Wall clock time and date at job start Tue Mar 31 2020 03:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46813 * 90.00478 * 3 2 1 5 5 H 1.08004 * 120.00203 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00207 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00042 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47183 * 59.99683 * 8 6 4 10 10 H 1.48498 * 109.47060 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46993 * 299.99737 * 8 6 4 12 12 C 1.34779 * 120.00245 * 180.28221 * 2 1 3 13 13 O 1.21277 * 120.00344 * 179.71873 * 12 2 1 14 14 C 1.50707 * 119.99794 * 359.72012 * 12 2 1 15 15 C 1.53001 * 109.46907 * 180.02562 * 14 12 2 16 16 N 1.46906 * 109.46772 * 180.02562 * 15 14 12 17 17 C 1.46896 * 110.99913 * 175.07233 * 16 15 14 18 18 H 1.09000 * 110.43533 * 32.08291 * 17 16 15 19 19 C 1.54809 * 110.49081 * 154.77208 * 17 16 15 20 20 C 1.54988 * 102.09278 * 139.55512 * 19 17 16 21 21 O 1.44379 * 103.49336 * 322.97492 * 20 19 17 22 22 C 1.43748 * 106.97214 * 40.06237 * 21 20 19 23 23 H 1.09001 * 110.00254 * 92.98486 * 22 21 20 24 24 C 1.53000 * 109.87618 * 214.06258 * 22 21 20 25 25 C 1.52999 * 117.50338 * 8.28469 * 24 22 21 26 26 C 1.53002 * 60.00213 * 252.51304 * 25 24 22 27 27 H 1.08992 * 109.47342 * 89.99754 * 1 2 3 28 28 H 1.09007 * 109.46674 * 209.99506 * 1 2 3 29 29 H 1.08994 * 109.46844 * 329.99086 * 1 2 3 30 30 H 1.08993 * 109.47254 * 210.00284 * 3 2 1 31 31 H 1.09000 * 109.46843 * 330.00691 * 3 2 1 32 32 H 0.96997 * 119.99607 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47170 * 300.00045 * 14 12 2 34 34 H 1.08998 * 109.47040 * 59.99801 * 14 12 2 35 35 H 1.08998 * 109.47077 * 299.99901 * 15 14 12 36 36 H 1.08993 * 109.47160 * 60.00129 * 15 14 12 37 37 H 1.00897 * 110.99973 * 51.11219 * 16 15 14 38 38 H 1.09004 * 110.90607 * 257.75617 * 19 17 16 39 39 H 1.08998 * 110.90209 * 21.35503 * 19 17 16 40 40 H 1.09002 * 110.61722 * 204.47931 * 20 19 17 41 41 H 1.08996 * 110.75845 * 81.54538 * 20 19 17 42 42 H 1.09004 * 115.54842 * 153.99938 * 24 22 21 43 43 H 1.09000 * 117.49240 * 0.02562 * 25 24 22 44 44 H 1.08996 * 117.49813 * 145.01927 * 25 24 22 45 45 H 1.09001 * 117.49425 * 252.51113 * 26 25 24 46 46 H 1.08990 * 117.51611 * 107.47879 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 1.4208 5 1 2.0975 1.0960 2.2417 6 6 3.1261 2.8778 1.6728 7 7 3.5534 3.6180 0.6732 8 14 3.4369 3.4173 3.4340 9 1 4.2397 2.3826 4.1344 10 1 4.1796 4.7033 3.4340 11 1 2.1392 3.5946 4.1337 12 6 2.1389 -1.1672 -0.0057 13 8 3.3517 -1.1672 -0.0109 14 6 1.3854 -2.4724 -0.0058 15 6 2.3797 -3.6352 -0.0123 16 7 1.6452 -4.9075 -0.0129 17 6 2.5648 -6.0462 -0.1368 18 1 3.5168 -5.8206 0.3437 19 6 1.9344 -7.3210 0.4748 20 6 2.3541 -8.4114 -0.5434 21 8 2.2691 -7.7347 -1.8159 22 6 2.7810 -6.4059 -1.6196 23 1 3.8446 -6.3773 -1.8568 24 6 2.0229 -5.4195 -2.5102 25 6 0.7935 -5.9420 -3.2561 26 6 2.0834 -5.6428 -4.0226 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 3.1499 1.1384 -0.5138 31 1 1.6084 2.0284 -0.5137 32 1 4.0296 4.4443 0.8506 33 1 0.7625 -2.5323 0.8867 34 1 0.7550 -2.5279 -0.8932 35 1 3.0029 -3.5754 -0.9045 36 1 3.0097 -3.5795 0.8754 37 1 0.9497 -4.9230 -0.7437 38 1 2.3524 -7.5272 1.4602 39 1 0.8492 -7.2325 0.5249 40 1 1.6634 -9.2540 -0.5100 41 1 3.3742 -8.7452 -0.3535 42 1 1.9960 -4.3896 -2.1542 43 1 0.5246 -6.9884 -3.1120 44 1 -0.0427 -5.2559 -3.3908 45 1 2.0957 -4.7598 -4.6616 46 1 2.6635 -6.4922 -4.3831 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364620890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:26 Heat of formation + Delta-G solvation = -67.706052 kcal Electronic energy + Delta-G solvation = -24499.550238 eV Core-core repulsion = 21003.409455 eV Total energy + Delta-G solvation = -3496.140783 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30941 -40.57830 -37.47712 -36.92541 -36.45766 -34.74798 -32.99065 -30.97704 -29.77320 -28.50596 -27.24708 -25.40678 -24.44496 -23.44042 -23.01289 -22.37426 -20.80096 -19.89112 -18.70893 -17.99203 -17.90739 -17.21912 -17.06707 -16.83010 -16.46624 -16.12063 -15.69957 -15.40836 -15.25390 -14.82593 -14.41087 -14.30070 -14.02474 -13.68842 -13.44621 -13.26618 -13.18226 -13.02668 -12.80565 -12.70638 -12.56296 -12.48905 -12.32518 -12.22332 -12.19363 -12.01238 -11.73273 -11.72029 -11.21902 -11.06164 -10.65952 -10.65182 -10.60978 -9.43377 -9.39621 -8.23310 -6.38643 1.36105 1.40534 1.47881 1.84394 2.28894 2.42681 2.76734 2.84893 3.05943 3.17221 3.58375 3.65990 3.80878 3.89572 4.00751 4.06564 4.10780 4.20601 4.27522 4.36943 4.41444 4.42382 4.51685 4.61133 4.69417 4.73139 4.79133 4.87233 4.91532 4.95531 4.98172 4.99911 5.05052 5.09127 5.18139 5.20328 5.22368 5.32956 5.55388 5.83393 5.83856 6.01725 6.05331 6.40661 6.68823 6.79632 7.27411 7.48630 8.83568 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.003001 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.671472 B = 9328.093200 C = 9793.564899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.259 1.259 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.120 4.120 15 C 0.079 3.921 16 N -0.669 5.669 17 C 0.059 3.941 18 H 0.084 0.916 19 C -0.134 4.134 20 C 0.041 3.959 21 O -0.383 6.383 22 C 0.080 3.920 23 H 0.061 0.939 24 C -0.190 4.190 25 C -0.149 4.149 26 C -0.176 4.176 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.064 0.936 30 H -0.004 1.004 31 H 0.023 0.977 32 H 0.267 0.733 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.354 0.646 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 -23.284 -4.011 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.183 1.183 12 C 0.283 3.717 13 O -0.483 6.483 14 C -0.160 4.160 15 C -0.050 4.050 16 N -0.303 5.303 17 C -0.052 4.052 18 H 0.102 0.898 19 C -0.172 4.172 20 C -0.035 4.035 21 O -0.302 6.302 22 C 0.021 3.979 23 H 0.079 0.921 24 C -0.208 4.208 25 C -0.186 4.186 26 C -0.213 4.213 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.014 0.986 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.177 0.823 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.116 0.884 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.813 -23.209 -3.577 25.083 hybrid contribution 1.143 1.089 -0.107 1.582 sum -7.671 -22.120 -3.684 23.700 Atomic orbital electron populations 1.21953 0.77755 1.04121 1.02626 1.48197 1.08485 1.06378 1.71155 1.18736 0.91054 0.80554 0.95974 1.21699 1.36945 1.06602 0.93097 0.92793 1.25890 0.94863 0.96411 1.02095 1.70050 1.38917 1.14799 1.33165 0.85456 0.78903 0.77346 0.79047 1.20305 1.20322 1.18335 1.21354 0.87789 0.86718 0.75845 1.90637 1.16760 1.88256 1.52649 1.21562 0.98912 0.89042 1.06463 1.21573 0.94933 0.87893 1.00627 1.60596 1.15313 1.00364 1.54026 1.22979 0.96553 0.92276 0.93384 0.89750 1.23093 1.02522 0.92051 0.99557 1.23735 1.01960 0.95932 0.81872 1.88840 1.84803 1.24333 1.32213 1.22777 0.96589 0.83167 0.95398 0.92066 1.22656 1.04289 0.99490 0.94365 1.22909 0.91108 1.02891 1.01668 1.22937 1.02095 1.03332 0.92970 0.91068 0.88499 0.91733 0.98582 0.95941 0.92374 0.86430 0.86550 0.95347 0.92163 0.82296 0.88918 0.89547 0.87169 0.91516 0.86937 0.87978 0.87491 0.88441 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.61 -25.81 2.86 -851.14 -2.43 -28.24 16 3 C 0.26 14.14 5.17 85.63 0.44 14.58 16 4 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 8 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 C 0.49 20.24 7.67 87.66 0.67 20.92 16 13 O -0.60 -31.20 15.56 -3.02 -0.05 -31.25 16 14 C -0.12 -3.15 4.46 29.85 0.13 -3.02 16 15 C 0.08 2.10 3.89 86.30 0.34 2.44 16 16 N -0.67 -13.51 6.11 -486.47 -2.97 -16.48 16 17 C 0.06 1.12 3.37 45.91 0.15 1.28 16 18 H 0.08 1.74 7.86 -2.39 -0.02 1.72 16 19 C -0.13 -1.93 6.88 31.89 0.22 -1.71 16 20 C 0.04 0.56 7.72 72.66 0.56 1.12 16 21 O -0.38 -7.37 9.58 -148.98 -1.43 -8.79 16 22 C 0.08 1.59 3.79 30.97 0.12 1.71 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 C -0.19 -3.68 3.93 -10.79 -0.04 -3.73 16 25 C -0.15 -2.47 9.80 30.59 0.30 -2.17 16 26 C -0.18 -3.28 10.20 30.60 0.31 -2.96 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.10 2.07 6.45 -2.38 -0.02 2.05 16 29 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.00 -0.25 7.41 -2.39 -0.02 -0.27 16 31 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.12 2.68 7.41 -2.39 -0.02 2.66 16 34 H 0.12 2.31 8.10 -2.39 -0.02 2.29 16 35 H 0.03 0.84 6.65 -2.39 -0.02 0.82 16 36 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.35 6.39 6.15 -89.70 -0.55 5.84 16 38 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.09 1.26 8.06 -2.39 -0.02 1.24 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 2.38 4.65 -2.38 -0.01 2.36 16 43 H 0.10 1.79 7.08 -2.39 -0.02 1.77 16 44 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -74.54 365.53 1.06 -73.49 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.41 Total: 19.40 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.22 Total: 1.25 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -5.12 Total: -101.33 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.47 Total: -40.04 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -74.54 1.06 -73.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364620890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.780 kcal (2) G-P(sol) polarization free energy of solvation -74.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds