Wall clock time and date at job start Tue Mar 31 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46908 * 109.46919 * 2 1 4 4 C 1.47020 * 110.99487 * 293.95208 * 3 2 1 5 5 C 1.53094 * 109.25404 * 177.60893 * 4 3 2 6 6 O 1.43014 * 109.29800 * 56.82903 * 5 4 3 7 7 C 1.43020 * 113.73202 * 301.39895 * 6 5 4 8 8 H 1.08998 * 109.47596 * 298.65861 * 7 6 5 9 9 C 1.50707 * 109.54144 * 178.57869 * 7 6 5 10 10 O 1.21281 * 119.99984 * 347.07924 * 9 7 6 11 11 N 1.34774 * 120.00368 * 167.08416 * 9 7 6 12 12 C 1.46499 * 119.99534 * 4.25684 * 11 9 7 13 13 C 1.50703 * 109.46810 * 95.92794 * 12 11 9 14 14 H 1.07995 * 120.00165 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99751 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00279 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99769 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47360 * 89.99691 * 17 15 13 19 19 H 1.48503 * 109.46963 * 209.99708 * 17 15 13 20 20 H 1.48499 * 109.47329 * 329.99834 * 17 15 13 21 21 C 1.46493 * 120.00241 * 184.26188 * 11 9 7 22 22 C 1.53005 * 109.47005 * 94.11084 * 21 11 9 23 23 C 1.53003 * 117.50101 * 243.72937 * 22 21 11 24 24 C 1.53002 * 117.49689 * 175.07105 * 22 21 11 25 25 C 1.47014 * 110.99714 * 170.31859 * 3 2 1 26 26 H 1.09001 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47188 * 299.99659 * 1 2 3 28 28 H 1.08993 * 109.47247 * 60.00121 * 1 2 3 29 29 H 1.08994 * 109.47299 * 239.99678 * 2 1 3 30 30 H 1.08999 * 109.47136 * 119.99179 * 2 1 3 31 31 H 1.08992 * 109.50604 * 57.67437 * 4 3 2 32 32 H 1.08996 * 109.50709 * 297.54400 * 4 3 2 33 33 H 1.09005 * 109.50703 * 176.78481 * 5 4 3 34 34 H 1.08998 * 109.50953 * 296.87114 * 5 4 3 35 35 H 1.09007 * 109.47285 * 215.92015 * 12 11 9 36 36 H 1.08997 * 109.47614 * 335.92794 * 12 11 9 37 37 H 0.97001 * 120.00295 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47521 * 214.10915 * 21 11 9 39 39 H 1.08997 * 109.47402 * 334.11173 * 21 11 9 40 40 H 1.09001 * 115.55345 * 29.40636 * 22 21 11 41 41 H 1.09003 * 117.49360 * 0.02562 * 23 22 21 42 42 H 1.09001 * 117.49895 * 145.01726 * 23 22 21 43 43 H 1.09004 * 117.49905 * 214.98179 * 24 22 21 44 44 H 1.09001 * 117.50035 * 359.97438 * 24 22 21 45 45 H 1.08990 * 109.51011 * 302.32017 * 25 3 2 46 46 H 1.08998 * 109.50746 * 62.41538 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6698 2.0674 -1.2544 5 6 2.1451 3.5212 -1.1878 6 8 3.5519 3.5472 -0.9315 7 6 3.9280 2.8911 0.2824 8 1 3.4547 3.3910 1.1275 9 6 5.4257 2.9441 0.4409 10 8 6.1233 3.2733 -0.4950 11 7 5.9900 2.6256 1.6227 12 6 5.1566 2.1384 2.7246 13 6 5.1758 0.6316 2.7407 14 1 5.7508 0.0910 2.0036 15 6 4.4591 -0.0567 3.6965 16 7 3.7592 0.6016 4.5945 17 14 4.4822 -1.9245 3.7160 18 1 5.6005 -2.3968 4.5713 19 1 3.1959 -2.4298 4.2594 20 1 4.6686 -2.4317 2.3328 21 6 7.4367 2.7666 1.8053 22 6 7.7422 4.1337 2.4208 23 6 8.5637 5.1172 1.5850 24 6 9.1950 4.4297 2.7982 25 6 3.4708 1.4308 0.2308 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.5889 2.0438 -1.3923 32 1 2.1551 1.5637 -2.0903 33 1 1.9390 4.0154 -2.1373 34 1 1.6194 4.0397 -0.3860 35 1 5.5464 2.5168 3.6697 36 1 4.1331 2.4874 2.5879 37 1 3.2547 0.1173 5.2667 38 1 7.7976 1.9807 2.4687 39 1 7.9347 2.6837 0.8393 40 1 6.9620 4.5462 3.0606 41 1 8.8863 4.7904 0.5964 42 1 8.3242 6.1768 1.6750 43 1 9.3706 5.0373 3.6860 44 1 9.9332 3.6505 2.6084 45 1 3.7045 0.9426 1.1769 46 1 3.9849 0.9163 -0.5810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363343228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:08 Heat of formation + Delta-G solvation = -62.604378 kcal Electronic energy + Delta-G solvation = -25842.209903 eV Core-core repulsion = 22346.290345 eV Total energy + Delta-G solvation = -3495.919558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.52304 -39.93131 -38.21165 -37.12821 -36.50499 -34.45253 -32.70894 -31.80678 -29.65824 -28.74448 -27.02986 -25.25830 -24.89641 -23.42184 -23.18514 -21.78195 -21.35529 -20.23925 -18.53905 -18.34110 -17.84276 -17.15323 -16.84435 -16.57451 -16.25014 -16.20578 -15.73801 -15.47482 -15.36110 -14.98196 -14.68266 -14.47335 -14.25465 -13.86439 -13.68106 -13.32183 -13.02648 -12.85765 -12.80026 -12.72298 -12.60278 -12.52959 -12.36371 -12.33756 -12.05706 -11.76588 -11.75094 -11.68637 -11.32135 -10.85357 -10.74481 -10.68513 -10.47037 -9.52585 -9.40951 -8.19660 -6.31861 1.39798 1.43198 1.50268 1.56255 1.90647 2.39769 2.77229 2.87743 3.05751 3.13917 3.70663 3.80234 3.84789 3.92139 3.99536 4.01488 4.05773 4.14549 4.28474 4.32437 4.40468 4.49173 4.58550 4.60798 4.67702 4.72596 4.77243 4.81773 4.86228 4.92518 4.96206 5.01407 5.06853 5.10865 5.22900 5.26414 5.29016 5.33816 5.63653 5.77702 5.90321 6.03078 6.05326 6.11119 6.49900 6.77902 7.21318 7.38214 8.85837 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.007217 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.561682 B = 3878.605059 C = 6056.996453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.048 3.952 3 N -0.538 5.538 4 C 0.014 3.986 5 C 0.057 3.943 6 O -0.388 6.388 7 C 0.095 3.905 8 H 0.085 0.915 9 C 0.519 3.481 10 O -0.578 6.578 11 N -0.588 5.588 12 C 0.249 3.751 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.035 3.965 16 N -0.907 5.907 17 Si 0.943 3.057 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.272 1.272 21 C 0.149 3.851 22 C -0.185 4.185 23 C -0.175 4.175 24 C -0.152 4.152 25 C 0.026 3.974 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.034 0.966 33 H 0.128 0.872 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.033 0.967 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 2.935 -5.968 7.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 N -0.264 5.264 4 C -0.114 4.114 5 C -0.020 4.020 6 O -0.306 6.306 7 C 0.034 3.966 8 H 0.102 0.898 9 C 0.307 3.693 10 O -0.459 6.459 11 N -0.319 5.319 12 C 0.129 3.871 13 C -0.579 4.579 14 H 0.071 0.929 15 C -0.167 4.167 16 N -0.545 5.545 17 Si 0.769 3.231 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.197 1.197 21 C 0.027 3.973 22 C -0.204 4.204 23 C -0.212 4.212 24 C -0.189 4.189 25 C -0.102 4.102 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.052 0.948 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.123 0.877 45 H 0.138 0.862 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.672 3.407 -6.013 7.409 hybrid contribution 0.220 -1.581 -0.141 1.603 sum -2.451 1.826 -6.153 6.870 Atomic orbital electron populations 1.21728 0.92418 1.02602 1.02680 1.22131 0.97822 0.87673 1.00313 1.62256 1.11976 1.17337 1.34791 1.22956 1.03107 0.95277 0.90053 1.23012 0.79783 0.95874 1.03290 1.88006 1.25563 1.76775 1.40297 1.21712 0.91966 0.94296 0.88674 0.89784 1.20276 0.89829 0.76742 0.82494 1.90568 1.64641 1.50318 1.40351 1.48084 1.08616 1.62494 1.12662 1.19240 0.89984 0.93743 0.84180 1.21459 1.30193 0.91833 1.14447 0.92948 1.25479 0.94540 1.02028 0.94654 1.69991 1.30390 1.37240 1.16927 0.85779 0.77792 0.81101 0.78437 1.20134 1.20397 1.19671 1.20940 0.80169 0.95839 1.00363 1.22623 0.96130 0.97118 1.04559 1.23025 1.04000 0.98180 0.96005 1.23028 0.93654 1.03137 0.99085 1.22898 0.88405 0.94968 1.03932 0.90836 0.92448 0.91195 0.94782 0.92297 0.86530 0.94765 0.85404 0.91640 0.95820 0.94902 0.92227 0.89990 0.91261 0.88835 0.89467 0.88257 0.87090 0.87744 0.86171 0.96469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.84 71.98 0.71 -2.43 16 2 C 0.05 1.46 5.68 86.30 0.49 1.95 16 3 N -0.54 -18.20 4.73 -895.23 -4.23 -22.43 16 4 C 0.01 0.38 5.43 86.31 0.47 0.84 16 5 C 0.06 1.59 7.01 72.01 0.50 2.09 16 6 O -0.39 -15.12 10.04 -130.32 -1.31 -16.43 16 7 C 0.09 3.92 2.37 29.88 0.07 3.99 16 8 H 0.08 3.51 6.87 -2.39 -0.02 3.49 16 9 C 0.52 23.55 7.02 87.66 0.62 24.16 16 10 O -0.58 -28.69 16.05 15.63 0.25 -28.44 16 11 N -0.59 -25.54 2.46 -826.15 -2.03 -27.57 16 12 C 0.25 11.71 4.69 85.63 0.40 12.11 16 13 C -0.54 -26.97 6.90 25.60 0.18 -26.79 16 14 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 15 C 0.04 1.76 5.46 84.66 0.46 2.23 16 16 N -0.91 -47.89 13.29 21.45 0.28 -47.61 16 17 Si 0.94 40.31 29.54 68.60 2.03 42.33 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 C 0.15 5.72 5.78 86.38 0.50 6.22 16 22 C -0.19 -6.09 6.01 -10.79 -0.06 -6.15 16 23 C -0.18 -5.00 10.18 30.62 0.31 -4.68 16 24 C -0.15 -3.82 10.25 30.62 0.31 -3.50 16 25 C 0.03 1.07 4.66 86.32 0.40 1.47 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.33 6.51 -2.39 -0.02 1.31 16 29 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 31 H 0.12 2.42 6.37 -2.39 -0.02 2.40 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.13 2.73 8.14 -2.38 -0.02 2.71 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.02 1.18 8.12 -2.38 -0.02 1.16 16 36 H 0.03 1.62 5.54 -2.39 -0.01 1.61 16 37 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 38 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 39 H 0.07 2.72 6.99 -2.39 -0.02 2.70 16 40 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.09 2.61 8.03 -2.39 -0.02 2.60 16 42 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.12 5.53 4.21 -2.39 -0.01 5.52 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -60.92 363.15 1.30 -59.62 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.95 Total: 29.03 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 5.36 Total: 11.50 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -5.98 Total: -97.61 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.06 Total: -44.87 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Total: -60.92 1.30 -59.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363343228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.989 kcal (2) G-P(sol) polarization free energy of solvation -60.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds