.46974 * 58.63129 * 11 10 8 36 36 H 1.08999 * 109.58863 * 294.83589 * 12 11 10 37 37 H 1.08998 * 109.70265 * 174.47468 * 12 11 10 38 38 H 0.96998 * 120.00162 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.59513 * 293.82239 * 22 13 12 40 40 H 1.08999 * 109.70220 * 173.46482 * 22 13 12 41 41 H 1.08995 * 113.61916 * 105.46914 * 23 3 2 42 42 H 1.09000 * 113.68444 * 334.57641 * 23 3 2 43 43 H 1.08993 * 113.61702 * 139.97646 * 24 23 3 44 44 H 1.09000 * 113.61003 * 270.88487 * 24 23 3 45 45 H 1.09001 * 113.61447 * 25.43618 * 25 3 2 46 46 H 1.09007 * 113.61530 * 254.52927 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7994 2.0399 1.2990 5 8 1.8594 3.2509 1.3276 6 7 1.5441 1.3510 2.4289 7 6 1.4545 2.0540 3.7110 8 6 1.1582 1.0476 4.8248 9 1 1.9113 0.2599 4.8131 10 6 1.1861 1.7611 6.1785 11 6 0.9216 0.7493 7.2959 12 6 -0.4670 0.1317 7.1026 13 7 -0.5502 -0.4303 5.7476 14 6 -0.9210 -1.7343 5.5547 15 1 -0.6588 -2.4841 6.2864 16 6 -1.6338 -2.0923 4.4186 17 7 -2.1257 -1.1608 3.6295 18 14 -1.8948 -3.8963 4.0098 19 1 -1.2462 -4.7378 5.0473 20 1 -3.3500 -4.1898 3.9721 21 1 -1.2951 -4.1953 2.6845 22 6 -0.2277 0.4335 4.6036 23 6 1.6546 2.1382 -1.2430 24 6 3.1096 2.6357 -1.2291 25 6 3.4657 1.3318 -0.4956 26 1 -0.3634 0.5887 0.8423 27 1 -0.3633 0.4350 -0.9310 28 1 -0.3633 -1.0239 0.0887 29 1 1.4198 0.3896 2.3932 30 1 2.3996 2.5564 3.9168 31 1 0.6532 2.7916 3.6658 32 1 2.1637 2.2196 6.3272 33 1 0.4165 2.5327 6.1982 34 1 0.9642 1.2539 8.2610 35 1 1.6769 -0.0358 7.2614 36 1 -1.2295 0.9007 7.2267 37 1 -0.6228 -0.6592 7.8364 38 1 -2.6234 -1.4111 2.8354 39 1 -0.9706 1.2271 4.5239 40 1 -0.2237 -0.1567 3.6872 41 1 0.9230 2.9224 -1.0487 42 1 1.4074 1.5360 -2.1174 43 1 3.5539 2.7137 -2.2213 44 1 3.2591 3.5310 -0.6256 45 1 3.7140 0.5081 -1.1649 46 1 4.1963 1.4653 0.3024 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359670027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:20 Heat of formation + Delta-G solvation = -48.781391 kcal Electronic energy + Delta-G solvation = -25732.526545 eV Core-core repulsion = 22237.206397 eV Total energy + Delta-G solvation = -3495.320148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77296 -38.27687 -37.38993 -35.97235 -34.43971 -33.03911 -30.89096 -29.84310 -27.36705 -26.23989 -25.61173 -25.29517 -24.27576 -22.20704 -21.50404 -20.66317 -19.48043 -18.79129 -17.68342 -16.80537 -16.25591 -15.54231 -15.33868 -15.07940 -14.87630 -14.45114 -14.26490 -14.03274 -13.61491 -13.45589 -13.30424 -12.88963 -12.55131 -12.32684 -12.18925 -12.15067 -11.99223 -11.68212 -11.24160 -11.19310 -10.99586 -10.97366 -10.78714 -10.64700 -10.51990 -10.21924 -10.19857 -10.08370 -9.94176 -9.66253 -9.44910 -9.13127 -8.73245 -8.52918 -6.62985 -5.83065 -3.31849 2.68267 3.32341 3.32566 3.41073 3.42774 3.69241 4.41645 4.44334 4.57782 4.74600 4.78053 5.16275 5.26924 5.32153 5.50670 5.53894 5.56121 5.57267 5.59015 5.60288 5.67695 5.78856 5.79516 5.87396 5.92868 5.95630 6.05076 6.09661 6.25232 6.27871 6.28887 6.40855 6.48858 6.64540 6.72241 6.81148 6.84699 7.00222 7.06993 7.29996 7.59757 7.75471 7.81211 8.40496 8.43704 9.18383 9.79315 10.39115 11.24522 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.005520 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.430419 B = 5071.471479 C = 6648.500538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.366 6.366 3 C 0.064 3.936 4 C 0.513 3.487 5 O -0.543 6.543 6 N -0.709 5.709 7 C 0.129 3.871 8 C -0.129 4.129 9 H 0.069 0.931 10 C -0.100 4.100 11 C -0.133 4.133 12 C 0.143 3.857 13 N -0.592 5.592 14 C -0.252 4.252 15 H 0.064 0.936 16 C 0.007 3.993 17 N -0.902 5.902 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.181 3.819 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.108 4.108 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.094 0.906 29 H 0.411 0.589 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.052 0.948 38 H 0.252 0.748 39 H 0.018 0.982 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.834 5.392 -6.331 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.285 6.285 3 C 0.021 3.979 4 C 0.298 3.702 5 O -0.421 6.421 6 N -0.360 5.360 7 C 0.005 3.995 8 C -0.149 4.149 9 H 0.088 0.912 10 C -0.138 4.138 11 C -0.172 4.172 12 C 0.017 3.983 13 N -0.314 5.314 14 C -0.382 4.382 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.547 5.547 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.055 3.945 23 C -0.181 4.181 24 C -0.173 4.173 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.248 0.752 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.872 6.027 -6.411 12.496 hybrid contribution -0.588 -1.229 -0.190 1.376 sum 8.284 4.798 -6.601 11.629 Atomic orbital electron populations 1.22881 0.79826 1.03891 1.00615 1.87954 1.20696 1.25133 1.94707 1.23238 0.97626 0.84395 0.92652 1.20419 0.76790 0.87700 0.85337 1.90659 1.51691 1.13468 1.86287 1.46080 1.70440 1.12573 1.06915 1.21433 1.00841 0.95236 0.82009 1.22164 1.02885 0.96932 0.92968 0.91244 1.21330 1.00102 0.97735 0.94621 1.21991 1.00304 0.98253 0.96667 1.20942 0.92788 0.95975 0.88594 1.43980 1.78384 1.09408 0.99676 1.19219 1.28324 0.84015 1.06664 0.91871 1.25169 0.97018 0.97348 0.99647 1.69994 1.38126 1.30885 1.15674 0.86251 0.77557 0.85067 0.78095 1.20250 1.21657 1.21468 1.20778 0.88219 0.92891 0.92598 1.23347 0.98658 0.99519 0.96625 1.22763 0.95698 0.97823 1.01042 1.22948 0.92419 0.98919 1.00260 0.92763 0.93995 0.88784 0.75238 0.92389 0.91676 0.93454 0.92506 0.93089 0.92457 0.96534 0.92905 0.93749 0.96416 0.89527 0.90324 0.88766 0.90735 0.88680 0.88213 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.34 101.05 1.05 1.40 16 2 O -0.37 -5.54 9.84 -35.23 -0.35 -5.88 16 3 C 0.06 0.91 1.31 -90.95 -0.12 0.79 16 4 C 0.51 8.55 6.35 -10.98 -0.07 8.48 16 5 O -0.54 -10.17 15.23 5.56 0.08 -10.08 16 6 N -0.71 -11.97 4.81 -60.29 -0.29 -12.26 16 7 C 0.13 2.17 5.07 -4.04 -0.02 2.15 16 8 C -0.13 -2.34 2.37 -90.50 -0.21 -2.55 16 9 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 10 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 11 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 12 C 0.14 2.97 6.52 -3.71 -0.02 2.94 16 13 N -0.59 -14.41 2.98 -172.32 -0.51 -14.93 16 14 C -0.25 -6.72 9.57 -15.06 -0.14 -6.87 16 15 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 16 C 0.01 0.18 5.05 -17.43 -0.09 0.09 16 17 N -0.90 -24.78 11.12 55.49 0.62 -24.16 16 18 Si 0.90 21.00 29.57 -169.99 -5.03 15.97 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.18 4.10 4.33 -3.71 -0.02 4.08 16 23 C -0.14 -1.75 6.30 -25.92 -0.16 -1.92 16 24 C -0.14 -1.50 7.67 -25.92 -0.20 -1.70 16 25 C -0.11 -1.26 7.49 -25.91 -0.19 -1.45 16 26 H 0.05 0.90 7.08 -51.93 -0.37 0.53 16 27 H 0.04 0.53 7.60 -51.93 -0.39 0.14 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.41 7.15 6.68 -40.82 -0.27 6.87 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 38 H 0.25 6.69 8.31 -40.82 -0.34 6.36 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 2.13 5.39 -51.93 -0.28 1.85 16 41 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.18 7.25 -51.93 -0.38 0.81 16 45 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -29.17 358.43 -8.56 -37.73 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.98 Total: 6.96 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.51 Total: 1.25 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.19 Total: -51.34 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.26 Total: -15.97 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.17 -8.56 -37.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359670027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.054 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds