Wall clock time and date at job start Tue Mar 31 2020 03:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47228 * 2 1 4 4 C 1.50705 * 109.47147 * 119.99582 * 2 1 3 5 5 O 1.21280 * 120.00178 * 119.99898 * 4 2 1 6 6 N 1.34780 * 119.99918 * 300.00224 * 4 2 1 7 7 C 1.46497 * 119.99984 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00004 * 179.97438 * 6 4 2 9 9 C 1.50704 * 109.46811 * 90.00210 * 8 6 4 10 10 H 1.08003 * 119.99606 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00279 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99830 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00327 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47214 * 89.99644 * 13 11 9 15 15 H 1.48494 * 109.47200 * 209.99931 * 13 11 9 16 16 H 1.48505 * 109.46773 * 329.99855 * 13 11 9 17 17 N 1.46895 * 109.47261 * 239.99498 * 2 1 3 18 18 C 1.47908 * 110.99880 * 180.12784 * 17 2 1 19 19 C 1.53995 * 107.05562 * 145.84470 * 18 17 2 20 20 C 1.54588 * 105.14156 * 358.77649 * 19 18 17 21 21 O 1.42903 * 110.72894 * 96.58009 * 20 19 18 22 22 C 1.53006 * 110.72236 * 219.68597 * 20 19 18 23 23 C 1.53006 * 117.49549 * 253.94706 * 22 20 19 24 24 C 1.52999 * 59.99854 * 252.50844 * 23 22 20 25 25 C 1.48538 * 111.00275 * 297.52254 * 17 2 1 26 26 H 1.08995 * 109.46918 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47034 * 300.00338 * 1 2 3 28 28 H 1.08992 * 109.46821 * 60.00356 * 1 2 3 29 29 H 1.09004 * 109.47003 * 89.99674 * 7 6 4 30 30 H 1.09003 * 109.47431 * 209.99999 * 7 6 4 31 31 H 1.08998 * 109.47168 * 329.99924 * 7 6 4 32 32 H 1.08997 * 109.47152 * 209.99830 * 8 6 4 33 33 H 1.09000 * 109.47247 * 330.00687 * 8 6 4 34 34 H 0.96999 * 120.00359 * 179.97438 * 12 11 9 35 35 H 1.08999 * 109.91984 * 26.49161 * 18 17 2 36 36 H 1.09005 * 110.07932 * 265.28660 * 18 17 2 37 37 H 1.08992 * 110.30844 * 239.85334 * 19 18 17 38 38 H 1.09002 * 110.39151 * 117.73258 * 19 18 17 39 39 H 0.96706 * 113.99333 * 303.15259 * 21 20 19 40 40 H 1.08993 * 115.54883 * 39.65032 * 22 20 19 41 41 H 1.09000 * 117.49898 * 359.97438 * 23 22 20 42 42 H 1.09004 * 117.49365 * 145.02008 * 23 22 20 43 43 H 1.08994 * 117.50425 * 252.51011 * 24 23 22 44 44 H 1.09007 * 117.51477 * 107.48391 * 24 23 22 45 45 H 1.08993 * 110.66401 * 81.84332 * 25 17 2 46 46 H 1.09000 * 110.66236 * 318.71854 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7296 -1.6964 1.1194 6 7 1.7067 -0.2498 2.4547 7 6 0.8649 0.9416 2.5890 8 6 2.1946 -0.9406 3.6509 9 6 3.5223 -0.3575 4.0613 10 1 3.9591 0.4469 3.4880 11 6 4.1798 -0.8516 5.1678 12 7 3.6481 -1.8315 5.8655 13 14 5.8252 -0.1284 5.6769 14 1 5.6009 0.9961 6.6206 15 1 6.6423 -1.1759 6.3403 16 1 6.5402 0.3697 4.4744 17 7 2.0197 -0.6926 -1.1993 18 6 3.4983 -0.7149 -1.2319 19 6 3.9156 -2.0460 -1.8842 20 6 2.5895 -2.7810 -2.1860 21 8 2.1894 -2.5664 -3.5410 22 6 2.7208 -4.2770 -1.8929 23 6 2.8183 -5.2254 -3.0895 24 6 1.5362 -5.1746 -2.2561 25 6 1.5931 -2.1153 -1.2040 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.1832 0.6441 2.6220 30 1 1.1227 1.4669 3.5086 31 1 1.0288 1.6003 1.7361 32 1 1.4766 -0.8150 4.4612 33 1 2.3155 -2.0019 3.4337 34 1 4.1108 -2.1794 6.6438 35 1 3.8930 -0.6587 -0.2174 36 1 3.8723 0.1214 -1.8226 37 1 4.5239 -2.6310 -1.1944 38 1 4.4642 -1.8609 -2.8077 39 1 2.0915 -1.6342 -3.7792 40 1 3.2909 -4.5327 -0.9998 41 1 2.7885 -4.7837 -4.0856 42 1 3.4528 -6.1055 -2.9838 43 1 1.3272 -6.0212 -1.6021 44 1 0.6632 -4.6994 -2.7035 45 1 0.5709 -2.2092 -1.5706 46 1 1.6870 -2.5483 -0.2081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370082157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:46 Heat of formation + Delta-G solvation = -35.167226 kcal Electronic energy + Delta-G solvation = -25853.945610 eV Core-core repulsion = 22359.215816 eV Total energy + Delta-G solvation = -3494.729794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.56887 -38.77021 -36.43017 -35.10212 -34.81463 -33.03200 -32.11478 -28.81145 -28.43046 -27.48383 -26.12970 -24.17357 -23.01028 -22.23696 -21.60908 -20.75877 -19.88190 -18.45488 -17.13810 -16.63462 -16.45440 -15.74906 -15.55338 -14.94960 -14.75768 -14.64354 -13.98922 -13.86950 -13.71106 -13.61975 -13.09090 -12.90638 -12.39232 -12.27590 -12.16021 -12.01910 -11.82463 -11.39155 -11.34945 -11.21877 -11.02793 -11.02467 -10.94563 -10.81918 -10.62873 -10.58960 -10.48859 -10.21522 -10.00273 -9.67019 -9.54662 -9.41011 -8.49245 -7.90942 -7.68294 -6.09937 -4.15110 3.25190 3.26817 3.32813 3.37258 3.83969 3.91295 4.06402 4.31910 4.39726 4.77397 4.81754 4.84870 5.01540 5.12819 5.21440 5.24560 5.29150 5.32754 5.45626 5.57474 5.63246 5.71316 5.74321 5.76489 5.82912 5.91326 5.94639 5.96178 6.07098 6.15353 6.22968 6.25040 6.28015 6.31559 6.37602 6.44870 6.94414 6.97474 7.08295 7.37218 7.46371 7.80427 7.85747 8.16993 8.32984 8.82142 8.98522 9.50276 10.98078 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.004584 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.833819 B = 6106.250852 C = 6784.149993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 H 0.101 0.899 4 C 0.479 3.521 5 O -0.536 6.536 6 N -0.597 5.597 7 C 0.080 3.920 8 C 0.245 3.755 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.496 5.496 18 C 0.026 3.974 19 C -0.144 4.144 20 C 0.168 3.832 21 O -0.556 6.556 22 C -0.137 4.137 23 C -0.168 4.168 24 C -0.173 4.173 25 C -0.001 4.001 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.380 0.620 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 1.843 -15.242 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 H 0.119 0.881 4 C 0.264 3.736 5 O -0.415 6.415 6 N -0.328 5.328 7 C -0.064 4.064 8 C 0.125 3.875 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.219 5.219 18 C -0.101 4.101 19 C -0.183 4.183 20 C 0.127 3.873 21 O -0.362 6.362 22 C -0.155 4.155 23 C -0.205 4.205 24 C -0.209 4.209 25 C -0.129 4.129 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.228 0.772 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.949 0.855 -15.566 16.686 hybrid contribution 1.281 0.757 1.359 2.015 sum -4.668 1.612 -14.207 15.041 Atomic orbital electron populations 1.22001 0.92551 1.02963 1.03194 1.21928 0.97203 0.99145 0.87875 0.88075 1.21391 0.81211 0.85639 0.85313 1.90602 1.38152 1.26869 1.85866 1.48266 1.49079 1.27893 1.07587 1.21814 0.93840 0.88168 1.02562 1.19287 0.94223 0.93677 0.80300 1.21395 1.04809 1.19058 1.11246 0.92597 1.24930 0.97939 0.94909 0.96247 1.69929 1.39044 1.25994 1.18337 0.86507 0.83628 0.78731 0.78623 1.20588 1.21052 1.19937 1.65185 1.09085 1.13750 1.33850 1.22950 0.88133 0.97101 1.01936 1.22957 0.97864 0.96454 1.00990 1.21231 0.92375 0.92303 0.81385 1.86372 1.90933 1.31216 1.27698 1.22164 1.03602 0.89788 0.99965 1.22839 1.00405 1.00590 0.96674 1.22859 0.92763 1.01799 1.03528 1.24134 0.98463 0.88368 1.01912 0.92359 0.90558 0.91292 0.93287 0.90833 0.92188 0.95116 0.93930 0.92681 0.90981 0.91307 0.90248 0.91014 0.77209 0.86549 0.88028 0.89441 0.89149 0.88726 0.90564 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.74 37.16 0.32 -1.48 16 2 C 0.05 0.76 2.05 -68.86 -0.14 0.62 16 3 H 0.10 1.40 7.40 -51.93 -0.38 1.01 16 4 C 0.48 9.38 5.96 -10.98 -0.07 9.32 16 5 O -0.54 -12.33 11.33 5.56 0.06 -12.26 16 6 N -0.60 -12.15 2.86 -182.95 -0.52 -12.67 16 7 C 0.08 1.21 8.80 59.85 0.53 1.74 16 8 C 0.24 6.26 5.16 -5.19 -0.03 6.23 16 9 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 13 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 N -0.50 -7.12 5.30 -223.87 -1.19 -8.31 16 18 C 0.03 0.40 6.00 -2.75 -0.02 0.38 16 19 C -0.14 -2.06 6.24 -25.38 -0.16 -2.22 16 20 C 0.17 2.33 1.14 -88.76 -0.10 2.23 16 21 O -0.56 -7.10 11.63 -35.23 -0.41 -7.51 16 22 C -0.14 -1.90 5.01 -90.61 -0.45 -2.35 16 23 C -0.17 -2.04 9.91 -26.73 -0.26 -2.31 16 24 C -0.17 -2.15 10.04 -26.73 -0.27 -2.41 16 25 C 0.00 -0.02 4.22 -1.90 -0.01 -0.03 16 26 H 0.06 0.76 7.00 -51.93 -0.36 0.39 16 27 H 0.08 0.85 4.53 -51.93 -0.24 0.61 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 30 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.35 5.64 -51.93 -0.29 1.06 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.25 7.74 -51.93 -0.40 0.85 16 38 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.38 4.02 9.04 45.56 0.41 4.44 16 40 H 0.12 1.73 7.98 -51.93 -0.41 1.32 16 41 H 0.10 1.27 7.26 -51.93 -0.38 0.89 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.09 7.67 -51.93 -0.40 0.69 16 46 H 0.09 1.74 5.07 -51.93 -0.26 1.48 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -31.27 354.15 -8.77 -40.04 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.69 Total: 7.95 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.07 Total: -3.62 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.97 Total: -46.56 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.35 Total: -19.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.27 -8.77 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370082157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.873 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds