Wall clock time and date at job start Tue Mar 31 2020 03:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99629 * 2 1 4 4 C 1.50707 * 112.85071 * 69.28694 * 3 2 1 5 5 O 1.21282 * 119.99888 * 202.33843 * 4 3 2 6 6 N 1.34773 * 119.99916 * 22.33716 * 4 3 2 7 7 C 1.46494 * 120.00004 * 174.69907 * 6 4 3 8 8 C 1.53008 * 109.47219 * 179.97438 * 7 6 4 9 9 H 1.08995 * 109.49305 * 55.00087 * 8 7 6 10 10 C 1.53041 * 109.49550 * 175.06586 * 8 7 6 11 11 C 1.53042 * 109.53665 * 181.28718 * 10 8 7 12 12 C 1.53195 * 109.33718 * 298.68087 * 11 10 8 13 13 N 1.46933 * 108.77360 * 54.62201 * 12 11 10 14 14 C 1.36937 * 120.62817 * 126.37164 * 13 12 11 15 15 H 1.07998 * 119.99806 * 327.39096 * 14 13 12 16 16 C 1.38811 * 119.99539 * 147.39561 * 14 13 12 17 17 N 1.31618 * 120.00491 * 349.85911 * 16 14 13 18 18 Si 1.86808 * 119.99504 * 169.85908 * 16 14 13 19 19 H 1.48498 * 109.47135 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46966 * 119.99952 * 18 16 14 21 21 H 1.48503 * 109.46862 * 239.99680 * 18 16 14 22 22 C 1.46922 * 118.73583 * 306.38648 * 13 12 11 23 23 C 1.53780 * 113.61817 * 298.09019 * 3 2 1 24 24 C 1.53780 * 87.08362 * 220.02192 * 23 3 2 25 25 C 1.53785 * 113.61315 * 200.59034 * 3 2 1 26 26 H 1.08997 * 109.47770 * 304.95075 * 1 2 3 27 27 H 1.08994 * 109.47290 * 64.95343 * 1 2 3 28 28 H 1.09001 * 109.46751 * 184.94975 * 1 2 3 29 29 H 0.97007 * 120.00158 * 354.69900 * 6 4 3 30 30 H 1.08999 * 109.47541 * 299.99906 * 7 6 4 31 31 H 1.09001 * 109.47439 * 60.00280 * 7 6 4 32 32 H 1.08997 * 109.45914 * 301.33392 * 10 8 7 33 33 H 1.08999 * 109.46131 * 61.29755 * 10 8 7 34 34 H 1.08997 * 109.49372 * 178.71701 * 11 10 8 35 35 H 1.08999 * 109.46974 * 58.63129 * 11 10 8 36 36 H 1.08999 * 109.58863 * 294.83589 * 12 11 10 37 37 H 1.08998 * 109.70265 * 174.47468 * 12 11 10 38 38 H 0.96998 * 120.00162 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.59513 * 293.82239 * 22 13 12 40 40 H 1.08999 * 109.70220 * 173.46482 * 22 13 12 41 41 H 1.08995 * 113.61916 * 105.46914 * 23 3 2 42 42 H 1.09000 * 113.68444 * 334.57641 * 23 3 2 43 43 H 1.08993 * 113.61702 * 139.97646 * 24 23 3 44 44 H 1.09000 * 113.61003 * 270.88487 * 24 23 3 45 45 H 1.09001 * 113.61447 * 25.43618 * 25 3 2 46 46 H 1.09007 * 113.61530 * 254.52927 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7994 2.0399 1.2990 5 8 1.8594 3.2509 1.3276 6 7 1.5441 1.3510 2.4289 7 6 1.4545 2.0540 3.7110 8 6 1.1582 1.0476 4.8248 9 1 1.9113 0.2599 4.8131 10 6 1.1861 1.7611 6.1785 11 6 0.9216 0.7493 7.2959 12 6 -0.4670 0.1317 7.1026 13 7 -0.5502 -0.4303 5.7476 14 6 -0.9210 -1.7343 5.5547 15 1 -0.6588 -2.4841 6.2864 16 6 -1.6338 -2.0923 4.4186 17 7 -2.1257 -1.1608 3.6295 18 14 -1.8948 -3.8963 4.0098 19 1 -1.2462 -4.7378 5.0473 20 1 -3.3500 -4.1898 3.9721 21 1 -1.2951 -4.1953 2.6845 22 6 -0.2277 0.4335 4.6036 23 6 1.6546 2.1382 -1.2430 24 6 3.1096 2.6357 -1.2291 25 6 3.4657 1.3318 -0.4956 26 1 -0.3634 0.5887 0.8423 27 1 -0.3633 0.4350 -0.9310 28 1 -0.3633 -1.0239 0.0887 29 1 1.4198 0.3896 2.3932 30 1 2.3996 2.5564 3.9168 31 1 0.6532 2.7916 3.6658 32 1 2.1637 2.2196 6.3272 33 1 0.4165 2.5327 6.1982 34 1 0.9642 1.2539 8.2610 35 1 1.6769 -0.0358 7.2614 36 1 -1.2295 0.9007 7.2267 37 1 -0.6228 -0.6592 7.8364 38 1 -2.6234 -1.4111 2.8354 39 1 -0.9706 1.2271 4.5239 40 1 -0.2237 -0.1567 3.6872 41 1 0.9230 2.9224 -1.0487 42 1 1.4074 1.5360 -2.1174 43 1 3.5539 2.7137 -2.2213 44 1 3.2591 3.5310 -0.6256 45 1 3.7140 0.5081 -1.1649 46 1 4.1963 1.4653 0.3024 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359670027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:20 Heat of formation + Delta-G solvation = -66.586731 kcal Electronic energy + Delta-G solvation = -25733.298643 eV Core-core repulsion = 22237.206397 eV Total energy + Delta-G solvation = -3496.092246 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95711 -39.73059 -38.79336 -37.12635 -35.92668 -34.77528 -32.54781 -31.56312 -28.53799 -27.61137 -27.16158 -26.61932 -25.50508 -23.88271 -22.82987 -22.07264 -20.95044 -20.13992 -18.87638 -18.69320 -17.44836 -16.97325 -16.79112 -16.49982 -16.09399 -15.92055 -15.59760 -15.50956 -15.22088 -14.98442 -14.53638 -14.52676 -14.03753 -13.78923 -13.73670 -13.32771 -13.11804 -12.93632 -12.85296 -12.72117 -12.58438 -12.27035 -12.22038 -12.01518 -11.97163 -11.82439 -11.70067 -11.56628 -11.29957 -11.16478 -11.10182 -10.56501 -10.36818 -10.11657 -8.58777 -7.84905 -5.37513 1.38642 1.45867 1.48659 1.57671 2.06229 2.50718 2.57232 3.29086 3.42954 3.52424 3.59063 3.62413 3.79276 3.97665 4.05362 4.13120 4.28945 4.33473 4.37855 4.40235 4.51404 4.60050 4.67505 4.74513 4.77985 4.81497 4.84675 4.86845 4.90292 4.97530 5.01875 5.02458 5.13904 5.21510 5.30980 5.35743 5.37833 5.45691 5.55406 5.67296 5.77106 5.90115 6.43564 6.45702 7.06085 7.18051 7.86168 8.40855 9.19977 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.005520 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.430419 B = 5071.471479 C = 6648.500538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.050 3.950 4 C 0.510 3.490 5 O -0.567 6.567 6 N -0.712 5.712 7 C 0.136 3.864 8 C -0.113 4.113 9 H 0.067 0.933 10 C -0.098 4.098 11 C -0.122 4.122 12 C 0.136 3.864 13 N -0.611 5.611 14 C -0.267 4.267 15 H 0.061 0.939 16 C -0.038 4.038 17 N -0.927 5.927 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.294 1.294 21 H -0.285 1.285 22 C 0.193 3.807 23 C -0.140 4.140 24 C -0.126 4.126 25 C -0.100 4.100 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.408 0.592 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.009 0.991 37 H 0.051 0.949 38 H 0.250 0.750 39 H -0.015 1.015 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.120 0.880 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.647 5.271 -6.764 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.007 3.993 4 C 0.296 3.704 5 O -0.447 6.447 6 N -0.362 5.362 7 C 0.012 3.988 8 C -0.134 4.134 9 H 0.086 0.914 10 C -0.136 4.136 11 C -0.161 4.161 12 C 0.011 3.989 13 N -0.334 5.334 14 C -0.397 4.397 15 H 0.079 0.921 16 C -0.235 4.235 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.195 1.195 20 H -0.221 1.221 21 H -0.212 1.212 22 C 0.067 3.933 23 C -0.178 4.178 24 C -0.164 4.164 25 C -0.138 4.138 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.244 0.756 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.003 0.997 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.138 0.862 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.702 5.914 -6.820 14.001 hybrid contribution -1.210 -1.171 -0.004 1.684 sum 9.492 4.743 -6.824 12.616 Atomic orbital electron populations 1.22816 0.80047 1.03368 1.00580 1.87946 1.20549 1.25867 1.94666 1.23490 0.99769 0.84086 0.91942 1.20940 0.75884 0.87572 0.86049 1.90639 1.52830 1.14473 1.86747 1.46146 1.70453 1.12382 1.07256 1.21341 1.01123 0.94549 0.81806 1.21930 0.99519 0.97112 0.94794 0.91426 1.21355 1.01913 0.97382 0.92958 1.21873 0.97326 0.98340 0.98513 1.21119 0.95153 0.95846 0.86811 1.44259 1.78740 1.09102 1.01347 1.19480 1.28256 0.85244 1.06759 0.92114 1.25828 0.97106 1.00852 0.99679 1.70140 1.38758 1.32465 1.15885 0.85311 0.76947 0.80927 0.77894 1.19476 1.22086 1.21185 1.20526 0.89976 0.91398 0.91427 1.23406 0.99239 0.98980 0.96141 1.22700 0.94712 0.96689 1.02260 1.23032 0.90361 0.99925 1.00469 0.95458 0.91786 0.89099 0.75627 0.90553 0.93120 0.90119 0.92708 0.89792 0.92524 0.97284 0.93029 0.94059 0.99667 0.92031 0.91831 0.86652 0.87688 0.90382 0.86184 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.34 113.37 1.17 2.01 16 2 O -0.37 -11.01 9.84 -148.98 -1.47 -12.47 16 3 C 0.05 1.37 1.31 -11.01 -0.01 1.36 16 4 C 0.51 17.05 6.35 87.66 0.56 17.61 16 5 O -0.57 -21.35 15.23 -3.03 -0.05 -21.39 16 6 N -0.71 -24.41 4.81 -463.06 -2.23 -26.64 16 7 C 0.14 4.57 5.07 86.38 0.44 5.01 16 8 C -0.11 -4.07 2.37 -10.71 -0.03 -4.09 16 9 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 10 C -0.10 -3.03 5.17 30.62 0.16 -2.87 16 11 C -0.12 -3.88 6.08 30.67 0.19 -3.70 16 12 C 0.14 5.60 6.52 86.36 0.56 6.16 16 13 N -0.61 -30.27 2.98 -699.09 -2.08 -32.35 16 14 C -0.27 -14.45 9.57 84.03 0.80 -13.65 16 15 H 0.06 3.25 7.85 -2.91 -0.02 3.22 16 16 C -0.04 -2.08 5.05 84.86 0.43 -1.65 16 17 N -0.93 -52.49 11.12 21.65 0.24 -52.25 16 18 Si 0.96 43.67 29.57 68.60 2.03 45.70 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 22 C 0.19 8.99 4.33 86.36 0.37 9.36 16 23 C -0.14 -3.19 6.30 31.12 0.20 -3.00 16 24 C -0.13 -2.50 7.67 31.12 0.24 -2.26 16 25 C -0.10 -2.12 7.49 31.12 0.23 -1.89 16 26 H 0.03 0.94 7.08 -2.39 -0.02 0.93 16 27 H 0.06 1.58 7.60 -2.39 -0.02 1.57 16 28 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.41 14.59 6.68 -92.70 -0.62 13.97 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 38 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.06 3.17 5.39 -2.39 -0.01 3.15 16 41 H 0.06 1.64 7.90 -2.39 -0.02 1.63 16 42 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.84 7.25 -2.39 -0.02 1.83 16 45 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.07 1.61 8.10 -2.38 -0.02 1.59 16 Total: -1.00 -63.99 358.43 2.09 -61.90 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.33 Total: 29.11 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.31 Total: 8.40 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -4.07 Total: -111.24 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.51 Total: -33.87 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -63.99 2.09 -61.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359670027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.682 kcal (2) G-P(sol) polarization free energy of solvation -63.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds