Wall clock time and date at job start Tue Mar 31 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46908 * 109.46919 * 2 1 4 4 C 1.47020 * 110.99487 * 293.95208 * 3 2 1 5 5 C 1.53094 * 109.25404 * 177.60893 * 4 3 2 6 6 O 1.43014 * 109.29800 * 56.82903 * 5 4 3 7 7 C 1.43020 * 113.73202 * 301.39895 * 6 5 4 8 8 H 1.08998 * 109.47596 * 298.65861 * 7 6 5 9 9 C 1.50707 * 109.54144 * 178.57869 * 7 6 5 10 10 O 1.21281 * 119.99984 * 347.07924 * 9 7 6 11 11 N 1.34774 * 120.00368 * 167.08416 * 9 7 6 12 12 C 1.46499 * 119.99534 * 4.25684 * 11 9 7 13 13 C 1.50703 * 109.46810 * 95.92794 * 12 11 9 14 14 H 1.07995 * 120.00165 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99751 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00279 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99769 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47360 * 89.99691 * 17 15 13 19 19 H 1.48503 * 109.46963 * 209.99708 * 17 15 13 20 20 H 1.48499 * 109.47329 * 329.99834 * 17 15 13 21 21 C 1.46493 * 120.00241 * 184.26188 * 11 9 7 22 22 C 1.53005 * 109.47005 * 94.11084 * 21 11 9 23 23 C 1.53003 * 117.50101 * 243.72937 * 22 21 11 24 24 C 1.53002 * 117.49689 * 175.07105 * 22 21 11 25 25 C 1.47014 * 110.99714 * 170.31859 * 3 2 1 26 26 H 1.09001 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47188 * 299.99659 * 1 2 3 28 28 H 1.08993 * 109.47247 * 60.00121 * 1 2 3 29 29 H 1.08994 * 109.47299 * 239.99678 * 2 1 3 30 30 H 1.08999 * 109.47136 * 119.99179 * 2 1 3 31 31 H 1.08992 * 109.50604 * 57.67437 * 4 3 2 32 32 H 1.08996 * 109.50709 * 297.54400 * 4 3 2 33 33 H 1.09005 * 109.50703 * 176.78481 * 5 4 3 34 34 H 1.08998 * 109.50953 * 296.87114 * 5 4 3 35 35 H 1.09007 * 109.47285 * 215.92015 * 12 11 9 36 36 H 1.08997 * 109.47614 * 335.92794 * 12 11 9 37 37 H 0.97001 * 120.00295 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47521 * 214.10915 * 21 11 9 39 39 H 1.08997 * 109.47402 * 334.11173 * 21 11 9 40 40 H 1.09001 * 115.55345 * 29.40636 * 22 21 11 41 41 H 1.09003 * 117.49360 * 0.02562 * 23 22 21 42 42 H 1.09001 * 117.49895 * 145.01726 * 23 22 21 43 43 H 1.09004 * 117.49905 * 214.98179 * 24 22 21 44 44 H 1.09001 * 117.50035 * 359.97438 * 24 22 21 45 45 H 1.08990 * 109.51011 * 302.32017 * 25 3 2 46 46 H 1.08998 * 109.50746 * 62.41538 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6698 2.0674 -1.2544 5 6 2.1451 3.5212 -1.1878 6 8 3.5519 3.5472 -0.9315 7 6 3.9280 2.8911 0.2824 8 1 3.4547 3.3910 1.1275 9 6 5.4257 2.9441 0.4409 10 8 6.1233 3.2733 -0.4950 11 7 5.9900 2.6256 1.6227 12 6 5.1566 2.1384 2.7246 13 6 5.1758 0.6316 2.7407 14 1 5.7508 0.0910 2.0036 15 6 4.4591 -0.0567 3.6965 16 7 3.7592 0.6016 4.5945 17 14 4.4822 -1.9245 3.7160 18 1 5.6005 -2.3968 4.5713 19 1 3.1959 -2.4298 4.2594 20 1 4.6686 -2.4317 2.3328 21 6 7.4367 2.7666 1.8053 22 6 7.7422 4.1337 2.4208 23 6 8.5637 5.1172 1.5850 24 6 9.1950 4.4297 2.7982 25 6 3.4708 1.4308 0.2308 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.5889 2.0438 -1.3923 32 1 2.1551 1.5637 -2.0903 33 1 1.9390 4.0154 -2.1373 34 1 1.6194 4.0397 -0.3860 35 1 5.5464 2.5168 3.6697 36 1 4.1331 2.4874 2.5879 37 1 3.2547 0.1173 5.2667 38 1 7.7976 1.9807 2.4687 39 1 7.9347 2.6837 0.8393 40 1 6.9620 4.5462 3.0606 41 1 8.8863 4.7904 0.5964 42 1 8.3242 6.1768 1.6750 43 1 9.3706 5.0373 3.6860 44 1 9.9332 3.6505 2.6084 45 1 3.7045 0.9426 1.1769 46 1 3.9849 0.9163 -0.5810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363343228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:11 Heat of formation + Delta-G solvation = -46.574626 kcal Electronic energy + Delta-G solvation = -25841.514801 eV Core-core repulsion = 22346.290345 eV Total energy + Delta-G solvation = -3495.224456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -39.93124 -38.43395 -36.83403 -35.73667 -34.76260 -32.55784 -31.24953 -30.61169 -27.97322 -27.12850 -25.57302 -23.83977 -23.03208 -22.15421 -22.02304 -20.44284 -19.98497 -18.57453 -16.75699 -16.61415 -16.20855 -15.71869 -15.43317 -15.02189 -14.86318 -14.54117 -14.35152 -14.07956 -13.94593 -13.58489 -13.25202 -13.02420 -12.50039 -12.33858 -12.06065 -11.77713 -11.68079 -11.55379 -11.44684 -11.23963 -11.12362 -11.00685 -10.95152 -10.73948 -10.58796 -10.31897 -10.26601 -10.12014 -9.77808 -9.55967 -9.24846 -8.93933 -8.58827 -8.04133 -7.76087 -6.25477 -4.32477 3.16507 3.24478 3.25365 3.29710 3.48740 4.11292 4.14269 4.24728 4.54290 5.06303 5.10136 5.12794 5.18456 5.24589 5.30496 5.33790 5.39896 5.47146 5.51535 5.62382 5.63942 5.72204 5.81816 5.87122 5.89844 5.93539 6.05718 6.14368 6.16519 6.23132 6.25420 6.27714 6.38489 6.40289 6.59923 6.68424 6.79319 7.12034 7.29819 7.33475 7.42208 7.58823 7.68841 7.97349 8.29143 8.71982 8.98462 9.33663 10.80340 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.007217 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.561682 B = 3878.605059 C = 6056.996453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.530 5.530 4 C 0.012 3.988 5 C 0.065 3.935 6 O -0.366 6.366 7 C 0.087 3.913 8 H 0.089 0.911 9 C 0.526 3.474 10 O -0.552 6.552 11 N -0.590 5.590 12 C 0.231 3.769 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.071 3.929 16 N -0.880 5.880 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.151 3.849 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.179 4.179 25 C 0.013 3.987 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.267 0.733 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.146 0.854 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 2.986 -5.450 6.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.255 5.255 4 C -0.117 4.117 5 C -0.012 4.012 6 O -0.284 6.284 7 C 0.026 3.974 8 H 0.106 0.894 9 C 0.312 3.688 10 O -0.430 6.430 11 N -0.321 5.321 12 C 0.111 3.889 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.517 5.517 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.027 3.973 22 C -0.179 4.179 23 C -0.214 4.214 24 C -0.217 4.217 25 C -0.114 4.114 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.164 0.836 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.997 3.459 -5.499 6.796 hybrid contribution 0.026 -1.628 -0.259 1.648 sum -1.972 1.831 -5.758 6.356 Atomic orbital electron populations 1.21784 0.95162 1.01225 1.02186 1.22056 0.95642 0.88682 1.01212 1.62226 1.14193 1.16100 1.32961 1.22852 1.01195 0.96019 0.91600 1.22633 0.82109 0.95148 1.01325 1.88033 1.22579 1.76840 1.40988 1.21898 0.93295 0.94013 0.88206 0.89377 1.19894 0.88930 0.77232 0.82751 1.90600 1.63851 1.48909 1.39675 1.48060 1.07677 1.63105 1.13297 1.19579 0.90413 0.94498 0.84398 1.21415 1.30520 0.91183 1.14828 0.91929 1.24913 0.94895 0.98563 0.94982 1.69912 1.29652 1.35863 1.16316 0.86621 0.77728 0.85363 0.78600 1.20409 1.20895 1.19712 1.20842 0.81654 0.94188 1.00578 1.22786 0.94248 0.97904 1.02989 1.22987 1.04667 0.97924 0.95857 1.22905 0.96076 1.03570 0.99121 1.23221 0.86391 0.95766 1.06015 0.92567 0.91650 0.93108 0.95319 0.89904 0.89853 0.94429 0.88711 0.92416 0.94489 0.93843 0.92357 0.89820 0.90608 0.87757 0.88772 0.89481 0.89154 0.88930 0.83639 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.84 37.16 0.37 -1.48 16 2 C 0.05 0.81 5.68 -3.82 -0.02 0.79 16 3 N -0.53 -9.11 4.73 -234.31 -1.11 -10.22 16 4 C 0.01 0.17 5.43 -3.71 -0.02 0.15 16 5 C 0.07 0.98 7.01 37.21 0.26 1.24 16 6 O -0.37 -7.19 10.04 -54.75 -0.55 -7.74 16 7 C 0.09 1.76 2.37 -27.83 -0.07 1.69 16 8 H 0.09 1.78 6.87 -51.93 -0.36 1.43 16 9 C 0.53 11.57 7.02 -10.98 -0.08 11.49 16 10 O -0.55 -13.37 16.05 -13.96 -0.22 -13.60 16 11 N -0.59 -12.39 2.46 -175.06 -0.43 -12.82 16 12 C 0.23 5.25 4.69 -5.19 -0.02 5.22 16 13 C -0.54 -13.17 6.90 -34.44 -0.24 -13.41 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -22.98 13.29 55.43 0.74 -22.24 16 17 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.15 2.82 5.78 -4.04 -0.02 2.79 16 22 C -0.16 -2.63 6.01 -90.61 -0.54 -3.18 16 23 C -0.18 -2.61 10.18 -26.69 -0.27 -2.89 16 24 C -0.18 -2.42 10.25 -26.69 -0.27 -2.69 16 25 C 0.01 0.27 4.66 -3.71 -0.02 0.25 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.57 6.51 -51.93 -0.34 0.24 16 29 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.08 1.42 8.04 -51.93 -0.42 1.01 16 31 H 0.08 1.02 6.37 -51.93 -0.33 0.69 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.89 8.12 -51.93 -0.42 0.46 16 36 H 0.04 1.03 5.54 -51.93 -0.29 0.74 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 39 H 0.08 1.45 6.99 -51.93 -0.36 1.08 16 40 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 41 H 0.09 1.43 8.03 -51.93 -0.42 1.02 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.15 3.23 4.21 -51.93 -0.22 3.01 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -28.08 363.15 -9.94 -38.02 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.77 Total: 6.93 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.05 Total: 1.65 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.80 Total: -45.29 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.77 Total: -21.34 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.08 -9.94 -38.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363343228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.558 kcal (2) G-P(sol) polarization free energy of solvation -28.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds